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I have fastq files with read group IDs in the header. Those end up in the mapped SAM file. I wanted to know if biscuit markdup is aware of different read groups when marking duplicates or if I have to split the reads by read group. I think Picard is readgroup-aware.
The text was updated successfully, but these errors were encountered:
I have fastq files with read group IDs in the header. Those end up in the mapped SAM file. I wanted to know if biscuit markdup is aware of different read groups when marking duplicates or if I have to split the reads by read group. I think Picard is readgroup-aware.
The text was updated successfully, but these errors were encountered: