Remove variables as soon as possible to limit memory consumption for … #202
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| # This workflow will install Python dependencies, run tests and lint with a single version of Python | |
| # For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions | |
| name: Ubuntu tests | |
| on: | |
| push: | |
| branches: [ "pygmtsar" ] | |
| pull_request: | |
| branches: [ "pygmtsar" ] | |
| permissions: | |
| contents: read | |
| jobs: | |
| S1A_Stack_CPGF_T173: | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: ["ubuntu-latest"] | |
| python-version: ["3.10", "3.11"] | |
| runs-on: ${{ matrix.os }} | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install system dependencies | |
| run: | | |
| uname -a | |
| # prepare system | |
| sudo apt update | |
| # https://github.com/gmtsar/gmtsar/wiki/GMTSAR-Wiki-Page | |
| sudo apt install -y csh subversion autoconf libtiff5-dev libhdf5-dev wget | |
| sudo apt install -y liblapack-dev | |
| sudo apt install -y gfortran | |
| sudo apt install -y g++ | |
| sudo apt install -y libgmt-dev | |
| sudo apt install -y gmt-dcw gmt-gshhg | |
| # gmt-gshhg-full should be installed automatically (it is required to use GMTSAR landmask) | |
| sudo apt install -y gmt | |
| # add missed package | |
| sudo apt install -y make | |
| - name: Compile GMTSAR | |
| run: | | |
| git clone --branch master https://github.com/gmtsar/gmtsar GMTSAR | |
| cd GMTSAR | |
| autoconf | |
| ./configure --with-orbits-dir=/tmp CFLAGS='-z muldefs' LDFLAGS='-z muldefs' | |
| make CFLAGS='-z muldefs' LDFLAGS='-z muldefs' | |
| make install | |
| # check installation | |
| export PATH=$PATH:/home/runner/work/gmtsar/gmtsar/GMTSAR/bin | |
| echo "Start gmtsar_sharedir.csh" | |
| gmtsar_sharedir.csh | |
| - name: Install PyGMTSAR | |
| run: | | |
| # upgrade package to resolve dependencies | |
| pip3 install click --upgrade | |
| pip3 install matplotlib seaborn | |
| pip3 install -e ./pygmtsar/ | |
| - name: Cache dataset | |
| uses: actions/cache@v3 | |
| with: | |
| path: tests/S1A_Stack_CPGF_T173.tar.gz | |
| key: S1A_Stack_CPGF_T173.tar.gz | |
| restore-keys: S1A_Stack_CPGF_T173 | |
| - name: Run test | |
| working-directory: tests | |
| run: | | |
| export PATH=$PATH:/home/runner/work/gmtsar/gmtsar/GMTSAR/bin | |
| sh ./S1A_Stack_CPGF_T173.sh | |
| - name: Archive test results | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: Plots (${{ matrix.os }}, ${{ matrix.python-version }}) | |
| path: tests/*.jpg | |
| if-no-files-found: error | |
| S1A_2016_Kumamoto_Earthquake: | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: ["ubuntu-latest"] | |
| python-version: ["3.10", "3.11"] | |
| runs-on: ${{ matrix.os }} | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install system dependencies | |
| run: | | |
| uname -a | |
| # prepare system | |
| sudo apt update | |
| # https://github.com/gmtsar/gmtsar/wiki/GMTSAR-Wiki-Page | |
| sudo apt install -y csh subversion autoconf libtiff5-dev libhdf5-dev wget | |
| sudo apt install -y liblapack-dev | |
| sudo apt install -y gfortran | |
| sudo apt install -y g++ | |
| sudo apt install -y libgmt-dev | |
| sudo apt install -y gmt-dcw gmt-gshhg | |
| # gmt-gshhg-full should be installed automatically (it is required to use GMTSAR landmask) | |
| sudo apt install -y gmt | |
| # add missed package | |
| sudo apt install -y make | |
| - name: Compile GMTSAR | |
| run: | | |
| git clone --branch master https://github.com/gmtsar/gmtsar GMTSAR | |
| cd GMTSAR | |
| autoconf | |
| ./configure --with-orbits-dir=/tmp CFLAGS='-z muldefs' LDFLAGS='-z muldefs' | |
| make CFLAGS='-z muldefs' LDFLAGS='-z muldefs' | |
| make install | |
| # check installation | |
| export PATH=$PATH:/home/runner/work/gmtsar/gmtsar/GMTSAR/bin | |
| echo "Start gmtsar_sharedir.csh" | |
| gmtsar_sharedir.csh | |
| - name: Install PyGMTSAR | |
| run: | | |
| # upgrade package to resolve dependencies | |
| pip3 install click --upgrade | |
| pip3 install matplotlib seaborn | |
| pip3 install -e ./pygmtsar/ | |
| - name: Run test | |
| working-directory: tests | |
| run: | | |
| export PATH=$PATH:/home/runner/work/gmtsar/gmtsar/GMTSAR/bin | |
| sh ./S1A_2016_Kumamoto_Earthquake.sh force | |
| - name: Archive test results | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: Plots S1A_2016_Kumamoto_Earthquake (${{ matrix.os }}, ${{ matrix.python-version }}) | |
| path: tests/*.jpg | |
| if-no-files-found: error | |
| S1AB_2021_Crete_Earthquake: | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: ["ubuntu-latest"] | |
| python-version: ["3.10", "3.11"] | |
| runs-on: ${{ matrix.os }} | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install system dependencies | |
| run: | | |
| uname -a | |
| # prepare system | |
| sudo apt update | |
| # https://github.com/gmtsar/gmtsar/wiki/GMTSAR-Wiki-Page | |
| sudo apt install -y csh subversion autoconf libtiff5-dev libhdf5-dev wget | |
| sudo apt install -y liblapack-dev | |
| sudo apt install -y gfortran | |
| sudo apt install -y g++ | |
| sudo apt install -y libgmt-dev | |
| sudo apt install -y gmt-dcw gmt-gshhg | |
| # gmt-gshhg-full should be installed automatically (it is required to use GMTSAR landmask) | |
| sudo apt install -y gmt | |
| # add missed package | |
| sudo apt install -y make | |
| - name: Compile GMTSAR | |
| run: | | |
| git clone --branch master https://github.com/gmtsar/gmtsar GMTSAR | |
| cd GMTSAR | |
| autoconf | |
| ./configure --with-orbits-dir=/tmp CFLAGS='-z muldefs' LDFLAGS='-z muldefs' | |
| make CFLAGS='-z muldefs' LDFLAGS='-z muldefs' | |
| make install | |
| # check installation | |
| export PATH=$PATH:/home/runner/work/gmtsar/gmtsar/GMTSAR/bin | |
| echo "Start gmtsar_sharedir.csh" | |
| gmtsar_sharedir.csh | |
| - name: Install PyGMTSAR | |
| run: | | |
| # upgrade package to resolve dependencies | |
| pip3 install click --upgrade | |
| pip3 install matplotlib seaborn | |
| pip3 install -e ./pygmtsar/ | |
| - name: Run test | |
| working-directory: tests | |
| run: | | |
| export PATH=$PATH:/home/runner/work/gmtsar/gmtsar/GMTSAR/bin | |
| sh ./S1AB_2021_Crete_Earthquake.sh force | |
| - name: Archive test results | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: Plots S1AB_2021_Crete_Earthquake (${{ matrix.os }}, ${{ matrix.python-version }}) | |
| path: tests/*.jpg | |
| if-no-files-found: error |