This repository has been archived by the owner on Feb 23, 2024. It is now read-only.
Fix overflow bugs in VDJ FR3 start identification. #997
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| name: Test | |
| on: | |
| pull_request: | |
| push: | |
| branches: | |
| - master | |
| permissions: | |
| contents: read | |
| # Write permissions are required in order to produce annotations. | |
| checks: write | |
| jobs: | |
| rust: | |
| runs-on: ubuntu-20.04 | |
| steps: | |
| - uses: dtolnay/rust-toolchain@master | |
| with: | |
| toolchain: 1.68.0 | |
| components: rustfmt, clippy | |
| - name: Checkout git repository | |
| uses: actions/checkout@master | |
| - name: Check Rust formatting | |
| run: cargo fmt -- --check | |
| - name: Install cargo-deny | |
| run: | | |
| wget https://github.com/EmbarkStudios/cargo-deny/releases/download/0.13.7/cargo-deny-0.13.7-x86_64-unknown-linux-musl.tar.gz | |
| tar -xvf cargo-deny-0.13.7-x86_64-unknown-linux-musl.tar.gz | |
| mkdir -p ~/bin/ | |
| cp cargo-deny-0.13.7-x86_64-unknown-linux-musl/cargo-deny ~/bin/ | |
| rm -r cargo-deny-* | |
| echo "$HOME/bin" >> $GITHUB_PATH | |
| - name: Cache cargo registry | |
| uses: actions/cache@v3 | |
| with: | |
| path: ~/.cargo/registry | |
| key: ${{runner.os}}-cargo-registry-${{hashFiles('Cargo.lock')}} | |
| restore-keys: ${{runner.os}}-cargo-registry- | |
| - name: Cache cargo git index | |
| uses: actions/cache@v3 | |
| with: | |
| path: ~/.cargo/git | |
| key: ${{runner.os}}-cargo-git-${{hashFiles('Cargo.lock')}} | |
| restore-keys: ${{runner.os}}-cargo-git- | |
| - name: Cache cargo build --release --all-targets | |
| uses: actions/cache@v3 | |
| with: | |
| path: target | |
| key: ${{runner.os}}-cargo-target-${{hashFiles('Cargo.lock')}}-${{hashFiles('**/Cargo.toml')}} | |
| restore-keys: | | |
| ${{runner.os}}-cargo-target- | |
| - name: Remove the Cargo target directory | |
| if: github.ref == 'refs/heads/master' | |
| run: cargo clean | |
| - name: Deny duplicate dependencies and check licenses | |
| run: cargo deny --locked check | |
| - uses: 10XGenomics/clippy-check@main | |
| with: | |
| # TODO: re-enable some the -A lints below once we're clean on other | |
| # more important ones. | |
| args: | | |
| --all-features --all-targets --locked --release -- | |
| -D clippy::perf | |
| -D clippy::style | |
| -D unused | |
| -D clippy::redundant_closure_for_method_calls | |
| -D clippy::wildcard_imports | |
| -W clippy::float_cmp | |
| -W future_incompatible | |
| -W nonstandard_style | |
| -W rust_2018_compatibility | |
| -W rust_2021_compatibility | |
| -F clippy::unused_io_amount | |
| -A clippy::many_single_char_names | |
| -A clippy::comparison_chain | |
| -A clippy::needless_range_loop | |
| - name: Cargo check | |
| run: RUSTFLAGS="-D unused -D warnings" cargo check --frozen --all-targets --release | |
| - name: Build tests | |
| run: cargo test --no-run --frozen --release | |
| - name: Run Rust tests | |
| run: cargo test --frozen --release -- --nocapture |