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<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01//EN"
"http://www.w3.org/TR/html4/strict.dtd">
<HTML>
<HEAD>
<TITLE>DART Documentation Index</TITLE>
<link rel="stylesheet" type="text/css" href="html/doc.css" />
<link href="images/dart.ico" rel="shortcut icon" />
</HEAD>
<BODY>
<A NAME="TOP"></A>
<H1>DART Documentation Main Index</H1>
<table border=0 summary="" cellpadding=5>
<tr>
<td valign=middle>
<img src="images/Dartboard7.png" alt="DART project logo" height=70 />
</td>
<td>
<P><!-- already here: Jump to <a href="index.html">DART Documentation Main Index</a --><br />
<small><small>version information for this file: <br />
<!-- version tag follows, do not edit -->
$Id$</small></small>
</P></td>
</tr>
</table>
<A HREF="#Updates">Updates</A> /
<A HREF="#Programs">Programs</A> /
<A HREF="#Models">Models</A> /
<A HREF="#Namelists">Namelist</A> /
<A HREF="#Modules">Modules</A> /
<A HREF="#Directories">Directory Tree</A> /
<A HREF="#OtherDocs">Other Documentation</A> /
<A HREF="#KitchenSink">All Documents</A> /
<A HREF="#Legalese">Terms of Use</A>
<center>
<a href=html/Manhattan_release.html>
<H2>Click here for Manhattan release notes</H2>
</a>
</center>
<H2>Overview</H2>
<P>
The Data Assimilation Research Testbed (DART) is a public-domain,
community facility for doing research on and applying ensemble
data assimilation techniques over a variety of models and observation types.
It includes many example models and support for
common observation types and for different filter types.
It also includes material for teaching and learning the basic
principles of data assimilation.
</P><P>
DART strives to implement general solutions
which work over a range of models and observation types,
and to develop theory-based algorithms that solve the many
real problems encountered when doing ensemble data assimilation.
The algorithms in DART are tested on both simple one-dimensional
models (e.g. the Lorenz series of models) as well as full-up
3D NWP (Numerical Weather Prediction) models and GCMs (Global Climate Models).
The basic Kalman filter code can be written in a few lines.
In practice, however, there are a variety of difficulties
resulting from sampling error, model bias, observation error,
lack of model divergence, variations in observation density in
space and time, etc.
There are tools built into the DART framework to address
many of these problems.
</P>
<P>
This release of DART includes many new features.
DART will now read directly from NetCDF files. If your
model uses NetCDF file format the model_to_dart and
dart_to_model steps are no longer needed. Given that
many jobs spend a large percentage of time doing
file I/O, this can be a significant speedup in the overall
assimilation cycle. DART now distributes the ensemble
of model states across the MPI tasks, removing the hard
memory limit that a single ensemble member's data
fit into the memory of a single task. This removes the
memory limit for models at high resolution or with nested
grids. DART can assimilate forward operators computed
outside of the filter process. Users can provide a table of
observations and state vector items along with a factor
that can easily prevent one class of observations from
impacting another class of state vector data, and vice versa.
The DART directory structure has been revamped to help
users more easily find the various utilities, tools, supported models,
and observation types that come with the DART distribution.
The Matlab diagnostic routines have been rewritten to no
longer require the external MEXNC toolbox. They now use
the intrinsic Matlab NetCDF functions.
</P>
<P>
To get started, look here:
</P>
<ul>
<li>Our extensive <a href="http://www.image.ucar.edu/DAReS/">web pages</a></li>
<li>The <a href="html/Manhattan_release.html">release notes</a> which include
installation hints, a walk-through of building and running a model, and an
overview of the diagnostics.</li>
<li>Documentation for the
main assimilation program <a href="../assimilation_code/programs/filter/filter.html">filter</a></li>
<li>Documentation for the other related
<a href="#Programs">programs</a> that come with DART</li>
<li>Documentation for <a href="../observations/obs_converters/observations.html">observation
types</a> supported by DART</li>
<li>Documentation for the Matlab <a href="#Diagnostics">diagnostic tools</a></li>
<li>Discussion of <a href="../assimilation_code/modules/assimilation/assim_tools_mod.html">localization</a>,
<a href="../assimilation_code/programs/filter/filter.html#Inflation">inflation</a></li>
<li>The web pages specific to <a href="#Models">each model</a></li>
<li>The web pages specific to <a href="#Observations">each observation type</a></li>
</ul>
<P>
The best way to get to know the DART software is to follow along while
reading the tutorial documents in the <a href="DART_LAB/DART_LAB.html">DART_LAB</a>
and then the <a href="tutorial/index.html">DART/tutorial</a> directory.
</P>
<P>
The latest official release is named "Manhattan".
See the extensive release notes
<a href="html/Manhattan_release.html">Manhattan_release</a>
which include installation help, a walk-through of building and
running a model, and then examples of how to use the diagnostics
to evaluate the success of the assimilation.
See <a href="html/Manhattan_diffs_from_Lanai.html">Manhattan_diffs_from_Lanai</a>
for a brief summary of changes since Lanai, including new functionality,
new models and tools, and any non-backwards-compatible changes
since the Lanai release.
</P>
<P>
Future releases of DART are expected to have substantial changes
and will be less backwards compatible than has been historically
true with DART releases.
New development will continue on a separate subversion branch.
</P>
<P>
Every source file in the DART system has a corresponding .html file that
contains specifics for public interfaces in each of the DART modules,
for the executable programs which come with DART, and for
how to interface new models into the DART system.
</P>
<P>
The remainder of this page
contains links to all the documentation for this DART release.
</P>
<P><!-- make sure the 'top' is aligned correctly --></P>
<!--==================================================================-->
<A NAME="Updates"></A>
<div class="top">[<a href="#">top</a>]</div><hr />
<H2>Software Updates</H2>
<P>
Updates to the release are now summarized in a file
at the top level called <a href="../CHANGELOG">CHANGELOG</a>.
The latest updates are at the end of this file.
</P>
<P><!-- make sure the 'top' is aligned correctly --></P>
<!--==================================================================-->
<A NAME="UserDocs"></A>
<div class="top">[<a href="#">top</a>]</div><hr />
<H2>User Documentation and Tutorials</H2>
<P>
Start <A HREF="http://www.image.ucar.edu/DAReS/">here</A>
if you are looking for DART User-level HTML documentation.
DART comes with an extensive set of documentation
including release notes for each version, a walk-through on-line
tutorial, and a full set of pdf and framemaker tutorial materials.
</P>
<P>The Manhattan <a href="html/Manhattan_release.html">release notes</a> include
installation hints, a walk-through of building and running a model,
and an overview of the diagnostics.
It also includes a list of new or changed models, observation support,
diagnostics, and non-backwards compatible changes.
</P>
<P>
For a shorter summary document of only the changes since the last release
see <a href="html/Manhattan_diffs_from_Lanai.html">Manhattan_diffs_from_Lanai</a>.
This may be more helpful for current DART users who are
looking for pointers to differences when they update.
</P>
<P>
Three tutorials, in PDF format, are available. The first
is more introductory and interactive with
<A HREF="DART_LAB/DART_LAB.html">PDF documents and Hands-On
Matlab exercises</A>.
