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references.bib
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@article{calleja2023predictors,
title={Structural predictors of species survival in complex ecological communities },
author={Calleja-Solanas, Violeta and Hern{\'a}ndez - Garc{\'i}a, Emilio and Saiz, Hugo and Meloni, Sandro},
journal={submitted},
year={2023}
}
@article{calleja2023macropatterns,
title={Universal macropatterns in information ecosystems},
author={Calleja-Solanas, Violeta and Palazzi, Mar\'{\i}a J. and Plata, Carlos A. and Sol\'e-Ribalta, Albert and Borge-Holthoefer, Javier and Suweis, Samir and Meloni, Sandro},
journal={submitted},
year={2023}
}
@book{carroll2016serengeti,
title={The Serengeti rules: the quest to discover how life works and why it matters},
author={Carroll, Sean B},
year={2016},
publisher={Princeton University Press}
}
@article{melian2009diversity,
title={Diversity in a complex ecological network with two interaction types},
author={Meli{\'a}n, Carlos J and Bascompte, Jordi and Jordano, Pedro and Krivan, Vlastimil},
journal={Oikos},
volume={118},
number={1},
pages={122--130},
year={2009},
publisher={Wiley Online Library}
}
@book{ghazoul2020ecology,
title={Ecology: A Very Short Introduction},
author={Ghazoul, Jaboury},
year={2020},
publisher={Oxford University Press}
}
@article{axelrod1981evolution,
title={The evolution of cooperation},
author={Axelrod, Robert and Hamilton, William D},
journal={science},
volume={211},
number={4489},
pages={1390--1396},
year={1981},
publisher={American Association for the Advancement of Science}
}
@article{mora2011many,
title={How many species are there on Earth and in the ocean?},
author={Mora, Camilo and Tittensor, Derek P and Adl, Sina and Simpson, Alastair GB and Worm, Boris},
journal={PLoS biology},
volume={9},
number={8},
pages={e1001127},
year={2011},
publisher={Public Library of Science}
}
@article{verberk2011explaining,
title={Explaining general patterns in species abundance and distributions},
author={Verberk, WCEP and others},
journal={Nature Education Knowledge},
volume={3},
number={10},
pages={38},
year={2011}
}
@article{levin1998ecosystems,
title={Ecosystems and the biosphere as complex adaptive systems},
author={Levin, Simon A},
journal={Ecosystems},
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pages={431--436},
year={1998},
publisher={Springer}
}
@book{zipf1999psycho,
title={The psycho-biology of language: An introduction to dynamic philology},
author={Zipf, George Kingsley},
volume={21},
year={1999},
publisher={Psychology Press}
}
@article{calleja2022structured,
title={Structured interactions as a stabilizing mechanism for competitive ecological communities},
author={Calleja-Solanas, Violeta and Khalil, Nagi and G{\'o}mez-Garde{\~n}es, Jes{\'u}s and Hern{\'a}ndez - Garc{\'i}a, Emilio and Meloni, Sandro},
journal={Physical Review E},
volume={106},
number={6},
pages={064307},
year={2022},
publisher={APS}
}
@article{heleno2014ecological,
title={Ecological networks: delving into the architecture of biodiversity},
author={Heleno, Ruben and Garcia, Cristina and Jordano, Pedro and Traveset, Anna and G{\'o}mez, Jos{\'e} Maria and Bl{\"u}thgen, Nico and Memmott, Jane and Moora, Mari and Cerdeira, Jorge and Rodr{\'i}guez-Echeverr{\'i}a, Susana and others},
year={2014},
publisher={The Royal Society},
journal={Biological Letters}
}
@article{maynard2017diversity,
title={Diversity begets diversity in competition for space},
author={Maynard, Daniel S and Bradford, Mark A and Lindner, Daniel L and van Diepen, Linda TA and Frey, Serita D and Glaeser, Jessie A and Crowther, Thomas W},
journal={Nature Ecology \& Evolution},
volume={1},
number={6},
pages={1--8},
year={2017},
publisher={Nature Publishing Group}
}
@article{buss1979competitive,
