Cannot install music 1.0.0. with R 3.6.3

[alexdray86]

Here is the error :

Downloading GitHub repo xuranw/MuSiC@HEAD

MatrixModels (0.5-0 -> 0.5-1) [CRAN]
rlang (1.0.2 -> 1.0.6) [CRAN]
lifecycle (1.0.1 -> 1.0.3) [CRAN]
cli (3.3.0 -> 3.4.1) [CRAN]
vctrs (0.4.1 -> 0.5.0) [CRAN]
farver (2.1.0 -> 2.1.1) [CRAN]
quantreg (5.93 -> 5.94 ) [CRAN]
tibble (3.1.7 -> 3.1.8) [CRAN]
isoband (0.2.5 -> 0.2.6) [CRAN]
MCMCpack (1.4-8 -> 1.6-3) [CRAN]
ggplot2 (3.3.6 -> 3.4.0) [CRAN]
Skipping 3 packages not available: SingleCellExperiment, Biobase, TOAST

Installing 12 packages: MatrixModels, rlang, lifecycle, cli, vctrs, farver, quantreg, tibble, isoband, MCMCpack, TOAST, ggplot2

Warning message:
“package ‘TOAST’ is not available (for R version 3.6.3)”
also installing the dependency ‘Matrix’

There are binary versions available but the source versions are later:
binary source needs_compilation
Matrix 1.3-4 1.5-1 TRUE
MatrixModels 0.5-0 0.5-1 FALSE
rlang 1.0.1 1.0.6 TRUE
lifecycle 1.0.1 1.0.3 FALSE
cli 3.1.1 3.4.1 TRUE
vctrs 0.3.8 0.5.0 TRUE
farver 2.1.0 2.1.1 TRUE
quantreg 5.85 5.94 TRUE
tibble 3.1.6 3.1.8 TRUE
isoband 0.2.5 0.2.6 TRUE
MCMCpack 1.6-0 1.6-3 TRUE
ggplot2 3.3.5 3.4.0 FALSE

installing the source packages ‘Matrix’, ‘MatrixModels’, ‘rlang’, ‘lifecycle’, ‘cli’, ‘vctrs’, ‘farver’, ‘quantreg’, ‘tibble’, ‘isoband’, ‘MCMCpack’, ‘ggplot2’

Warning message in i.p(...):
“installation of package ‘Matrix’ had non-zero exit status”
Warning message in i.p(...):
“installation of package ‘rlang’ had non-zero exit status”
Warning message in i.p(...):
“installation of package ‘cli’ had non-zero exit status”
Warning message in i.p(...):
“installation of package ‘farver’ had non-zero exit status”
Warning message in i.p(...):
“installation of package ‘isoband’ had non-zero exit status”
Warning message in i.p(...):
“installation of package ‘MatrixModels’ had non-zero exit status”
Warning message in i.p(...):
“installation of package ‘lifecycle’ had non-zero exit status”
Warning message in i.p(...):
“installation of package ‘vctrs’ had non-zero exit status”
Warning message in i.p(...):
“installation of package ‘quantreg’ had non-zero exit status”
Warning message in i.p(...):
“installation of package ‘tibble’ had non-zero exit status”
Warning message in i.p(...):
“installation of package ‘MCMCpack’ had non-zero exit status”
Warning message in i.p(...):
“installation of package ‘ggplot2’ had non-zero exit status”
✔ checking for file ‘/private/var/folders/z6/0fzn0d4s1v74_s44tjrc9mg00000gp/T/Rtmpma5EHU/remotes129a54a8e32c1/xuranw-MuSiC-0a3e3af/DESCRIPTION’
─ preparing ‘MuSiC’:
✔ checking DESCRIPTION meta-information
─ checking for LF line-endings in source and make files and shell scripts
─ checking for empty or unneeded directories
─ building ‘MuSiC_1.0.0.tar.gz’

Warning message in i.p(...):
“installation of package ‘/var/folders/z6/0fzn0d4s1v74_s44tjrc9mg00000gp/T//Rtmpma5EHU/file129a55b1c892d/MuSiC_1.0.0.tar.gz’ had non-zero exit status”

And then, library(MuSiC) does not work. It seems that all these updates fail because they need R>4.0

Thanks in advance,

Alexandre Coudray
PhD student at EPFL. Lausanne