The <a href="tutorial/index.html">full-fledged DART Tutorial</a> is more
of a workshop format, with multiple sections covering various parts of
DART with suggested exercises at the end of most sections.
</P>
<P>
All sections below this one are detailed information on
the programming interfaces of all the DART modules, the
namelist details, the executable programs which are
part of DART. For introductory materials, see the links above.
<P>
<P><!-- make sure the 'top' is aligned correctly --></P>
<!--==================================================================-->
<A NAME="Programs"></A>
<div class="top">[<a href="#">top</a>]</div><hr />
<H2>Programs</H2>
<P>
DART contains many library functions and separate executable programs.
The main DART executable is the <em class=file>filter</em> program. Other programs
generate data or format the diagnostic information.
</P>
<P>
The executable programs that come with DART include:
</P>
<UL style="list-style: none;">
<LI><A href="../assimilation_code/programs/filter/filter.html">filter</A> - the main assimilation code</LI>
<LI><A href="../assimilation_code/programs/perfect_model_obs/perfect_model_obs.html">perfect_model_obs</A> - run a model to generate synthetic observation values</LI>
<LI><A href="../assimilation_code/programs/create_obs_sequence/create_obs_sequence.html">create_obs_sequence</A> - interactive program to generate observations</LI>
<LI><A href="../assimilation_code/programs/create_fixed_network_seq/create_fixed_network_seq.html">create_fixed_network_seq</A> - repeat a set of observations at multiple times</LI>
<LI><A href="../assimilation_code/programs/obs_sequence_tool/obs_sequence_tool.html">obs_sequence_tool</A> - general observation sequence file manipulation tool</LI>
<LI><A href="../assimilation_code/programs/fill_inflation_restart/fill_inflation_restart.html">fill_inflation_restart.html</A> - [deprecated] - initialize inflation files</LI>
<LI><A href="../assimilation_code/programs/advance_time/advance_time.html">advance_time</A> - increment calendar times, useful for scripting loops</LI>
<LI><A href="../assimilation_code/programs/closest_member_tool/closest_member_tool.html">closest_member_tool</A> - select DART restart file closest to mean</LI>
<LI><A href="../assimilation_code/programs/integrate_model/integrate_model.html">integrate_model</A> - wrapper for models called as subroutines</LI>
<LI><A href="../assimilation_code/programs/preprocess/preprocess.html">preprocess</A> - used during compiling</LI>
<LI><A href="../build_templates/mkmf.html">mkmf</A> - used to generate makefiles during compiling</LI>
<LI><A href="../assimilation_code/programs/wakeup_filter/wakeup_filter.html">wakeup_filter</A> - used when filter runs a parallel model advance</LI>
<LI><A href="../assimilation_code/programs/system_simulation/system_simulation.html">system_simulation</A> (sampling error correction) - generate the files used for Sampling Error Correction option</LI>
</UL>
<A NAME="Diagnostics"></A>
<P>
The diagnostic programs that process observations after being assimilated
by DART include:
</P>
<UL style="list-style: none;">
<LI><A href="../assimilation_code/programs/obs_diag/oned/obs_diag.html">oned/obs_diag</A> - low order model diagnostics</LI>
<LI><A href="../assimilation_code/programs/obs_diag/threed_sphere/obs_diag.html">threed_sphere/obs_diag</A> - full 3d model diagnostics</LI>
<LI><A href="../assimilation_code/programs/obs_seq_to_netcdf/obs_seq_to_netcdf.html">obs_seq_to_netcdf</A> - convert output obs sequence files into netcdf format</LI>
<LI><A href="../assimilation_code/programs/obs_common_subset/obs_common_subset.html">obs_common_subset</A> - select a common subset of obs from multiple files</LI>
<LI><A href="../assimilation_code/programs/obs_selection/obs_selection.html">obs_selection</A> - select a given set of obs from a longer sequence</LI>
<LI><A href="../assimilation_code/programs/obs_seq_coverage/obs_seq_coverage.html">obs_seq_coverage</A> - select a consistent set of obs through time</LI>
<LI><A href="../assimilation_code/programs/obs_seq_verify/obs_seq_verify.html">obs_seq_verify</A> - convert obs to a netcdf file formatted for forecast verification</LI>
<!--<LI><A href="../diagnostics/rms_diag.f90">rms_diag</A> - example code to compute diagnostic values</LI>-->
<LI><A href="../assimilation_code/programs/compare_states/compare_states.html">compare_states</A> - compare fields within multiple restart files</LI>
<LI><A href="../assimilation_code/programs/model_mod_check/model_mod_check.html">model_mod_check</A> - development and testing tool during interface development</LI>
<LI><A href="../developer_tests/utilities/PrecisionCheck.html">PrecisionCheck</A> - compiler/platform check of Fortran real/integer precision</LI>
</UL>
<A NAME="Observations"></A>
<P>
The executable programs that convert observations into DART format include:
</P>
<UL style="list-style: none;">
<LI><A href="../observations/obs_converters/observations.html">Observation Conversion Introduction</A></LI>
<LI> </LI>
<LI><A href="../observations/obs_converters/AIRS/AIRS.html">AIRS data</A></LI>
<LI><A href="../observations/obs_converters/AURA/convert_aura.f90">AURA temperature data</A> (source)</LI>
<LI><A href="../observations/obs_converters/AVISO/AVISO.html">Aviso+/CMEMS along-track sea level anomalies</A></LI>
<LI><A href="../observations/obs_converters/Ameriflux/level4_to_obs.html">Ameriflux tower data</A></LI>
<LI><A href="../observations/obs_converters/cice/cice_to_obs.html">CICE data</A></LI>
<LI><A href="../observations/obs_converters/CHAMP/CHAMP_density_text_to_obs.f90">CHAMP data</A> (source)</LI>
<LI><A href="../observations/obs_converters/CNOFS/CNOFS_text_to_obs.f90">CNOFS data</A> (source)</LI>
<LI><A href="../observations/obs_converters/COSMOS/COSMOS_development.html">COSMOS groundwater data</A> (development format)</LI>
<LI><A href="../observations/obs_converters/COSMOS/COSMOS_to_obs.html">COSMOS groundwater data</A></LI>
<LI><A href="../observations/obs_converters/DWL/dwl_to_obs.html">DWL doppler wind lidar data</A></LI>
<LI><A href="../observations/obs_converters/even_sphere/even_sphere.m">Even Sphere data</A> (source)</LI>
<LI><A href="../observations/obs_converters/text_GITM/text_to_obs.f90">GITM data</A> (source)</LI>
<LI><A href="../observations/obs_converters/gps/gps.html">GPS Radio Occultation data</A></LI>
<LI><A href="../observations/obs_converters/gnd_gps_vtec/gnd_gps_vtec_text_to_obs.f90">Ground GPS Vtec data</A> (source)</LI>
<LI><A href="../observations/obs_converters/GSI2DART/gsi_to_dart.f90">GSI data</A> (source)</LI>
<LI><A href="../observations/obs_converters/GTSPP/GTSPP.html">GTSPP data</A></LI>
<LI><A href="../observations/obs_converters/MADIS/MADIS.html">MADIS data</A></LI>
<LI><A href="../observations/obs_converters/MIDAS/MIDAS_to_obs.html">MIDAS TEC data</A> (netcdf intermediate files)</LI>