title={Competitive networks: nontransitive competitive relationships in cryptic coral reef environments},
author={Buss, LW and Jackson, JBC},
journal={The American Naturalist},
volume={113},
number={2},
pages={223--234},
year={1979},
publisher={University of Chicago Press}
}
@article{szolnoki2004phase,
title={Phase transitions for rock-scissors-paper game on different networks},
author={Szolnoki, Attila and Szab{\'o}, Gy{\"o}rgy},
journal={Physical Review E},
volume={70},
number={3},
pages={037102},
year={2004},
publisher={APS}
}
@article{battiston2021physics,
title={The physics of higher-order interactions in complex systems},
author={Battiston, Federico and Amico, Enrico and Barrat, Alain and Bianconi, Ginestra and Ferraz de Arruda, Guilherme and Franceschiello, Benedetta and Iacopini, Iacopo and K{\'e}fi, Sonia and Latora, Vito and Moreno, Yamir and others},
journal={Nature Physics},
volume={17},
number={10},
pages={1093--1098},
year={2021},
publisher={Nature Publishing Group}
}
@article{Hofbauer1979,
title = {{A note on evolutionary stable strategies and game dynamics}},
year = {1979},
journal = {Journal of Theoretical Biology},
author = {Hofbauer, J. and Schuster, P. and Sigmund, K.},
number = {3},
month = {12},
pages = {609--612},
volume = {81},
url = {https://linkinghub.elsevier.com/retrieve/pii/0022519379900584},
doi = {10.1016/0022-5193(79)90058-4},
issn = {00225193}
}
@article{Kefi2019a,
title = {{Advancing our understanding of ecological stability}},
year = {2019},
journal = {Ecology Letters},
author = {K{\'{e}}fi, Sonia and Dom{\'{i}}nguez‐Garc{\'{i}}a, Virginia and Donohue, Ian and Fontaine, Colin and Th{\'{e}}bault, Elisa and Dakos, Vasilis},
editor = {Coulson, Tim},
number = {9},
month = {9},
pages = {1349--1356},
volume = {22},
url = {https://onlinelibrary.wiley.com/doi/abs/10.1111/ele.13340},
doi = {10.1111/ele.13340},
issn = {1461-023X},
keywords = {Permanence, persistence, recovery, resilience, resistance, robustness, variability}
}
@article{Liao2016,
title = {{An extended patch-dynamic framework for food chains in fragmented landscapes}},
year = {2016},
journal = {Scientific Reports},
author = {Liao, Jinbao and Chen, Jiehong and Ying, Zhixia and Hiebeler, David E. and Nijs, Ivan},
number = {May},
pages = {1--11},
volume = {6},
publisher = {Nature Publishing Group},
url = {http://dx.doi.org/10.1038/srep33100},
doi = {10.1038/srep33100},
issn = {20452322}
}
@article{Bartomeus2018a,
title = {{Biotic controls of plant coexistence}},
year = {2018},
journal = {Journal of Ecology},
author = {Bartomeus, Ignasi and Godoy, Oscar},
number = {5},
pages = {1767--1772},
volume = {106},
doi = {10.1111/1365-2745.13040},
issn = {13652745},
keywords = {antagonisms, apparent competition, fitness, multitrophic interactions, mutualisms, niche}
}
@article{Roy2019,
title = {{Can endogenous fluctuations persist in high-diversity ecosystems?}},
year = {2019},
journal = {arXiv: 1908.03348},
author = {Roy, Felix and Barbier, Matthieu and Biroli, Giulio and Bunin, Guy},
pages = {1--15},
url = {http://arxiv.org/abs/1908.03348},
arxivId = {1908.03348}
}
@article{Chave2013,
title = {{Comparing classical community models : Theoretical consequences for patterns of diveristy}},
year = {2013},
journal = {The American Naturalist},
author = {Chave, Jérôme and Landau, Helene C Muller and Levin, Simon A},
number = {1},
pages = {1--23},
volume = {159},
keywords = {abstract, communities of sessile organisms, density dependence, dispersal, ecological community, mechanisms proposed to explain, neutral model, spatial ecology, species diversity within ecological, the maintenance of, trade-off model}
}
@inproceedings{silva2002patterns,
title={Patterns of fruit-frugivore interactions in two Atlantic forest bird communities of South-eastern Brazil: implications for conservation.},
