Combining multiple (different modality) sce objects to MAE

[JHYSiu]

Hi

Sorry, I couldn't find this info but is there a way that I can combine my RNA sce object and ADT sce object (from same experiment) into a MAE? We had previously exported everything as a uni-modal sce object.

Thanks!

[lwaldron]

Sure! Here is an example, although we used matrices instead of SCE objects: https://www.bioconductor.org/packages/release/data/experiment/vignettes/SingleCellMultiModal/inst/doc/CITEseq.html

[LiNk-NY]

Hi Jacqueline, @JHYSiu
Sorry I just saw your message! Let me know if you need further assistance for this. Note that we have prepMultiAssay for helping map experiment columns and primary identifiers.
PS. Feel free to @ me.