<LI><A href="../observations/obs_converters/snow/snow_to_obs.html">MODIS Snow data</A> (source)</LI>
<LI><A href="../observations/obs_converters/MODIS/MODIS_README.html">MODIS data</A> (ORNL DAAC)</LI>
<LI><A href="../observations/obs_converters/NCEP/prep_bufr/prep_bufr.html">NCEP prepbufr to source</A></LI>
<LI><A href="../observations/obs_converters/NCEP/ascii_to_obs/create_real_obs.html">NCEP ascii to obs_seq</A></LI>
<LI><A href="../observations/obs_converters/ok_mesonet/ok_mesonet.html">Oklahoma Mesonet MDF data</A></LI>
<LI><A href="../observations/obs_converters/quikscat/QuikSCAT.html">QuikSCAT data</A></LI>
<LI><A href="../observations/obs_converters/ROMS/convert_roms_obs.f90">ROMS data</A> (source)</LI>
<LI><A href="../observations/obs_converters/radar/radar.html">Radar data</A></LI>
<LI><A href="../observations/obs_converters/SABER/convert_saber_cdf.f90">SABER data</A> (source)</LI>
<LI><A href="../observations/obs_converters/SSEC/SSEC.html">SSEC data</A></LI>
<LI><A href="../observations/obs_converters/SSUSI/convert_f16_edr_dsk.html">SSUSI data</A></LI>
<LI><A href="../observations/obs_converters/text/text_to_obs.html">source/text data</A></LI>
<LI><A href="../observations/obs_converters/tropical_cyclone/tc_to_obs.html">Tropical Cyclone ATCF reports</A> (source)</LI>
<LI><A href="../observations/obs_converters/tpw/tpw.html">Total Precipitable Water obs</A> (source)</LI>
<LI><A href="../observations/obs_converters/var/littler_tf_dart.html">little-r data</A></LI>
<LI><A href="../observations/obs_converters/var/rad_3dvar_to_dart.html">3DVAR radar data</A></LI>
<LI><A href="../observations/obs_converters/var/var.html">var obs data</A></LI>
<LI><A href="../observations/obs_converters/WOD/WOD.html">World Ocean Database data</A></LI>
</UL>
<!--
<A NAME="Model_specific_programs"></A>
<P>
Executable programs specific to a single model. Many are converters
from model file format to DART state vector, and back.
</P>
<UL style="list-style: none;">
<LI>MITgcm_ocean <A href="../models/MITgcm_ocean/create_ocean_obs.html">create_ocean_obs</A></LI>
<LI>MITgcm_ocean <A href="../models/MITgcm_ocean/trans_pv_sv.html">trans_pv_sv</A></LI>
<LI>MITgcm_ocean <A href="../models/MITgcm_ocean/trans_sv_pv.html">trans_sv_pv</A></LI>
<LI>NCOMMAS <A href="../models/NCOMMAS/dart_to_ncommas.html">dart_to_ncommas</A></LI>
<LI>NCOMMAS <A href="../models/NCOMMAS/ncommas_to_dart.html">ncommas_to_dart</A></LI>
<LI>noah <A href="../models/noah/dart_to_noah.html">dart_to_noah</A></LI>
<LI>noah <A href="../models/noah/noah_to_dart.html">noah_to_dart</A></LI>
<LI>wrf <A href="../models/wrf/shell_scripts/advance_model.html">advance_model</A></LI>
<LI>wrf <A href="../models/wrf/WRF_DART_utilities/replace_wrf_fields.html">replace_wrf_fields</A></LI>
<LI>wrf <A href="../models/wrf/WRF_DART_utilities/wrf_dart_obs_preprocess.html">wrf_dart_obs_preprocess</A> - preprocess observations intended to be assimilated into WRF. Program has understanding of the WRF domain information.</LI>
</UL>
-->
<P><!-- make sure the 'top' is aligned correctly --></P>
<!--==================================================================-->
<A NAME="Models"></A>
<div class="top">[<a href="#">top</a>]</div><hr />
<H2>Models</H2>
<P>
DART comes with several models which can be used
to learn about data assimilation, to do actual
experiments with real observations, or to use as
a template for adding additional models to DART.
</P>
<P>
All models in the DART project have individual documentation
pages, which can be found here (if an html document is not
available, the link is to the .f90 source):
</P>
<P>
Currently Manhattan has support for many of our larger models
such as WRF, POP, CAM, CICE, CLM, ROMS, MPAS_ATM, ... and
all lower models such as lorenz_96. Models previously available
on Lanai can still be used with DART <A HREF="https://svn-dares-dart.cgd.ucar.edu/DART/releases/classic/">classic</A>.
</P>
<UL style="list-style: none;">
<b>Supported in Manhattan</b>
<UL>
<LI><A HREF="../models/9var/model_mod.html">9var</A> (html)</LI>
<LI><A HREF="../models/bgrid_solo/model_mod.html">bgrid_solo</A> (html)</LI>
<LI><A HREF="../models/cam-fv/model_mod.html">CAM-FV</A> (html)</LI>
<LI><A HREF="../models/cice/model_mod.f90">cice</A> (source)</LI>
<LI><A HREF="../models/clm/model_mod.html">CLM</A> (html)</LI>
<LI><A HREF="../models/forced_lorenz_96/model_mod.html">forced_lorenz_96</A> (html)</LI>
<LI><A HREF="../models/lorenz_04/model_mod.html">Lorenz_04</A> (html)</LI>
<LI><A HREF="../models/lorenz_63/model_mod.html">Lorenz_63</A> (html)</LI>
<LI><A HREF="../models/lorenz_84/model_mod.html">Lorenz_84</A> (html)</LI>
<LI><A HREF="../models/lorenz_96/model_mod.html">Lorenz_96</A> (html)</LI>
<LI><A HREF="../models/lorenz_96_2scale/model_mod.f90">Lorenz_96_2scale</A> (source)</LI>
<LI><A HREF="../models/mpas_atm/model_mod.html">MPAS_atm</A> (html)</LI>
<LI><A HREF="../models/null_model/model_mod.html">null_model</A> (html)</LI>
<LI><A HREF="../models/POP/model_mod.html">POP</A> (html)</LI>
<LI><A HREF="../models/ROMS/model_mod.html">ROMS</A> (html)</LI>
<LI><A HREF="../models/simple_advection/model_mod.html">simple_advection</A> (html)</LI>
<LI><A HREF="../models/template/model_mod.html">template</A></LI>
<LI><A HREF="../models/wrf/model_mod.html">WRF</A> (html)</LI>
</UL></br>
<b>Supported in Classic</b>
<UL>
<LI><A HREF="../models/am2/model_mod.f90">AM2</A> (source)</LI>
<!-- LI><A HREF="../models/CESM/model_mod.f90">CESM</A> (source)</LI -->
<LI><A HREF="../models/coamps/model_mod.html">COAMPS</A> (html)</LI>
<LI><A HREF="../models/coamps_nest/model_mod.f90">COAMPS_nest</A> (source)</LI>
<LI><A HREF="../models/dynamo/model_mod.f90">dynamo</A> (source)</LI>
<LI><A HREF="../models/forced_barot/model_mod.f90">forced_barot</A> (source)</LI>
<LI><A HREF="../models/gitm/model_mod.html">GITM</A> (html)</LI>
<LI><A HREF="../models/ikeda/model_mod.html">ikeda</A> (html)</LI>
<LI><A HREF="../models/MITgcm_annulus/model_mod.f90">MITgcm_annulus</A> (source)</LI>
<LI><A HREF="../models/MITgcm_ocean/model_mod.html">MITgcm_ocean</A> (html)</LI>
<LI><A HREF="../models/mpas_ocn/model_mod.html">MPAS_ocn</A> (html)</LI>
<LI><A HREF="../models/NAAPS/model_mod.f90">NAAPS</A> (source)</LI>
<LI><A HREF="../models/NCOMMAS/model_mod.html">NCOMMAS</A> (html)</LI>
<LI><A HREF="../models/noah/model_mod.html">NOAH</A> (html)</LI>
<LI><A HREF="../models/pe2lyr/model_mod.html">pe2lyr</A> (html)</LI>
<LI><A HREF="../models/rose/model_mod.f90">Rose</A> (source)</LI>
<LI><A HREF="../models/sqg/model_mod.html">SQG</A> (html)</LI>
<LI><A HREF="../models/tiegcm/model_mod.f90">TIEgcm</A> (source)</LI>
</UL>
</UL>
<P><!-- make sure the 'top' is aligned correctly --></P>
<!--==================================================================-->
<A NAME="Namelists"></A>
<div class="top">[<a href="#">top</a>]</div><hr />
<H2>Namelists</H2>
<P>
Generally read from the file <em class=file>input.nml</em>.
We adhere to the F90 standard of starting a namelist with an ampersand
'&' and terminating with a slash '/'.
<P>Namelists for Programs:</P>
<UL style="list-style: none;">
<LI><A HREF="../assimilation_code/programs/closest_member_tool/closest_member_tool.html#Namelist">&closest_member_tool_nml</A></LI>
<LI><A HREF="../assimilation_code/programs/compare_states/compare_states.html#Namelist">&compare_states_nml</A></LI>
<LI><A HREF="../assimilation_code/programs/filter/filter.html#Namelist">&filter_nml</A></LI>
<LI><A HREF="../assimilation_code/programs/system_simulation/system_simulation.html#Namelist">&full_error_nml</A> (system simulation)</LI>
<LI><A HREF="../assimilation_code/programs/model_mod_check/model_mod_check.html#Namelist">&model_mod_check_nml</A></LI>
<LI><A HREF="../assimilation_code/programs/obs_common_subset/obs_common_subset.html#Namelist">&obs_common_subset_nml</A></LI>
<LI><A HREF="../assimilation_code/programs/obs_diag/oned/obs_diag.html#Namelist">&obs_diag_nml</A> (oned)</LI>
<LI><A HREF="../assimilation_code/programs/obs_diag/threed_sphere/obs_diag.html#Namelist">&obs_diag_nml</A> (threed_sphere)</LI>
<LI><A HREF="../assimilation_code/programs/obs_loop/obs_loop.nml">&obs_loop_nml</A></LI>
<LI><A HREF="../assimilation_code/programs/obs_selection/obs_selection.html#Namelist">&obs_selection_nml</A></LI>
<LI><A HREF="../assimilation_code/programs/obs_seq_coverage/obs_seq_coverage.html#Namelist">&obs_seq_coverage_nml</A></LI>
<LI><A HREF="../assimilation_code/programs/obs_seq_to_netcdf/obs_seq_to_netcdf.html#Namelist">&obs_seq_to_netcdf_nml</A></LI>
<LI><A HREF="../assimilation_code/programs/obs_seq_verify/obs_seq_verify.html#Namelist">&obs_seq_verify_nml</A></LI>
<LI><A HREF="../assimilation_code/programs/obs_sequence_tool/obs_sequence_tool.html#Namelist">&obs_sequence_tool_nml</A></LI>
<LI><A HREF="../assimilation_code/programs/perfect_model_obs/perfect_model_obs.html#Namelist">&perfect_model_obs_nml</A></LI>
<LI><A HREF="../assimilation_code/programs/preprocess/preprocess.html#Namelist">&preprocess_nml</A></LI>
</UL>
<P>Namelists for Observation Conversion Programs:</P>
<UL style="list-style: none;">
<LI><A HREF="../observations/obs_converters/AIRS/AIRS.html#Namelist">&convert_airs_L2_nml</A></LI>
<LI><A HREF="../observations/obs_converters/quikscat/QuikSCAT.html#Namelist">&convert_L2b_nml</A></LI>
<LI><A HREF="../observations/obs_converters/tpw/tpw.html#Namelist">&convert_tpw_nml</A></LI>
<LI><A HREF="../observations/obs_converters/COSMOS/COSMOS_development.html#Namelist">&COSMOS_development_nml</A></LI>
<LI><A HREF="../observations/obs_converters/COSMOS/COSMOS_to_obs.html#Namelist">&COSMOS_to_obs_nml</A></LI>
<LI><A href="../observations/obs_converters/gps/gps.html#Namelist">&convert_cosmic_gps_nml</A></LI>
<LI><A HREF="../observations/obs_converters/Ameriflux/level4_to_obs.html#Namelist">&level4_to_obs_nml</A></LI>
<LI><A HREF="../observations/obs_converters/MIDAS/MIDAS_to_obs.html#Namelist">&MIDAS_to_obs_nml</A></LI>
<LI><A href="../observations/obs_converters/MODIS/MOD15A2_to_obs.html#Namelist">&MOD15A2_to_obs_nml</A></LI>
<LI><A HREF="../observations/obs_converters/NCEP/ascii_to_obs/create_real_obs.html#Namelist">&ncepobs_nml</A></LI>
<LI><A href="../observations/obs_converters/tropical_cyclone/tc_to_obs.html#Namelist">&tc_to_obs_nml</A></LI>
<LI><A HREF="../observations/obs_converters/var/rad_3dvar_to_dart.html#Namelist">&rad_3dvar_to_dart_nml</A></LI>
<LI><A HREF="../observations/obs_converters/WOD/WOD.html#Namelist">&wod_to_obs_nml</A></LI>
</UL>
<P>Namelists for Modules:</P>
<UL style="list-style: none;">
<LI><A HREF="../assimilation_code/modules/assimilation/assim_model_mod.html#Namelist">&assim_model_mod_nml</A></LI>
<LI><A HREF="../assimilation_code/modules/assimilation/assim_tools_mod.html#Namelist">&assim_tools_mod_nml</A></LI>
<LI><A HREF="../assimilation_code/modules/assimilation/cov_cutoff_mod.html#Namelist">&cov_cutoff_mod_nml</A></LI>
<LI><A HREF="../assimilation_code/modules/utilities/ensemble_manager_mod.html#Namelist">&ensemble_manager_mod_nml</A></LI>
<LI><A HREF="../assimilation_code/location/channel/location_mod.html#Namelist">&location_mod_nml</A> (channel)</LI>
<LI><A HREF="../assimilation_code/location/column/location_mod.nml">&location_mod_nml</A> (column)</LI>
<LI><A HREF="../assimilation_code/location/threed_cartesian/location_mod.html#Namelist">&location_mod_nml</A> (threed_cartesian)</LI>
<LI><A HREF="../assimilation_code/location/threed_sphere/location_mod.html#Namelist">&location_mod_nml</A> (threed_sphere)</LI>
<LI><A HREF="../assimilation_code/modules/utilities/mpi_utilities_mod.html#Namelist">&mpi_utilities_mod_nml</A></LI>
<LI><A HREF="../observations/forward_operators/obs_def_gps_mod.html#Namelist">&obs_def_gps_mod_nml</A></LI>
<LI><A HREF="../observations/forward_operators/obs_def_ocean_mod.nml">&obs_def_ocean_mod_nml</A></LI>
<LI><A HREF="../observations/forward_operators/obs_def_radar_mod.html#Namelist">&obs_def_radar_mod_nml</A></LI>
<LI><A HREF="../observations/forward_operators/obs_def_tower_mod.nml">&obs_def_tower_mod_nml</A></LI>
<LI><A HREF="../observations/forward_operators/obs_def_tpw_mod.nml">&obs_def_tpw_mod_nml</A></LI>
<LI><A HREF="../assimilation_code/modules/observations/obs_kind_mod.html#Namelist">&obs_kind_mod_nml</A></LI>
<LI><A HREF="../assimilation_code/modules/observations/obs_sequence_mod.html#Namelist">&obs_sequence_mod_nml</A></LI>
<LI><A HREF="../assimilation_code/modules/assimilation/reg_factor_mod.html#Namelist">&reg_factor_mod_nml</A></LI>
<LI><A HREF="../assimilation_code/modules/assimilation/smoother_mod.html#Namelist">&smoother_mod_nml</A></LI>
<LI><A HREF="../assimilation_code/modules/utilities/schedule_mod.html#Namelist">&schedule_mod_nml</A></LI>
<LI><A HREF="../assimilation_code/modules/utilities/utilities_mod.html#Namelist">&utilities_mod_nml</A></LI>
</UL>
<P>Namelists for Models:</P>
<UL style="list-style: none;">
<LI>9var <A HREF="../models/9var/model_mod.html#Namelist">&model_nml</A></LI>
<LI>bgrid_solo <A HREF="../models/bgrid_solo/model_mod.html#Namelist">&model_nml</A></LI>
<LI>cam <A HREF="../models/cam-fv/model_mod.html#Namelist">&model_nml</A></LI>
<!-- <LI>CESM <A HREF="../models/CESM/model_mod.nml">&model_nml</A></LI> -->
<LI>clm <A HREF="../models/clm/model_mod.html#Namelist">&model_nml</A></LI>
<LI>coamps <A HREF="../models/coamps/model_mod.html#Namelist">&model_nml</A></LI>
<LI>coamps_nest <A HREF="../models/coamps_nest/model_mod.html#Namelist">&model_nml</A></LI>
<LI>forced_lorenz_96 <A HREF="../models/forced_lorenz_96/model_mod.html#Namelist">&model_nml</A></LI>
<LI>ikeda <A HREF="../models/ikeda/model_mod.html#Namelist">&model_nml</A></LI>
<LI>lorenz_04 <A HREF="../models/lorenz_04/model_mod.html#Namelist">&model_nml</A></LI>
<LI>lorenz_63 <A HREF="../models/lorenz_63/model_mod.html#Namelist">&model_nml</A></LI>
<LI>lorenz_84 <A HREF="../models/lorenz_84/model_mod.html#Namelist">&model_nml</A></LI>
<LI>lorenz_96 <A HREF="../models/lorenz_96/model_mod.html#Namelist">&model_nml</A></LI>
<LI>lorenz_96_2scale <A HREF="../models/lorenz_96_2scale/model_mod.html#Namelist">&model_nml</A></LI>
<!-- <LI>MITgcm_annulus <A HREF="../models/MITgcm_annulus/model_mod.nml">&model_nml</A></LI> -->
<LI>MITgcm_ocean <A HREF="../models/MITgcm_ocean/create_ocean_obs.html#Namelist">&create_ocean_obs_nml</A></LI>
<LI>MITgcm_ocean <A HREF="../models/MITgcm_ocean/model_mod.html#Namelist">&model_nml</A></LI>
<LI>mpas_atm <A HREF="../models/mpas_atm/model_mod.html#Namelist">&model_nml</A></LI>
<LI>mpas_ocn <A HREF="../models/mpas_ocn/model_mod.html#Namelist">&model_nml</A></LI>
<LI>NAAPS <A HREF="../models/NAAPS/model_mod.nml">&model_nml</A></LI>
<LI>NAAPS <A HREF="../models/NAAPS/model_mod_check.nml">&model_mod_check_nml</A></LI>
<LI>NCOMMAS <A HREF="../models/NCOMMAS/model_mod.html#Namelist">&model_nml</A></LI>
<LI>NCOMMAS <A HREF="../models/NCOMMAS/model_mod.html#Namelist">&ncommas_vars_nml</A></LI>
<LI>noah <A HREF="../models/noah/model_mod.html#Namelist">&model_nml</A></LI>
<LI>null_model <A HREF="../models/null_model/model_mod.html#Namelist">&model_nml</A></LI>
<LI>POP <A HREF="../models/POP/model_mod.html#Namelist">&model_nml</A></LI>
<LI>ROMS <A HREF="../models/ROMS/model_mod.html#Namelist">&model_nml</A></LI>
<LI>simple_advection <A HREF="../models/simple_advection/model_mod.html#Namelist">&model_nml</A></LI>
<LI>sqg <A HREF="../models/sqg/model_mod.html#Namelist">&model_nml</A></LI>
<LI>template <A HREF="../models/template/model_mod.html#Namelist">&model_nml</A></LI>
<LI>wrf <A HREF="../models/wrf/model_mod.html#Namelist">&model_nml</A></LI>
<LI>wrf <A HREF="../models/wrf/WRF_DART_utilities/replace_wrf_fields.html#Namelist">&replace_wrf_fields_nml</A></LI>
<LI>wrf <A HREF="../models/wrf/WRF_DART_utilities/wrf_dart_obs_preprocess.html#Namelist">&wrf_dart_obs_preprocess_nml</A></LI>
</UL>
<P><!-- make sure the 'top' is aligned correctly --></P>
<!--==================================================================-->
<A NAME="Modules"></A>
<div class="top">[<a href="#">top</a>]</div><hr />
<H2>Modules</H2>
<P>
All modules in the DART project have individual documentation
pages, which can be found here:
</P>
Assimilation Modules
<UL>
<LI><A href="../assimilation_code/modules/assimilation/adaptive_inflate_mod.html"> assimilation_code/modules/assimilation/adaptive_inflate_mod</A></LI>
<LI><A href="../assimilation_code/modules/assimilation/assim_tools_mod.html"> assimilation_code/modules/assimilation/assim_tools_mod</A></LI>
<LI><A href="../assimilation_code/modules/assimilation/assim_model_mod.html"> assimilation_code/modules/assimilation/assim_model_mod</A></LI>
<LI><A href="../assimilation_code/modules/assimilation/assim_tools_mod.html"> assimilation_code/modules/assimilation/assim_tools_mod</A></LI>
<LI><A href="../assimilation_code/modules/assimilation/cov_cutoff_mod.html"> assimilation_code/modules/assimilation/cov_cutoff_mod</A></LI>
<LI><A href="../assimilation_code/modules/assimilation/filter_mod.html"> assimilation_code/modules/assimilation/filter_mod</A></LI>
<LI><A href="../assimilation_code/modules/assimilation/obs_model_mod.html"> assimilation_code/modules/assimilation/obs_model_mod</A></LI>
<LI><A href="../assimilation_code/modules/assimilation/quality_control_mod.f90"> assimilation_code/modules/assimilation/quality_control.f90</A> (source)</LI>
<LI><A href="../assimilation_code/modules/assimilation/reg_factor_mod.html"> assimilation_code/modules/assimilation/reg_factor_mod</A></LI>
<LI><A href="../assimilation_code/modules/assimilation/sampling_error_correction_mod.f90"> assimilation_code/modules/assimilation/sampling_error_correction_mod.f90</A> (source)</LI>
<LI><A href="../assimilation_code/modules/assimilation/smoother_mod.html"> assimilation_code/modules/assimilation/smoother_mod</A></LI>
</UL>
Location Modules
<UL>
