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feat: Return the status of unproductive contigs in is_valid function #942
nmmsv10xAnnotations
10 warnings
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calling `set_len()` immediately after reserving a buffer creates uninitialized values:
vector_utils/src/lib.rs#L490
warning: calling `set_len()` immediately after reserving a buffer creates uninitialized values
--> vector_utils/src/lib.rs:490:5
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490 | x.reserve(n);
| ^^^^^^^^^^^^^
491 | x.set_len(n); /* unsafe */
| ^^^^^^^^^^^^
|
= help: initialize the buffer or wrap the content in `MaybeUninit`
= help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#uninit_vec
note: the lint level is defined here
--> vector_utils/src/lib.rs:487:8
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487 | #[warn(clippy::uninit_vec)]
| ^^^^^^^^^^^^^^^^^^
|
|
this function has too many arguments (9/7):
pretty_trace/src/lib.rs#L764
warning: this function has too many arguments (9/7)
--> pretty_trace/src/lib.rs:764:1
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764 | / fn force_pretty_trace_fancy(
765 | | log_file_name: String,
766 | | fd: i32,
767 | | exit_message: Option<String>,
... |
773 | | function_to_run: Option<fn(&str) -> ()>,
774 | | ) {
| |__^
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= help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#too_many_arguments
= note: `#[warn(clippy::too_many_arguments)]` on by default
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this function has too many arguments (8/7):
vdj_ann/src/annotate.rs#L227
warning: this function has too many arguments (8/7)
--> vdj_ann/src/annotate.rs:227:1
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227 | / pub fn annotate_seq_core(
228 | | b: &DnaString,
229 | | refdata: &RefData,
230 | | ann: &mut Vec<(i32, i32, i32, i32, i32)>,
... |
235 | | verbose: bool,
236 | | ) {
| |__^
|
= help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#too_many_arguments
= note: `#[warn(clippy::too_many_arguments)]` on by default
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strict comparison of `f32` or `f64`:
vdj_ann/src/annotate.rs#L1595
warning: strict comparison of `f32` or `f64`
--> vdj_ann/src/annotate.rs:1595:54
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1595 | let c1 = m1 == m2 && !have_utr_align2 && err1_nu == err2_nu && outside1 > outside2;
| ^^^^^^^^^^^^^^^^^^ help: consider comparing them within some margin of error: `(err1_nu - err2_nu).abs() < error_margin`
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= note: `f32::EPSILON` and `f64::EPSILON` are available for the `error_margin`
= help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#float_cmp
= note: requested on the command line with `-W clippy::float-cmp`
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strict comparison of `f32` or `f64`:
vdj_ann/src/annotate.rs#L1596
warning: strict comparison of `f32` or `f64`
--> vdj_ann/src/annotate.rs:1596:54
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1596 | let c2 = m2 == m1 && !have_utr_align1 && err2_nu == err1_nu && outside2 > outside1;
| ^^^^^^^^^^^^^^^^^^ help: consider comparing them within some margin of error: `(err2_nu - err1_nu).abs() < error_margin`
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= note: `f32::EPSILON` and `f64::EPSILON` are available for the `error_margin`
= help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#float_cmp
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strict comparison of `f32` or `f64`:
vdj_ann/src/annotate.rs#L1605
warning: strict comparison of `f32` or `f64`
--> vdj_ann/src/annotate.rs:1605:37
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1605 | || (m1 == m2 && err1 == err2 && outside1 > outside2)
| ^^^^^^^^^^^^ help: consider comparing them within some margin of error: `(err1 - err2).abs() < error_margin`
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= note: `f32::EPSILON` and `f64::EPSILON` are available for the `error_margin`
= help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#float_cmp
|
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strict comparison of `f32` or `f64`:
vdj_ann/src/annotate.rs#L1606
warning: strict comparison of `f32` or `f64`
--> vdj_ann/src/annotate.rs:1606:37
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1606 | || (m1 == m2 && err1 == err2 && outside1 == outside2 && t1 < t2)
| ^^^^^^^^^^^^ help: consider comparing them within some margin of error: `(err1 - err2).abs() < error_margin`
|
= note: `f32::EPSILON` and `f64::EPSILON` are available for the `error_margin`
= help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#float_cmp
|
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strict comparison of `f32` or `f64`:
vdj_ann/src/annotate.rs#L1606
warning: strict comparison of `f32` or `f64`
--> vdj_ann/src/annotate.rs:1606:53
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1606 | || (m1 == m2 && err1 == err2 && outside1 == outside2 && t1 < t2)
| ^^^^^^^^^^^^^^^^^^^^ help: consider comparing them within some margin of error: `(outside1 - outside2).abs() < error_margin`
|
= note: `f32::EPSILON` and `f64::EPSILON` are available for the `error_margin`
= help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#float_cmp
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strict comparison of `f32` or `f64`:
vdj_ann/src/annotate.rs#L1622
warning: strict comparison of `f32` or `f64`
--> vdj_ann/src/annotate.rs:1622:37
|
1622 | || (m2 == m1 && err2 == err1 && outside2 > outside1)
| ^^^^^^^^^^^^ help: consider comparing them within some margin of error: `(err2 - err1).abs() < error_margin`
|
= note: `f32::EPSILON` and `f64::EPSILON` are available for the `error_margin`
= help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#float_cmp
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strict comparison of `f32` or `f64`:
vdj_ann/src/annotate.rs#L1623
warning: strict comparison of `f32` or `f64`
--> vdj_ann/src/annotate.rs:1623:37
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1623 | || (m2 == m1 && err2 == err1 && outside2 == outside1 && t2 < t1)
| ^^^^^^^^^^^^ help: consider comparing them within some margin of error: `(err2 - err1).abs() < error_margin`
|
= note: `f32::EPSILON` and `f64::EPSILON` are available for the `error_margin`
= help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#float_cmp
|