Header for snp bed file

[smcnew]

Hi: I'm wondering where to find information on what the columns are produced by the vcf2bed -t snp file. I got an output file that has the following columns:

100056 34 35 A G 1/1 G3 3 1.00

I'm guessing the first series is chromosome, start position, stop position, major allele, minor allele, genotype; however I can't figure out what the last three ("G3", "3", "1.00") values refer to.
Any help is greatly appreciated.

More generally- if there's an option to add headers to the gc, snp, and other .bed files I'd appreciate knowing how.

Thanks!

[zwdzwd]

Hi I think the last three columns represent the allele support, total read depth, and allele frequency. There is currently not an option to add bed headers. But I will add it to my list.

Best,

[smcnew]

Thanks so much! Sabrina

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On Tue, Dec 18, 2018 at 3:40 PM Wanding Zhou - Bioinformatics < ***@***.***> wrote: Hi I think the last three columns represent the allele support, total read depth, and allele frequency. There is currently not an option to add bed headers. But I will add it to my list. Best, — You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub <#26 (comment)>, or mute the thread <https://github.com/notifications/unsubscribe-auth/Ae-F7PBjdOAAUFQeD3PjWnFZUjAlvwJsks5u6VK3gaJpZM4ZY5RO> .