requirements.txt

git+https://github.com/NLPatVCU/medaCy.git
git+https://github.com/NLPatVCU/medaCy_model_clinical_notes.git
attrs==19.1.0
awscli==1.16.235
blis==0.2.4
botocore==1.12.225
certifi==2019.6.16
chardet==3.0.4
Click==7.0
colorama==0.3.9
conllu==1.4
cycler==0.10.0
cymem==2.0.2
dill==0.3.0
docutils==0.15.2
Flask==1.1.1
idna==2.8
itsdangerous==1.1.0
Jinja2==2.10.1
jmespath==0.9.4
joblib==0.13.2
jsonschema==3.0.2
kiwisolver==1.1.0
MarkupSafe==1.1.1
matplotlib==3.1.1
msgpack==0.5.6
msgpack-numpy==0.4.3.2
multiprocess==0.70.8
murmurhash==1.0.2
nmslib==1.8.1
numpy==1.16.1
opencv-python==4.1.1.26
pathos==0.2.4
plac==0.9.6
pox==0.2.6
ppft==1.6.6.1
preshed==2.0.1
pyasn1==0.4.7
pybind11==2.3.0
pyparsing==2.4.2
pyrsistent==0.15.4
python-crfsuite==0.9.6
python-dateutil==2.8.0
PyYAML==5.1.2
requests==2.22.0
rsa==3.4.2
s3transfer==0.2.1
scikit-learn==0.21.3
scipy==1.3.1
scispacy==0.2.2
six==1.12.0
sklearn-crfsuite==0.3.6
spacy==2.1.4
srsly==0.1.0
tabulate==0.8.3
thinc==7.0.8
tqdm==4.35.0
urllib3==1.25.3
wasabi==0.2.2
Werkzeug==0.15.6
xmltodict==0.12.0
gunicorn==19.9.0