Merge pull request #9 from ACCESS-NRI/python-package

Setup python packaging for pypi and conda

.conda/environment.yml

@@ -0,0 +1,9 @@
+channels:
+  - conda-forge
+  - accessnri
+  - default
+
+dependencies:
+  - anaconda-client
+  - conda-build
+  - conda-verify

.conda/meta.yaml

@@ -0,0 +1,38 @@
+{% set data = load_setup_py_data(setup_file='../setup.py', from_recipe_dir=True) %}
+{% set version = data.get('version') %}
+
+package:
+  name: med_diagnostics
+  version: "{{ version }}"
+
+source:
+  url: "https://pypi.io/packages/source/a/med-diagnostics/med_diagnostics-{{ version }}.tar.gz"
+
+build:
+  noarch: python
+  number: 0
+  script: "{{ PYTHON }} -m pip install . -vv"
+
+requirements:
+  host:
+    - python
+    - pip
+    - versioneer
+  run:
+    - python >=3.10
+    - access-nri-intake
+    - apscheduler
+    - panel
+    - matplotlib
+
+about:
+  home: https://github.com/ACCESS-NRI/med-live-diagnostics
+  license: Apache Software
+  license_family: APACHE
+  summary: "Interactive monitoring and diagnostic analyses of ACCESS climate models"
+  doc_url: https://med-live-diagnostics.readthedocs.io/en/latest
+
+extra:
+  recipe-maintainers:
+    - mtetley
+    - rbeucher

.gitattributes

@@ -0,0 +1 @@
+src/med_diagnostics/_version.py export-subst

.github/ISSUE_TEMPLATE/bug_report.md

@@ -0,0 +1,20 @@
+---
+name: Bug report
+about: Create an issue to report a bug
+title: "[BUG] <description of the bug>"
+labels: bug
+assignees: ''
+
+---
+
+# Describe the bug
+
+<Replace this text with a clear and concise description of the bug. You can add screen shots by dragging them into this panel. If your code errored, please include the traceback here.>
+
+# To Reproduce
+
+<Replace this text with a description of how to reproduce the bug. See [these guidelines](http://matthewrocklin.com/blog/work/2018/02/28/minimal-bug-reports) on how to provide a good bug report. Bug reports that follow these guidelines are easier to diagnose, and so are often handled much more quickly.>
+
+# Additional context
+
+<Replace this text with any other relevant information about the problem>

.github/ISSUE_TEMPLATE/feature_request.md

@@ -0,0 +1,24 @@
+---
+name: Feature request
+about: Create an issue to suggest an idea for this project
+title: ''
+labels: enhancement
+assignees: ''
+
+---
+
+# Is your feature request related to a problem? Please describe.
+
+<Replace this text with a clear and concise description of what the problem is.>
+
+# Describe the feature you'd like
+
+<Replace this text with a clear and concise description of what you want to happen.>
+
+# Describe alternatives you've considered
+
+<Replace this text with a clear and concise description of any alternative solutions or features you've considered.>
+
+# Additional context
+
+<Replace this text with any other relevant information about your suggestion>

.github/dependabot.yml

@@ -0,0 +1,11 @@
+# To get started with Dependabot version updates, you'll need to specify which
+# package ecosystems to update and where the package manifests are located.
+# Please see the documentation for all configuration options:
+# https://docs.github.com/github/administering-a-repository/configuration-options-for-dependency-updates
+
+version: 2
+updates:
+  - package-ecosystem: "github-actions"
+    directory: "/"
+    schedule:
+      interval: "weekly"

.github/workflows/cd.yml

@@ -0,0 +1,62 @@
+name: CD
+
+on: [push, pull_request]
+
+jobs:
+  pypi:
+    name: build and deploy to PyPI
+    if: github.repository == 'ACCESS-NRI/MED-live-diagnostics' && github.event_name == 'push' && startsWith(github.ref, 'refs/tags')
+    runs-on: "ubuntu-latest"
+    permissions:
+      id-token: write
+
+    steps:
+      - name: Checkout source
+        uses: actions/checkout@v3
+
+      - name: Set up Python 3.11
+        uses: actions/setup-python@v4
+        with:
+          python-version: 3.11
+
+      - name: Install build dependencies
+        run: python -m pip install build twine
+
+      - name: Build distributions
+        shell: bash -l {0}
+        run: |
+          git clean -xdf
+          pyproject-build
+
+      - name: Publish package to PyPI
+        uses: pypa/gh-action-pypi-publish@release/v1
+
+  conda:
+    name: build and deploy to conda
+    needs: pypi
+    if: always() && needs.pypi.result == 'success'
+    runs-on: "ubuntu-latest"
+
+    steps:
+      - name: Checkout source
+        uses: actions/checkout@v3
+
+      - name: Setup conda environment
+        uses: conda-incubator/setup-miniconda@v2
+        with:
+          miniconda-version: "latest"
+          python-version: 3.11
+          environment-file: .conda/environment.yml
+          auto-update-conda: false
+          auto-activate-base: false
+          show-channel-urls: true
+
+      - name: Build and upload the conda package
+        uses: uibcdf/[email protected]
+        with:
+          meta_yaml_dir: .conda
+          python-version: 3.11
+          user: accessnri
+          label: main
+          token: ${{ secrets.anaconda_token }}
+

pyproject.toml

@@ -0,0 +1,36 @@
+[project]
+name = "med-diagnostics"
+authors = [
+    { name = "ACCESS-NRI" },
+]
+description = "ACCESS MED-Diagnostics"
+readme = "README.md"
+requires-python = ">=3.10"
+license = {text = "APACHE-2.0"}
+classifiers = [
+    "Development Status :: 4 - Beta",
+    "Programming Language :: Python :: 3",
+    "License :: OSI Approved :: Apache Software License",
+    "Operating System :: OS Independent",
+]
+dependencies = ["apscheduler", "access-nri-intake", "panel",  "matplotlib"]
+dynamic = ["version"]
+
+[build-system]
+build-backend = "setuptools.build_meta"
+requires = [
+  "setuptools >= 61.0.0",
+  "versioneer[toml]",
+]
+
+
+[tool.setuptools.packages.find]
+where = ["src"]
+
+[tool.versioneer]
+VCS = "git"
+style = "pep440"
+versionfile_source = "src/med_diagnostics/_version.py"
+versionfile_build = "med_diagnostics/_version.py"
+tag_prefix = "v"
+parentdir_prefix = "med_diagnostics-"

setup.py

@@ -0,0 +1,8 @@
+#!/usr/bin/env python
+from setuptools import setup
+import versioneer
+
+setup(
+    version=versioneer.get_version(),
+    cmdclass=versioneer.get_cmdclass(),
+)

src/med_diagnostics/__init__.py

@@ -1 +1,3 @@
-from . import data, diagnostics, ui, session
+from . import data, diagnostics, ui, session
+from . import _version
+__version__ = _version.get_versions()['version']