<LI><A href="../assimilation_code/location/annulus/location_mod.f90"> assimilation_code/location/annulus/location_mod.f90</A> (source)</LI>
<LI><A href="../assimilation_code/location/channel/location_mod.html"> assimilation_code/location/channel/location_mod</A></LI>
<LI><A href="../assimilation_code/location/column/location_mod.f90"> assimilation_code/location/column/location_mod.f90</A> (source)</LI>
<LI><A href="../assimilation_code/location/oned/location_mod.html"> assimilation_code/location/oned/location_mod</A></LI>
<LI><A href="../assimilation_code/location/threed/location_mod.f90"> assimilation_code/location/threed/location_mod.f90</A> (source)</LI>
<LI><A href="../assimilation_code/location/threed_cartesian/location_mod.html"> assimilation_code/location/threed_cartesian/location_mod</A></LI>
<LI><A href="../assimilation_code/location/threed_cartesian/xyz_location_mod.f90"> assimilation_code/location/threed_cartesian/xyz_location_mod.f90</A> (source)</LI>
<LI><A href="../assimilation_code/location/threed_sphere/location_mod.html"> assimilation_code/location/threed_sphere/location_mod</A></LI>
<LI><A href="../assimilation_code/location/twod/location_mod.f90"> assimilation_code/location/twod/location_mod.f90</A> (source)</LI>
<LI><A href="../assimilation_code/location/twod_annulus/location_mod.f90"> assimilation_code/location/twod_annulus/location_mod.f90</A> (source)</LI>
<LI><A href="../assimilation_code/location/twod_sphere/location_mod.f90"> assimilation_code/location/twod_sphere/location_mod.f90</A> (source)</LI>
</UL>
Observation Modules
<UL>
<LI><A href="../assimilation_code/modules/observations/DEFAULT_obs_kind_mod.html"> assimilation_code/modules/observations/DEFAULT_obs_kind_mod</A></LI>
<LI><A href="../assimilation_code/modules/observations/forward_operator_mod.f90"> assimilation_code/modules/observations/forward_operator_mod.f90</A> (source)</LI>
<LI><A href="../assimilation_code/modules/observations/obs_kind_mod.html"> assimilation_code/modules/observations/obs_kind_mod</A></LI>
<LI><A href="../assimilation_code/modules/observations/obs_sequence_mod.html"> assimilation_code/modules/observations/obs_sequence_mod</A></LI>
</UL>
I/O Modules
<UL>
<LI><A href="../assimilation_code/modules/io/dart_time_io_mod.f90"> assimilation_code/modules/io/dart_time_io_mod.f90</A> (source)</LI>
<LI><A href="../assimilation_code/modules/io/direct_netcdf_mod.f90"> assimilation_code/modules/io/direct_netcdf_mod.f90</A> (source)</LI>
<LI><A href="../assimilation_code/modules/io/io_filenames_mod.f90"> assimilation_code/modules/io/io_filenames_mod.f90</A> (source)</LI>
<LI><A href="../assimilation_code/modules/io/single_file_io_mod.f90"> assimilation_code/modules/io/single_file_io_mod.f90</A> (source)</LI>
<LI><A href="../assimilation_code/modules/io/state_structure_mod.f90"> assimilation_code/modules/io/state_structure_mod.f90</A> (source)</LI>
<LI><A href="../assimilation_code/modules/io/state_vector_io_mod.f90"> assimilation_code/modules/io/state_vector_io_mod.f90</A> (source)</LI>
</UL>
Utilities Modules
<UL>
<LI><A href="../assimilation_code/modules/utilities/assert_mod.f90"> assimilation_code/modules/utilities/assert_mod.f90</A> (source)</LI>
<LI><A href="../assimilation_code/modules/utilities/cray_win_mod.f90"> assimilation_code/modules/utilities/cray_win_mod.f90</A> (source)</LI>
<LI><A href="../assimilation_code/modules/utilities/distributed_state_mod.f90"> assimilation_code/modules/utilities/distributed_state_mod.f90</A> (source)</LI>
<LI><A href="../assimilation_code/modules/utilities/ensemble_manager_mod.html"> assimilation_code/modules/utilities/ensemble_manager_mod</A></LI>
<LI><A href="../assimilation_code/modules/utilities/obs_impact_mod.f90"> assimilation_code/modules/utilities/obs_impact_mod.f90</A> (source)</LI>
<LI><A href="../assimilation_code/modules/utilities/parse_args_mod.f90"> assimilation_code/modules/utilities/parse_args_mod.f90</A> (source)</LI>
<LI><A href="../assimilation_code/modules/utilities/mpi_utilities_mod.html"> assimilation_code/modules/utilities/mpi_utilities_mod</A></LI>
<LI><A href="../assimilation_code/modules/utilities/random_seq_mod.html"> assimilation_code/modules/utilities/random_seq_mod</A></LI>
<LI><A href="../assimilation_code/modules/utilities/schedule_mod.html"> assimilation_code/modules/utilities/schedule_mod</A></LI>
<LI><A href="../assimilation_code/modules/utilities/sort_mod.f90"> assimilation_code/modules/utilities/sort_mod.f90</A> (source)</LI>
<LI><A href="../assimilation_code/modules/utilities/time_manager_mod.html"> assimilation_code/modules/utilities/time_manager_mod</A></LI>
<LI><A href="../assimilation_code/modules/utilities/types_mod.html"> assimilation_code/modules/utilities/types_mod</A></LI>
<LI><A href="../assimilation_code/modules/utilities/utilities_mod.html"> assimilation_code/modules/utilities/utilities_mod</A></LI>
</UL>
Example Model Module
<UL>
<LI><A href="../models/POP/dart_pop_mod.html"> models/POP/dart_pop_mod</A></LI>
</UL>
Forward Operators Modules
<UL>
<LI><A href="../observations/forward_operators/DEFAULT_obs_def_mod.html"> observations/forward_operators/DEFAULT_obs_def_mod</A></LI>
<LI><A href="../observations/forward_operators/DEFAULT_obs_def_mod.html"> observations/forward_operators/DEFAULT_obs_def_mod</A></LI>
<LI><A href="../observations/forward_operators/obs_def_1d_state_mod.html"> observations/forward_operators/obs_def_1d_state_mod</A></LI>
