| title | description | published | date | tags |
|---|---|---|---|---|
Xfam |
List of the Fam databases |
true |
2020-04-15 19:44:18 UTC |
List of all the Fam database that exist: Pfam, Rfam, Dfam, Treefam, and Antifam. {.is-info}
- Xfam Main Page {.links-list}
The Pfam database is a large collection of protein families, each represented by multiple sequence alignments and hidden Markov models (HMMs).
- Pfam Main Page {.links-list}
The Rfam database is a collection of RNA families, each represented by multiple sequence alignments, consensus secondary structures and covariance models (CMs).
- Rfam Main Page {.links-list}
The Dfam database is a collection of DNA tranposable element families, each represented by multiple sequence alignments, consensus sequences, and hidden Markov models. The Dfam database is hosted by the Institute for Systems Biology, Seattle, US.
- dfam Main Page {.links-list}
Treefam is a database composed of phylogenetic trees inferred from animal genomes. It provides orthology/parology predictions as well the evolutionary history of genes.
- Treefam Main Page {.links-list}
AntiFam is a collection of hidden Markov models (HMMs) designed to identify spurious open reading frames (ORFs).
- Antifam Main Page {.links-list}
- S. El-Gebali, et al., The Pfam protein families database in 2019: Nucleic Acids Research (2019) doi: 10.1093/nar/gky995
- Ioanna Kalvari, et al., Rfam 13.0: shifting to a genome-centric resource for non-coding RNA families. Nucleic Acids Research (2017) 10.1093/nar/gkx1038
- Ioanna Kalvari, et al., Non-coding RNA analysis using the Rfam database. Current Protocols in Bioinformatics (2018) 10.1002/cpbi.51
- Robert D. Finn; Jet al.; The Dfam database of repetitive DNA families. Robert Hubley; Nucleic Acids Research (2016) Database Issue 44:D81-89. doi: 10.1093/nar/gkv1272
- Jue Ruan, Heng Li, et al. TreeFam: 2008 Update. Nucleic Acids Research (2008) doi: 10.1093/nar/gkm1005
- Eberhardt, R. Y., Haft, D. H., Punta, M., Martin, M., O'Donovan, C., & Bateman, A. (2012). AntiFam: a tool to help identify spurious ORFs in protein annotation. Database, 2012. {.grid-list}