predict_tags.pbs

#!/bin/bash -l
# declare a name for this job to be sample_job
#PBS -N SUBJECT
# request the queue (enter the possible names, if omitted, serial is the default)
#PBS -q default
# request 1 node and  request 2 processors per node
#PBS -l nodes=1:ppn=2
# request number of hours of wall time
#PBS -l walltime=WALLTIME
# mail is sent to you when the job starts and when it terminates or aborts
#PBS -m bea
# specify your email address
#PBS -M jessicathompson00@gmail.com
# By default, PBS scripts execute in your home directory, not the
# directory from which they were submitted. The following line
# places you in the directory from which the job was submitted.
# run the program
cd $PBS_O_WORKDIR

dir=/global/data/casey/thompson/brain_tags

if [ ! $subject ];then
    echo "save brain features error: must specify subject"
    subject = 1mar11sj
fi
if [ ! $k ];then
    k = 5
fi

python $dir/brain_tags.py $subject $k