<LI><A href="../observations/forward_operators/obs_def_AIRS_mod.f90"> observations/forward_operators/obs_def_AIRS_mod.f90</A> (source)</LI>
<LI><A href="../observations/forward_operators/obs_def_altimeter_mod.f90"> observations/forward_operators/obs_def_altimeter_mod.f90</A> (source)</LI>
<LI><A href="../observations/forward_operators/obs_def_AOD_mod.f90"> observations/forward_operators/obs_def_AOD_mod.f90</A> (source)</LI>
<LI><A href="../observations/forward_operators/obs_def_AURA_mod.f90"> observations/forward_operators/obs_def_AURA_mod.f90</A> (source)</LI>
<LI><A href="../observations/forward_operators/obs_def_cice_mod.f90"> observations/forward_operators/obs_def_cice_mod.f90</A> (source)</LI>
<LI><A href="../observations/forward_operators/obs_def_cloud_mod.f90"> observations/forward_operators/obs_def_cloud_mod.f90</A> (source)</LI>
<LI><A href="../observations/forward_operators/obs_def_CO_Nadir_mod.f90"> observations/forward_operators/obs_def_CO_Nadir_mod.f90</A> (source)</LI>
<LI><A href="../observations/forward_operators/obs_def_COSMOS_mod.f90"> observations/forward_operators/obs_def_COSMOS_mod.f90</A> (source)</LI>
<LI><A href="../observations/forward_operators/obs_def_cwp_mod.f90"> observations/forward_operators/obs_def_cwp_mod.f90</A> (source)</LI>
<LI><A href="../observations/forward_operators/obs_def_dew_point_mod.html"> observations/forward_operators/obs_def_dew_point_mod</A></LI>
<LI><A href="../observations/forward_operators/obs_def_dwl_mod.f90"> observations/forward_operators/obs_def_dwl_mod.f90</A> (source)</LI>
<LI><A href="../observations/forward_operators/obs_def_eval_mod.f90"> observations/forward_operators/obs_def_eval_mod.f90</A> (source)</LI>
<LI><A href="../observations/forward_operators/obs_def_gps_mod.html"> observations/forward_operators/obs_def_gps_mod</A></LI>
<LI><A href="../observations/forward_operators/obs_def_gts_mod.f90"> observations/forward_operators/obs_def_gts_mod.f90</A> (source)</LI>
<LI><A href="../observations/forward_operators/obs_def_GWD_mod.f90"> observations/forward_operators/obs_def_GWD_mod.f90</A> (source)</LI>
<LI><A href="../observations/forward_operators/obs_def_metar_mod.f90"> observations/forward_operators/obs_def_metar_mod.f90</A> (source)</LI>
<LI><A href="../observations/forward_operators/obs_def_mod.html"> observations/forward_operators/obs_def_mod</A></LI>
<LI><A href="../observations/forward_operators/obs_def_ocean_mod.html"> observations/forward_operators/obs_def_ocean_mod</A></LI>
<LI><A href="../observations/forward_operators/obs_def_pe2lyr_mod.f90"> observations/forward_operators/obs_def_pe2lyr_mod.f90</A> (source)</LI>
<LI><A href="../observations/forward_operators/obs_def_QuikSCAT_mod.f90"> observations/forward_operators/obs_def_QuikSCAT_mod.f90</A> (source)</LI>
<LI><A href="../observations/forward_operators/obs_def_radar_mod.html"> observations/forward_operators/obs_def_radar_mod</A></LI>
<LI><A href="../observations/forward_operators/obs_def_radiance_mod.f90"> observations/forward_operators/obs_def_radiance_mod.f90</A> (source)</LI>
<LI><A href="../observations/forward_operators/obs_def_reanalysis_bufr_mod.f90"> observations/forward_operators/obs_def_reanalysis_bufr_mod.f90</A> (source)</LI>
<LI><A href="../observations/forward_operators/obs_def_rel_humidity_mod.f90"> observations/forward_operators/obs_def_rel_humidity_mod.f90</A> (source)</LI>
<LI><A href="../observations/forward_operators/obs_def_SABER_mod.f90"> observations/forward_operators/obs_def_SABER_mod.f90</A> (source)</LI>
<LI><A href="../observations/forward_operators/obs_def_simple_advection_mod.f90"> observations/forward_operators/obs_def_simple_advection_mod.f90</A> (source)</LI>
<LI><A href="../observations/forward_operators/obs_def_sqg_mod.f90"> observations/forward_operators/obs_def_sqg_mod.f90</A> (source)</LI>
<LI><A href="../observations/forward_operators/obs_def_surface_mod.f90"> observations/forward_operators/obs_def_surface_mod.f90</A> (source)</LI>
<LI><A href="../observations/forward_operators/obs_def_TES_nadir_mod.f90"> observations/forward_operators/obs_def_TES_nadir_mod.f90</A> (source)</LI>
<LI><A href="../observations/forward_operators/obs_def_tower_mod.f90"> observations/forward_operators/obs_def_tower_mod.f90</A> (source)</LI>
<LI><A href="../observations/forward_operators/obs_def_tpw_mod.f90"> observations/forward_operators/obs_def_tpw_mod.f90</A> (source)</LI>
<LI><A href="../observations/forward_operators/obs_def_upper_atm_mod.f90"> observations/forward_operators/obs_def_upper_atm_mod.f90</A> (source)</LI>
<LI><A href="../observations/forward_operators/obs_def_vortex_mod.f90"> observations/forward_operators/obs_def_vortex_mod.f90</A> (source)</LI>
<!-- LI><A href="../observations/forward_operators/obs_def_vortex_mod.f90"> observations/forward_operators/obs_def_vortex_mod.f90</A> (source)</LI -->
<LI><A href="../observations/forward_operators/obs_def_wind_speed_mod.f90"> observations/forward_operators/obs_def_wind_speed_mod.f90</A> (source)</LI>
</UL>
<P><!-- make sure the 'top' is aligned correctly --></P>
<!--==================================================================-->
<A NAME="Directories"></A>
<div class="top">[<a href="#">top</a>]</div><hr />
<H2>Directory Tree </H2>
<!--==================================================================-->
<table border=0 summary="" cellpadding=5>
<tr>
<th colspan=2 align=left>
NOTE: 'work', 'matlab', and 'shell_scripts' directory names have been removed from this list.
</th>
</tr>
<tr>
<td valign=top>
<pre>
|--assimilation_code
| |--location
| | |--annulus
| | |--channel
| | |--column
| | |--oned
| | |--threed
| | |--threed_cartesian
| | |--threed_sphere
| | |--twod
| | |--twod_annulus
| | |--twod_sphere
| |--modules
| | |--assimilation
| | |--io
| | |--observations
| | |--utilities
| |--programs
| | |--advance_time
| | |--closest_member_tool
| | |--compare_states
| | | |--work
| | |--compute_error
| | |--create_fixed_network_seq
| | |--create_obs_sequence
| | |--fill_inflation_restart
| | |--filter
| | |--gen_sampling_err_table
| | | |--work
| | |--integrate_model
| | |--model_mod_check
| | |--obs_common_subset
| | |--obs_diag
| | | |--oned
| | | |--threed_cartesian
| | | |--threed_sphere
| | |--obs_impact_tool
| | |--obs_loop
| | |--obs_selection
| | |--obs_seq_coverage
| | |--obs_seq_to_netcdf
| | |--obs_sequence_tool
| | |--obs_seq_verify
| | |--perfect_model_obs
| | |--preprocess
| | |--system_simulation
| | | |--final_full_precomputed_tables
| | | |--work
| | |--wakeup_filter
| |--scripts
|--build_templates
|--developer_tests
| |--forward_operators
| |--harnesses
| | |--filename_harness
| | |--read_transpose_write
| |--io
| | |--work
| |--location
| | |--annulus
| | | |--test
| | |--channel
| | | |--test
| | |--column
| | | |--test
| | |--oned
| | | |--test
| | |--threed
| | | |--test
| | |--threed_cartesian
| | | |--test
| | |--threed_sphere
| | | |--test
| | |--twod
| | | |--test
| | |--twod_annulus
| | | |--test
| | |--twod_sphere
| | |--test
| |--mpi_utilities
| | |--tests
| |--obs_sequence
| | |--data
| | |--work
| |--random_seq
| | |--test
| |--reg_factor
| |--time_manager
| |--utilities
| |--work
|--diagnostics
| |--matlab
| |--deprecated
| |--private
|--docs
| |--DART_LAB
| | |--matlab
| | | |--private
| | |--presentation
| |--doxygen
| |--Graphs
| |--html
| | |--boilerplate
| | |--design
| | |--history
| |--images
| |--tutorial
|--observations
|--forward_operators
| |--test
|--obs_converters
|--AIRS
| |--data
| |--output
|--Ameriflux
|--AURA
| |--data
|--AVISO
|--CHAMP
|--cice
| |--data
|--CNOFS
|--COSMOS
| |--data
|--DWL
| |--data
|--even_sphere
|--gnd_gps_vtec
|--gps
| |--cosmic
| | |--20071001
| |--matlab
|--GPSPW
| |--data
|--GTSPP
| |--data
| |--matlab
|--MADIS
| |--data
|--MIDAS
| |--data
|--MODIS
| |--data
|--NCEP
| |--ascii_to_obs
| |--prep_bufr
| |--blk_ublk
| |--convert_bufr
| |--data
| | |--201012
| |--docs
| | |--Reason_codes
| |--exe
| |--lib
| |--src
|--obs_error
|--ok_mesonet
| |--data
|--quikscat
| |--data
|--radar
| |--examples
|--ROMS
| |--data
|--SABER
| |--data
| |--progs
|--snow
| |--data
|--SSEC
| |--data
|--SSUSI
| |--data
|--text
| |--data
|--text_GITM
|--tpw
| |--data
| |--doc
|--tropical_cyclone
| |--data
|--utilities
| |--oned
| |--threed_sphere
|--var
| |--3DVAR_OBSPROC
| |--data
|--WOD
|--data
</pre>
</td>
<td valign=top>
<pre>
|--models
|--9var
|--am2
|--bgrid_solo
| |--fms_src
| | |--atmos_bgrid
| | | |--driver
| | | | |--solo
| | | |--model
| | | |--tools
| | |--atmos_param
| | | |--hs_forcing
| | |--atmos_shared
| | | |--tracer_driver
| | | |--vert_advection
| | |--atmos_solo
| | |--shared
| | |--axis_utils
| | |--constants
| | |--diag_manager
| | |--fft
| | |--field_manager
| | |--fms
| | |--horiz_interp
| | |--mpp
| | |--platform
| | |--sat_vapor_pres
| | |--time_manager
| | |--topography
| | |--tracer_manager
| | |--udunits
| | |--utilities
| |--test
|--cam-fv
| |--deprecated
| |--doc
| |--shell_scripts
| |--cesm1_5
| |--cesm2_0
|--cam-old
| |--deprecated
| |--doc
| |--full_experiment
| |--perfect_model
|--CESM
| |--doc
| |--CESM_DART_assim_modes
|--cice
|--clm
| |--datm
| |--docs
|--cm1
|--coamps
| |--doc
| |--externals
| | |--obs_def
| |--templates
|--coamps_nest
| |--doc
| |--externals
| | |--obs_def
| |--shell_scripts
| | |--COAMPS_RESTART_SCRIPTS
| | |--TEMPLATES
| |--templates
| | |--EXPERIMENT_EXAMPLE
|--dynamo
| |--data
|--ECHAM
|--forced_barot
| |--obs
|--forced_lorenz_96
|--gitm
| |--GITM2
| | |--src
| |--python
| |--testdata1
|--ikeda
|--LMDZ
|--lorenz_04
|--lorenz_63
|--lorenz_84
|--lorenz_96
| |--tests
|--lorenz_96_2scale
|--MITgcm_annulus
|--MITgcm_ocean
| |--inputs
|--model_mod_tools
|--mpas_atm
| |--data
|--mpas_ocn
| |--data
|--NAAPS
|--NCOMMAS
| |--docs
|--noah
| |--ensemble_source
| |--forcing
| |--templates
|--null_model
|--PBL_1d
|--pe2lyr
|--POP
|--ROMS
| |--data
| |--doc
|--rose
|--simple_advection
|--sqg
|--template
|--tiegcm
|--wrf
|--experiments
| |--Radar
| |--IC
| | |--sounding_perturbation
| |--obs
|--namelist
|--PERTURB
| |--3DVAR-COVAR
|--regression
| |--CONUS-V2
| |--CONUS-V3
| |--Global-V3
| |--Radar
| |--WRF
|--WRF_BC
|--WRF_DART_utilities
</pre>
</td>
</tr>
</table>
<P><!-- make sure the 'top' is aligned correctly --></P>
<!--==================================================================-->
<A NAME="OtherDocs"></A>
<div class="top">[<a href="#">top</a>]</div><hr />
<H2>Other Documentation</H2>
<P>
Additional documentation which didn't fit neatly into
the other categories.
</P>
<UL style="list-style: none;">
<LI><A HREF="html/Manhattan_release.html">Manhattan release notes</A></LI>
<LI><A HREF="html/Manhattan_diffs_from_Lanai.html">Brief summary of Manhattan differences from Lanai</A></LI>
<LI><A HREF="html/mpi_intro.html">MPI intro</A></LI>
<LI><A HREF="html/filter_async_modes.html">Filter 'async' modes</A></LI>
<LI><A HREF="../build_templates/mkmf.html">mkmf</A></LI>