scan-rs is a dependency of Cell Ranger, which contains a library of single cell analysis algorithms. Cell Ranger is a set of analysis pipelines that perform sample demultiplexing, barcode processing, single cell 3' and 5' gene counting, V(D)J transcript sequence assembly and annotation, and Feature Barcode analysis from 10x Genomics Chromium Single Cell data. The source code for Cell Ranger is available at https://github.com/10XGenomics/cellranger.
- bhtsne: t-SNE
- blas-src: BLAS source
- cephes: probability distribution functions
- diff-exp: differential expression
- hclust: hierarchical clustering
- hdf5-io: HDF5 file I/O
- leiden: Leiden / Louvain clustering
- scan-rs: single-cell analysis algorithms
- scan-types: common types
- snoop: progress and cancellation snooping
- sqz: sparse count matrix
- tools: command-line interface
- umap-rs: UMAP
Please note this source code is made available only for informational purposes. 10x does not provide support for interpreting, modifying, building, or running this code.
The officially supported release binaries are available at https://www.10xgenomics.com/support/software/cell-ranger/downloads. Cell Ranger documentation is available at https://www.10xgenomics.com/support/software/cell-ranger.