author={Silva, WR and Marco J{\'u}nior, P de and Hasui, E and Gomes, VSM and others},
booktitle={Seed dispersal and frugivory: ecology, evolution and conservation. Third International Symposium-Workshop on Frugivores and Seed Dispersal, S{\~a}o Pedro, Brazil, 6-11 August 2000},
pages={423--435},
year={2000},
organization={CABI publishing}
}
@article{Laird2015,
title = {{Competitive intransitivity, population interaction structure, and strategy coexistence}},
year = {2015},
journal = {Journal of Theoretical Biology},
author = {Laird, Robert A. and Schamp, Brandon S.},
month = {1},
pages = {149--158},
volume = {365},
url = {https://linkinghub.elsevier.com/retrieve/pii/S0022519314005992},
doi = {10.1016/j.jtbi.2014.10.010},
issn = {00225193}
}
@article{Laird2008,
title = {{Does local competition increase the coexistence of species in intransitive networks?}},
year = {2008},
journal = {Ecology},
author = {Laird, Robert A. and Schamp, Brandon S.},
number = {1},
pages = {237--247},
volume = {89},
doi = {10.1890/07-0117.1},
issn = {00129658},
keywords = {Aggregation, Biodiversity, Cellular automaton, Coexistence, Competition, Global competition, Intransitivity, Lattice model, Local competition, Species coexistence}
}
@article{raducha2022coordination,
title={Coordination and equilibrium selection in games: the role of local effects},
author={Raducha, Tomasz and San Miguel, Maxi},
journal={Scientific Reports},
volume={12},
number={1},
pages={3373},
year={2022},
publisher={Nature Publishing Group UK London}
}
@article{herrera1988pollination,
title={Pollination relationships in southern Spanish Mediterranean shrublands},
author={Herrera, Javier},
journal={The Journal of Ecology},
pages={274--287},
year={1988},
volume={76},
publisher={JSTOR}
}
@phdthesis{bek2006pollination,
title={A pollination network from a Danish forest meadow},
author={Bek, S},
year={2006},
school={Aarhus University, Denmark}
}
@article{dupont2009ecological,
title={Ecological modules and roles of species in heathland plant-insect flower visitor networks},
author={Dupont, Yoko L and Olesen, Jens M},
journal={Journal of Animal Ecology},
pages={346--353},
year={2009},
volume = {78},
publisher={JSTOR}
}
@article{soliveres2015intransitive,
title={Intransitive competition is widespread in plant communities and maintains their species richness},
author={Soliveres, Santiago and Maestre, Fernando T and Ulrich, Werner and Manning, Peter and Boch, Steffen and Bowker, Matthew A and Prati, Daniel and Delgado-Baquerizo, Manuel and Quero, Jos{\'e} L and Sch{\"o}ning, Ingo and others},
journal={Ecology letters},
volume={18},
number={8},
pages={790--798},
year={2015},
publisher={Wiley Online Library}
}
@article{estrada2016,
title = {{Epidemic spreading in random rectangular networks}},
year = {2016},
journal = {Physical Review E},
author = {Estrada, Ernesto and Meloni, Sandro and Sheerin, Matthew and Moreno, Yamir},
number = {5},
month = {11},
pages = {052316},
volume = {94},
publisher = {American Physical Society},
url = {https://link.aps.org/doi/10.1103/PhysRevE.94.052316},
doi = {10.1103/PhysRevE.94.052316},
issn = {2470-0045}
}
@article{de2019complexity,
title={Complexity explained},
author={De Domenico, Manlio and Brockmann, Dirk and Camargo, CQ and Gershenson, Carlos and Goldsmith, Daniel and Jeschonnek, Sabine and Kay, Lorren and Nichele, Stefano and Nicol{\'a}s, J and Schmickl, Thomas and others},
year={2019},
publisher={Complexity Explained project}
}
@book{page2018model,
title={The model thinker: What you need to know to make data work for you},
author={Page, Scott E},
year={2018},
publisher={Basic Books}
}
@article{arias2018,
