error[E0277]: the trait bound `transcript::ContigStatus: annotate::_::_serde::Serialize` is not satisfied --> vdj_ann/src/annotate.rs:2972:17 | 2972 | #[derive(Debug, Serialize, Deserialize, Clone, PartialEq)] | ^^^^^^^^^ the trait `annotate::_::_serde::Serialize` is not implemented for `transcript::ContigStatus` ... 3021 | #[serde(skip_serializing_if = "Option::is_none")] | - required by a bound introduced by this call | = help: the following other types implement trait `annotate::_::_serde::Serialize`: &'a T &'a mut T () (T0, T1) (T0, T1, T2) (T0, T1, T2, T3) (T0, T1, T2, T3, T4) (T0, T1, T2, T3, T4, T5) and 154 others = note: required for `std::option::Option<transcript::ContigStatus>` to implement `annotate::_::_serde::Serialize` note: required by a bound in `annotate::_::_serde::ser::SerializeStruct::serialize_field` --> /home/runner/.cargo/registry/src/index.crates.io-6f17d22bba15001f/serde-1.0.188/src/ser/mod.rs:1865:12 | 1865 | T: Serialize; | ^^^^^^^^^ required by this bound in `SerializeStruct::serialize_field`

error[E0277]: the trait bound `transcript::ContigStatus: annotate::_::_serde::Deserialize<'_>` is not satisfied --> vdj_ann/src/annotate.rs:3022:30 | 3022 | pub productive_criteria: Option<ContigStatus>, | ^^^^^^^^^^^^^^^^^^^^ the trait `annotate::_::_serde::Deserialize<'_>` is not implemented for `transcript::ContigStatus` | = help: the following other types implement trait `annotate::_::_serde::Deserialize<'de>`: &'a [u8] &'a std::path::Path &'a str () (T0, T1) (T0, T1, T2) (T0, T1, T2, T3) (T0, T1, T2, T3, T4) and 160 others = note: required for `std::option::Option<transcript::ContigStatus>` to implement `annotate::_::_serde::Deserialize<'_>` note: required by a bound in `annotate::_::_serde::de::SeqAccess::next_element` --> /home/runner/.cargo/registry/src/index.crates.io-6f17d22bba15001f/serde-1.0.188/src/de/mod.rs:1724:12 | 1724 | T: Deserialize<'de>, | ^^^^^^^^^^^^^^^^ required by this bound in `SeqAccess::next_element`

error[E0277]: the trait bound `transcript::ContigStatus: annotate::_::_serde::Deserialize<'_>` is not satisfied --> vdj_ann/src/annotate.rs:3022:30 | 3022 | pub productive_criteria: Option<ContigStatus>, | ^^^^^^^^^^^^^^^^^^^^ the trait `annotate::_::_serde::Deserialize<'_>` is not implemented for `transcript::ContigStatus` | = help: the following other types implement trait `annotate::_::_serde::Deserialize<'de>`: &'a [u8] &'a std::path::Path &'a str () (T0, T1) (T0, T1, T2) (T0, T1, T2, T3) (T0, T1, T2, T3, T4) and 160 others = note: required for `std::option::Option<transcript::ContigStatus>` to implement `annotate::_::_serde::Deserialize<'_>` note: required by a bound in `annotate::_::_serde::de::MapAccess::next_value` --> /home/runner/.cargo/registry/src/index.crates.io-6f17d22bba15001f/serde-1.0.188/src/de/mod.rs:1863:12 | 1863 | V: Deserialize<'de>, | ^^^^^^^^^^^^^^^^ required by this bound in `MapAccess::next_value`

error[E0277]: the trait bound `transcript::ContigStatus: annotate::_::_serde::Deserialize<'_>` is not satisfied --> vdj_ann/src/annotate.rs:3021:5 | 3021 | #[serde(skip_serializing_if = "Option::is_none")] | ^ the trait `annotate::_::_serde::Deserialize<'_>` is not implemented for `transcript::ContigStatus` | = help: the following other types implement trait `annotate::_::_serde::Deserialize<'de>`: &'a [u8] &'a std::path::Path &'a str () (T0, T1) (T0, T1, T2) (T0, T1, T2, T3) (T0, T1, T2, T3, T4) and 160 others = note: required for `std::option::Option<transcript::ContigStatus>` to implement `annotate::_::_serde::Deserialize<'_>` note: required by a bound in `annotate::_::_serde::__private::de::missing_field` --> /home/runner/.cargo/registry/src/index.crates.io-6f17d22bba15001f/serde-1.0.188/src/private/de.rs:25:8 | 25 | V: Deserialize<'de>, | ^^^^^^^^^^^^^^^^ required by this bound in `missing_field`

error[E0277]: the trait bound `transcript::ContigStatus: std::default::Default` is not satisfied --> vdj_ann/src/transcript.rs:174:15 | 174 | ..Default::default() | ^^^^^^^^^^^^^^^^ the trait `std::default::Default` is not implemented for `transcript::ContigStatus` | help: consider annotating `transcript::ContigStatus` with `#[derive(Default)]` | 25 | #[derive(Default)] |

error[E0599]: no variant or associated item named `from_str` found for enum `VdjChain` in the current scope --> vdj_ann/src/transcript.rs:266:32 | 266 | .map(|chain| VdjChain::from_str(chain).unwrap()) | ^^^^^^^^ variant or associated item not found in `VdjChain` | = help: items from traits can only be used if the trait is in scope help: the following trait is implemented but not in scope; perhaps add a `use` for it: | 5 | use std::str::FromStr; |

error[E0599]: no function or associated item named `default` found for struct `ContigStatus` in the current scope --> vdj_ann/src/transcript.rs:274:27 | 25 | pub struct ContigStatus { | ----------------------- function or associated item `default` not found for this struct ... 274 | (false, ContigStatus::default()) | ^^^^^^^ function or associated item not found in `ContigStatus` | = help: items from traits can only be used if the trait is implemented and in scope = note: the following trait defines an item `default`, perhaps you need to implement it: candidate #1: `std::default::Default`

Clippy had exited with the 101 exit code

Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/cache@v3, 10XGenomics/clippy-check@main. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.