provide option to make a 'presentation' video

[d2fong]

• would include when the stimulator turns on and off in the video

[d2fong]

new options:

• avi, avi(for presentation)

[d2fong]

sample python script for generating avi files:

import os
from ij import IJ, ImagePlus, ImageStack
from ij.io import Opener
from ij.plugin.filter import AVI_Writer
from ij.measure import Calibration




def is_tif_file(f):
	return f.split('.')[1] == 'tiff'

def tif_sort_key(f):
	return int(f.split('.')[0])

DIR = '/Users/dylan/data/full_tiff_stacks/jun/temp16/'
	
file_list = [ f for f in os.listdir(DIR) if is_tif_file(f)]
file_list.sort(key=tif_sort_key)

s = ImageStack()
o = Opener()

for f in file_list:
	imp = o.openTiff(DIR, f)
	s.addSlice(imp.getProcessor())

imp_to_avi = ImagePlus("avi", s)
ip = imp_to_avi.getProcessor()
#c = imp_to_avi.getCalibration()
#c.fps = 10.0
#imp_to_avi.setCalibration(c)
writer = AVI_Writer()

writer.writeImage(imp_to_avi, DIR + 'test.avi', 0, 0)

	
#f = FolderOpener()
#i = f.open('/Users/dylan/data/full_tiff_stacks/jun/temp16')
#print f.trimFileList([".csv"])
#print(i)

[d2fong]

IJ.run("Open...", "");
IJ.run(imp, "Image Sequence...", "open=/Users/dylan/data/full_tiff_stacks/jun/temp16-raw sort use");
IJ.run(imp, "AVI... ", "compression=JPEG frame=10 save=/Users/dylan/data/full_tiff_stacks/jun/temp16-raw/temp16-raw.avi");

[d2fong]

this works

imp = FolderOpener.open("/Users/dylan/data/full_tiff_stacks/jun/temp16-raw/", "virtual");
IJ.run(i, "AVI... ", "compression=JPEG frame=10 save=/Users/dylan/data/full_tiff_stacks/jun/temp16-raw.avi");

[d2fong]

from ij import IJ, ImagePlus
from ij.plugin import FolderOpener

imp = FolderOpener.open("/Users/dylan/data/full_tiff_stacks/jun/temp16-raw/", "virtual");
IJ.run(imp, "AVI... ", "compression=None frame=10 save=/Users/dylan/data/full_tiff_stacks/jun/temp16-raw.avi");

[d2fong]

add text to

from ij import IJ, ImagePlus
from ij.plugin import FolderOpener
from ij.gui import TextRoi

i = IJ.getImage()
ip = i.getProcessor()
ip.drawString("Stimulator On", 0, 200)

i.setProcessor(ip)
i.show()

from ij import IJ, ImagePlus;
from ij.gui import TextRoi
from java.awt import Font;
#import ij.gui.TextRoi;

i = IJ.getImage()
ip = i.getProcessor()

f = Font("Arial", 0, 20)
ip.setFont(f)
ip.setColor(1048575)  # white
ip.drawString("Stimulator On")

i.setProcessor(ip)
i.show()