abstract = {Here we develop an epidemic model that accounts for long-range dispersal of pathogens between plants. This model generalizes the classical compartmental models--Susceptible-Infected-Susceptible (SIS) and Susceptible-Infected-Recovered (SIR)--to take into account those factors that are key to understand epidemics in real plant populations. These ingredients are the spatial characteristics of the plots and fields in which plants are embedded and the effect of long-range dispersal of pathogens. The spatial characteristics are included through the use of random rectangular graphs which allow to consider the effects of the elongation of plots and fields, while the long-range dispersal is implemented by considering transformations, such as the Mellin and Laplace transforms, of a generalization of the adjacency matrix of the geometric graph. Our results point out that long-range dispersal favors the propagation of pathogens while the elongation of plant plots increases the epidemic threshold and decreases dramatically the number of affected plants. Interestingly, our model is able of reproducing the existence of patchy regions of infected plants and the absence of a clear propagation front centered in the initial infected plants, as it is observed in real plant epidemics.},
author = {Juddy H. Arias and Jesus G{\'o}mez-Garde{\~n}es and Sandro Meloni and Ernesto Estrada},
doi = {https://doi.org/10.1016/j.jtbi.2018.05.004},
issn = {0022-5193},
journal = {Journal of Theoretical Biology},
keywords = {Plant diseases, Spatial networks, Susceptible-Infected- Susceptible, Susceptible-Infected-Recovered},
pages = {1-13},
title = {Epidemics on plants: Modeling long-range dispersal on spatially embedded networks},
url = {https://www.sciencedirect.com/science/article/pii/S0022519318302303},
volume = {453},
year = {2018},
bdsk-url-1 = {https://www.sciencedirect.com/science/article/pii/S0022519318302303},
bdsk-url-2 = {https://doi.org/10.1016/j.jtbi.2018.05.004}
}
@article{cardillo2012,
title = {Velocity-enhanced cooperation of moving agents playing public goods games},
author = {Cardillo, Alessio and Meloni, Sandro and G\'omez-Garde\~nes, Jes\'us and Moreno, Yamir},
journal = {Physical Review E},
volume = {85},
issue = {6},
pages = {067101},
numpages = {5},
year = {2012},
publisher = {American Physical Society},
doi = {10.1103/PhysRevE.85.067101},
url = {https://link.aps.org/doi/10.1103/PhysRevE.85.067101}
}
@article{Lleberman2005,
title = {{Evolutionary dynamics on graphs}},
year = {2005},
journal = {Nature},
author = {Lleberman, Erez and Hauert, Christoph and Howak, Martin A.},
number = {7023},
pages = {312--316},
volume = {433},
doi = {10.1038/nature03204},
issn = {00280836}
}
@article{lieberman2005evolutionary,
title={Evolutionary dynamics on graphs},
author={Lieberman, Erez and Hauert, Christoph and Nowak, Martin A},
journal={Nature},
volume={433},
number={7023},
pages={312--316},
year={2005},
publisher={Nature Publishing Group}
}
@article{Stojakovic2014,
title = {{Games on graphs}},
year = {2014},
journal = {EMS Surveys in Mathematical Sciences},
author = {Allen, Benjamin and Nowak, Martin},
number = {1},
pages = {113--151},
volume = {1},
url = {http://www.ems-ph.org/doi/10.4171/EMSS/3},
isbn = {9783319083889},
doi = {10.4171/EMSS/3},
issn = {2308-2151},
keywords = {Avoider-Enforcer, Maker-Breaker, positional game, probabilistic intuition}
}
@book{grimm2005IBM,
title = {{Individual-based Modeling and Ecology}},
year = {2005},
author = {Grimm, Volker and Railsback, Steven},
publisher = {Princeton University Press},
url = {https://books.google.es/books?id=IWKYDwAAQBAJ},
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@PREAMBLE{
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Date-Modified = {2021-10-06 12:27:23 +0200},
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Bdsk-Url-1 = {https://www.sciencedirect.com/science/article/pii/S016953471100228X},
Bdsk-Url-2 = {https://doi.org/10.1016/j.tree.2011.07.011}}