forked from biolink/biolink-model
-
Notifications
You must be signed in to change notification settings - Fork 0
/
Copy pathdeprecated_predicate_mapping_config.yaml
84 lines (84 loc) · 3.98 KB
/
deprecated_predicate_mapping_config.yaml
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
# metamodel_version: 1.7.0# version: 3.1.0id: deprecated_predicate_mapping
schema_generating: true
description: A deprecated predicate mapping object contains the deprecated predicate
and an example of the rewiring that should be done to use a qualified statement
in its place.
display_name: deprecated predicate mapping
document_category: deprecated predicate mapping
weight: 20
fields:
- id: mapped_predicate
description: The predicate that is being replaced by the fully qualified representation
of predicate + subject and object qualifiers. Only to be used in test data and
mapping data to help with the transition to the fully qualified predicate model.
Not to be used in knowledge graphs.
display_name: mapped predicate
- id: subject_aspect_qualifier
display_name: subject aspect qualifier
- id: subject_direction_qualifier
display_name: subject direction qualifier
- id: subject_form_or_variant_qualifier
display_name: subject form or variant qualifier
- id: subject_part_qualifier
display_name: subject part qualifier
- id: subject_derivative_qualifier
display_name: subject derivative qualifier
- id: subject_context_qualifier
display_name: subject context qualifier
- id: predicate
description: A high-level grouping for the relationship type. AKA minimal predicate.
This is analogous to category for nodes.
display_name: predicate
- id: qualified_predicate
description: "Predicate to be used in an association when subject and object qualifiers\
\ are present and the full reading of the statement requires a qualification to\
\ the predicate in use in order to refine or increase the specificity of the\
\ full statement reading. This qualifier holds a relationship to be used instead\
\ of that expressed by the primary predicate, in a \u2018full statement\u2019\
\ reading of the association, where qualifier-based semantics are included. \
\ This is necessary only in cases where the primary predicate does not work in\
\ a full statement reading."
display_name: qualified predicate
- id: object_aspect_qualifier
display_name: object aspect qualifier
- id: object_direction_qualifier
display_name: object direction qualifier
- id: object_form_or_variant_qualifier
display_name: object form or variant qualifier
- id: object_part_qualifier
display_name: object part qualifier
- id: object_derivative_qualifier
display_name: object derivative qualifier
- id: object_context_qualifier
display_name: object context qualifier
- id: causal_mechanism_qualifier
description: A statement qualifier representing a type of molecular control mechanism
through which an effect of a chemical on a gene or gene product is mediated (e.g.
'agonism', 'inhibition', 'allosteric modulation', 'channel blocker')
display_name: causal mechanism qualifier
- id: anatomical_context_qualifier
description: A statement qualifier representing an anatomical location where an
relationship expressed in an association took place (can be a tissue, cell type,
or subcellular location).
display_name: anatomical context qualifier
- id: species_context_qualifier
description: A statement qualifier representing a taxonomic category of species
in which a relationship expressed in an association took place.
display_name: species context qualifier
- id: exact_match
description: holds between two entities that have strictly equivalent meanings,
with a high degree of confidence
display_name: exact match
cardinality: multi
- id: narrow_match
description: a list of terms from different schemas or terminology systems that
have a narrower, more specific meaning. Narrower terms are typically shown as
children in a hierarchy or tree.
display_name: narrow match
cardinality: multi
- id: broad_match
description: a list of terms from different schemas or terminology systems that
have a broader, more general meaning. Broader terms are typically shown as parents
in a hierarchy or tree.
display_name: broad match
cardinality: multi