diff --git a/.github/workflows/main.yml b/.github/workflows/main.yml
index abe27298..fccf25a7 100644
--- a/.github/workflows/main.yml
+++ b/.github/workflows/main.yml
@@ -27,7 +27,7 @@ jobs:
         pip install flake8 pytest pycodestyle pydocstyle
         pycodestyle --ignore E203,W503 --exclude=tests alignn
         pydocstyle --match-dir=core --match-dir=io --match-dir=io --match-dir=ai --match-dir=analysis --match-dir=db --match-dir=tasks --count alignn
-        flake8 --ignore E203,W503 --exclude=tests --statistics --count --exit-zero alignn
+        flake8 --ignore E203,W503 --exclude=tests,scripts --statistics --count --exit-zero alignn
     - name: Test with pytest
       run: |
         export DGLBACKEND=pytorch