Skip to content

Issues: AdmiralenOla/Scoary

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

26 Open 41 Closed
26 Open 41 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

depends on deprecated pkg_resources module
#112 opened Oct 16, 2024 by emollier
missing data in genotype file
#109 opened Aug 19, 2023 by snackens
Significance of the worst_pairwise_p
#108 opened Mar 7, 2023 by plasmid02
3
UnicodeDecode Error while reading traits file
#107 opened Jan 15, 2023 by arijitnus
Unrecognized character found in trait file
#105 opened Dec 11, 2022 by shaodongyan
2
Should assemblies be removed if core gene alignment shows redundancies?
#104 opened Sep 21, 2022 by chahatupreti
Stop at "Calculating max number of contrasting pairs for each nominally significant gene: in the Ternimal
#103 opened Aug 12, 2022 by Xiangyang1984
Convert vcf from parsnp to Scoary input
#98 opened Feb 25, 2022 by nicola-palmieri
Startcol error
#97 opened Feb 2, 2022 by GillNdhlovu
1
Support for non-binary traits help wanted question
#96 opened Nov 23, 2021 by MrTomRod
9
collapse flag output
#95 opened Oct 8, 2021 by jayvorn
Question about --collapse enhancement
#94 opened Jul 19, 2021 by Antonia-Chalka
2
I got the CSV files of all trait related genes. How do I get the important genes in all trait files?
#93 opened Jun 30, 2021 by 971202
Gene enrichments across host sites
#91 opened May 19, 2021 by spatz018
IndexError: list index out of range
#90 opened Apr 15, 2021 by hollygene
4
_csv.Error: field larger than field limit (131072)
#89 opened Feb 3, 2021 by ga23981
Scoary output for phandango
#88 opened Dec 3, 2020 by pavlo888
1
Scoary run in cluster MPI??? enhancement help wanted question
#83 opened Jul 6, 2020 by germant13
1
Add functionality to handle missing values in the genetic data enhancement
#75 opened Feb 25, 2019 by AdmiralenOla 1.6.17
@AdmiralenOla
Please switch to Python3
#74 opened Jan 29, 2019 by tillea 1.6.17
@AdmiralenOla
Test data are missing so test suite does not succeed
#73 opened Jan 29, 2019 by tillea
@AdmiralenOla
Don't crash when newick file has node labels bug
#72 opened Jan 24, 2019 by AdmiralenOla 1.6.17
@AdmiralenOla
2
RuntimeError: maximum recursion depth exceeded while calling a Python object bug help wanted
#69 opened Sep 19, 2018 by mlaziz 1.6.17
4
Incomplete presence/absence data from Single-cell genomes question
#66 opened Dec 22, 2017 by thackl
3
Maximum recursion depth bug
#56 opened Mar 31, 2017 by AdmiralenOla 1.6.17
@AdmiralenOla
4
ProTip! Adding no:label will show everything without a label.