Galaxy release_24.1 #58
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This update is just done using the actual running job_conf.yml of mississippi_dev and copying it in the corresponding file of Galaxy expand (pointed by the commit)
Now that dev_gce passes all tests in GitHub we apply version change to all environments, using the 000_cross_env_vars files
using in local instance (.venv) root@mississippi:~# get-tool-list -v -g https://mississippi.snv.jussieu.fr -u [email protected] -a f8396de2e01c754d08811fa9fcb52da8 -o mississippi_dev_tool_list.yml --skip_changeset_revision --get_data_managers .venv must contains ephemeris (pip install ephemeris)
drop local environment/local_runner which probably causes crashes of workflows
from get-tool-list -g usegalaxy.sorbonne-universite.fr ... and cat export file
As tested in conect environment
- id: "lumpy_smoove"
destination: "cluster_4"
picard_AddOrReplaceReadGroups
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adapt galaxyXpand playbook to release_24.1 (march 2024)
After minimal change of version tag, main tests pass. However there is an issue with the tool install playbook: