- implemented new
persistentOutputTypeparameter forget_trackdata()to always return atrackdataoremuRtrackdataobject independent of what thecutandnpointsarguments are set to - now removing
levelCanvasOrderentry inremove_levelDefinition()(fixes #156) serve()method now uses GET to deliver media files to the EMU-webApp. This avoids the base64 conversion overhead and is a quite significant load time improvement- explicit error message in
convert_legacyEmuDB()when invalid redundant links are found - better error message in BPF parser
- fixed problem of updating cache. Didn't handle data.frame object that was thought to be a vector correctly!
- fixed a bug in the BPF export function, which meant that WAVE files were only copied into one session
- tweaked
runBASwebservice_maus(); improved performance for presegmented bundles - performance bump for
fapply()by preallocating result matrix - performance bump for
trapply()by preallocating result matrix - performance bump for
mel.spectral()by preallocating result matrix - performance bump for
bark.spectral()by preallocating result matrix - updated DBI calls to comply with the latest best practices (using
DBI::dbExecute()instead ofDBI::dbGetQuery()for non-SELECTqueries) - BPF collection exporter documented and now public
export_TextGridCollection()now handles partial includes of bundle and session names correctly (issue #147)- added missing check if
anagestConfigis defined torename_attributeDefinition() - setting useBytes to T to avoid reencoding under windows
- fixed bug in
add_ssffTrackDefinition()that was trying to accessfpwhich was renamed in a refactor tofilesDf - fixed export to autodetect S3 methods (cbind & rbind for trackdata)
- some changes to the parameter names in the BAS webservice functions
- convert_txtCollection and convert_BPFCollection now name topmost item "bundle"
- added functions to set and get level descriptions in DBconfig
- BAS webservice functions now perform a cache update prior to departure
- added multiple perspectives to ae demo database
- choosing explicit paths with intersecting hierarchies now possible
- remove levelDef & linkDef now implement force parameters
- new function convert_txtCollection converts plain text collections into single-node emuDB
- new functions runBASwebservice_* that call various BAS webservices from inside emuR
- NULLing out empty DFs on list_level/linkDefs for more consistent API
newLinkDefTypeargument implemented inautobuild_linkFromTimes()to generate linkDefinition if so desired- automatically removing superlevel from
levelCanvasOrderifconvertSuperlevelis set toTRUEinautobuild_linkFromTimes()
- wrapped
readChars inenc2utf8to avoid encodings issues on windows - updating label table correctly on add_attributeDefinition() (#138)
- runBASwebservice_maus / minni / all now no longer ignore unlinked items (idx -1) but treat them as linkless segments
- commented out
cat()intrain()function be be less verbose - BAS webservice calls now get their own temp directories (UUID based). This avoids race conditions when several scripts are running in parallel.
- convert_txtCollection now treats perspectives as array (as it should)
- added new
EMUwebAppConfig -> perspectives -> signalCanvases -> minMaxValLimsconfig option to emuDB vignette - requery_hier + requery_seq now implement the same timeRefSegmentLevel parameter as query (#135)
- fixed requery_hier() bug of requery on same attribute definition
- fixed requery_hier() bug of requery on same level but different attribute definition
- rewrite of query engine to not require links_ext table any more (== redundant links)
- calcTimes parameter added to query() / requery_seq() / requery_hier() to make calculating times optional (extreme performance boost if no times have to be calculated)
- rewrite of annotJSONcharToBundleAnnotDFs() for faster loads emuDBs containing large annotJSONs
- replaced tidyjson as annot.json parser with own solution at tidyjson didn't scale well on larger annotation files
- added verbose parameter to export_TextGridCollection()
- improved pre-check of dir exists in export_TextGridCollection()
- added new replace_itemLabels function
- improved export_TextGridCollection() doc
- improved replace_itemLables() speed
- implemented rename_emuDB() (#116)
- implemented duplicate_level() (#113)
- implemented linkDuplicates parameter in duplicate_level()
- autobuild_linkFromTimes() speed improvements
- FUNCQ queries (start(),end(), medial()) now additionally support TRUE & FALSE and T & F values (vs. 0 & 1)
- added attrDefNames column to list_levelDefinitions() output
- can now deal with read only emuDBs by copying the cache to tempdir() and making it writable for the user
- added start_item_seq_idx and end_item_seq_idx to emuRsegs object
- added start_item_seq_idx and end_item_seq_idx type values to all intermediate result tables
- added optional function to reduce hierarchical query results to left and right most children only (large performance gain on calcTimes = T)
- rewriting annot.json files now updates MD5 sums as well (avoids unnecessary reload on next load_emuDB)
- rewriting annot.json files now writes all (including empty / missing) attributeDef. labels
- fixed bad DBconfig gen. on add_perspective
- fixed list_linkDefinitions() returning strings as factors
- fixed bad error message when passing in ITEM levels to autobuild_linkFromTimes()
- fixed incorrect handling of DBconfig when writeToFS was set to FALSE (writeToFS is now called rewriteAllAnnots)
- also allowing "time = " in TextTiers
- "levels of type 'EVENT' are not allowed to be super levels (== parents) in a domination relationship" constraint enforced in add_linkDefinition
- added "MEDIAFILE_SAMPLES" as constant name to access audio samples to get_trackdata() function
- improved error message to include tgPath in create_DBconfigFromTextGrid function
- no integer return value returned by create_emuRdemoData() any more! It was implicitly returned from wrassp function call...
- improved the slow overlap checking function in the BPF parser (is now O(n) instead of O(n^2))
- fixed col naming problems for new (unreleased) RSQLite version
- added export_TextGridCollection() function
- improved doc for get_trackdata
- constant naming of EMU-SDMS vs EMU_SDMS in various files
- rewriting all annotation file on add_levelDefinition, remove_levelDefinition
- fixed problem in conversion to JSON with empty items array (object '{}' vs array '[]')
- fixed problem of keywords "number" | "time" | "xmin" | ... in labels causing TextGrid parser to fail
- fixed problem with to lax RegEx in TextGrid parser
- fixed validation problem with missing levels regarding types
- get_trackdata with onTheFly calculation now reuses AsspDataObj if the current utterance is the same as the previous (large performance gain especially on long audio files)
- checking if DBconfig exists for better error message if 'name' field is not set correctly in DBconfig
- setting PRAGMA temp_store = 2; for SQLite connections
- not extracting tables to R if no RegEx needed to create filtered_tmp tables (performance gain when querying large emuDBs)
- convert_BPFCollection can now assigns the same label to more than one item when unifying tiers
- newline at the end of load_emuDB if no redundant links are built
- queries using dominates operator '^' don't use linksExt table anymore -> large performances benefits
- only using _filtered_tmp tables if RegEx patterns are used
- changed primary key on items table which leads to massive performance gains (deleting _emuDBcache.sqlite required)
- fixed error handling of create_emuRtrackdata + added @export to roxygen doc
- invalid annotJSONs generated by import_mediaFiles fixed
- convert_TextGridCollection can now handle nested folders again
- invalid UUIDs in DBConfig produced by convert_BPFCollection. Also added additional unit test to detect this.
- list_bundles uses session argument again
- fixed "Expression tree is too large (maximum depth 1000)" error in get_trackdata with long emuRsegs lists
- R depends version bump to 3.2.0 (as requested by CRAN maintainer)
- updated testthat::expect_less_than to expect_lt calls (due to deprecated warnings)
- Using new .keep_all = T parameter of dplyr
- removed legacy version of EQL vignette (overlooked as inst/doc was in .gitignore)
- skipping in-depth thorough tests on CRAN for query and autobuild SQL functions
- fixed problem of interm_res_tables already being present with queries that have multiple recursion depth on both sides of either -> or ^ operand (e.g. query (ae , "[[[Phonetic = n -> Phonetic =z] -> Phonetic = S ] ^ [Text = friends -> Text = she]]"))
- fixed bad URL in README.md
- added CITATION file
- renamed SQL tables & columns from camel case to underscore notation
- variable SQL backend implementation
- multiple check fixes on various platforms
serveproblem with internalVars bug fixed- file locking problem that caused vignettes to fail under windows problem fixed
- massive refactor of all functions that used to refer to an emuDB by
name and optionally by its UUID. They now use the new emuDBhandle object
that is now returned by the
load_emuDB()function. convert_XXX_to_emuDB()functions renamed toconvert_XXX()