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Make biscuit markdup readgroup-aware #28

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okartal opened this issue Jan 7, 2019 · 0 comments
Open

Make biscuit markdup readgroup-aware #28

okartal opened this issue Jan 7, 2019 · 0 comments

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@okartal
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okartal commented Jan 7, 2019

I have fastq files with read group IDs in the header. Those end up in the mapped SAM file. I wanted to know if biscuit markdup is aware of different read groups when marking duplicates or if I have to split the reads by read group. I think Picard is readgroup-aware.

zwdzwd pushed a commit that referenced this issue Aug 13, 2023
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