From c9676138d06ecd960dce10332e3e1e719d975026 Mon Sep 17 00:00:00 2001 From: Tom Saunders Date: Fri, 26 Jan 2024 22:50:51 +1300 Subject: [PATCH] Add styling to query, link to dashboard --- data/oa_nz_2023.csv | 842 +++++++++++++++--------------- oa-dashboard.Rmd | 2 +- open-alex-query.Rmd | 9 +- query.html | 1185 +++++++++++++++++++++++++++++++++++++++++++ 4 files changed, 1613 insertions(+), 425 deletions(-) create mode 100644 query.html diff --git a/data/oa_nz_2023.csv b/data/oa_nz_2023.csv index 9187c41..83e5302 100644 --- a/data/oa_nz_2023.csv +++ b/data/oa_nz_2023.csv @@ -1,29 +1,29 @@ "institution","year","oa_type","value","pc" -"University of Auckland",2010,"closed",2207,73.1036767141438 -"University of Auckland",2010,"gold",291,9.63895329579331 -"University of Auckland",2010,"hybrid",273,9.0427293805896 -"University of Auckland",2010,"green",149,4.93540907585293 -"University of Auckland",2010,"bronze",99,3.2792315336204 -"Auckland University of Technology",2010,"closed",447,76.2798634812287 +"University of Auckland",2010,"closed",2207,73.1278992710404 +"University of Auckland",2010,"gold",291,9.64214711729622 +"University of Auckland",2010,"hybrid",272,9.01259111994698 +"University of Auckland",2010,"green",149,4.93704440026508 +"University of Auckland",2010,"bronze",99,3.28031809145129 +"Auckland University of Technology",2010,"closed",446,76.1092150170648 "Auckland University of Technology",2010,"gold",66,11.2627986348123 "Auckland University of Technology",2010,"hybrid",55,9.38566552901024 "Auckland University of Technology",2010,"green",12,2.04778156996587 -"Auckland University of Technology",2010,"bronze",6,1.02389078498294 +"Auckland University of Technology",2010,"bronze",7,1.19453924914676 "University of Waikato",2010,"closed",502,70.6047819971871 "University of Waikato",2010,"gold",123,17.2995780590717 "University of Waikato",2010,"hybrid",38,5.34458509142053 "University of Waikato",2010,"green",37,5.20393811533052 "University of Waikato",2010,"bronze",11,1.54711673699015 -"Massey University",2010,"closed",1081,76.5038924274593 -"Massey University",2010,"gold",123,8.70488322717622 -"Massey University",2010,"hybrid",101,7.14791224345364 -"Massey University",2010,"green",67,4.74168435951875 -"Massey University",2010,"bronze",41,2.90162774239207 -"Victoria University of Wellington",2010,"closed",933,79.2020373514431 -"Victoria University of Wellington",2010,"gold",104,8.82852292020373 -"Victoria University of Wellington",2010,"hybrid",87,7.38539898132428 -"Victoria University of Wellington",2010,"green",40,3.3955857385399 -"Victoria University of Wellington",2010,"bronze",14,1.18845500848896 +"Massey University",2010,"closed",1079,76.5248226950355 +"Massey University",2010,"gold",123,8.72340425531915 +"Massey University",2010,"hybrid",100,7.09219858156028 +"Massey University",2010,"green",67,4.75177304964539 +"Massey University",2010,"bronze",41,2.90780141843972 +"Victoria University of 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Technology",2021,"closed",898,50.4211117349804 -"Auckland University of Technology",2021,"gold",376,21.1117349803481 -"Auckland University of Technology",2021,"hybrid",217,12.1841661987647 -"Auckland University of Technology",2021,"green",178,9.99438517686693 -"Auckland University of Technology",2021,"bronze",112,6.28860190903986 -"University of Waikato",2021,"closed",613,50.8713692946058 -"University of Waikato",2021,"gold",219,18.1742738589212 -"University of Waikato",2021,"hybrid",200,16.597510373444 -"University of Waikato",2021,"green",102,8.46473029045643 -"University of Waikato",2021,"bronze",71,5.89211618257261 -"Massey University",2021,"closed",1140,48.885077186964 -"Massey University",2021,"gold",647,27.7444253859348 -"Massey University",2021,"hybrid",255,10.934819897084 -"Massey University",2021,"green",151,6.47512864493997 -"Massey University",2021,"bronze",139,5.96054888507719 -"Victoria University of Wellington",2021,"closed",998,49.6517412935323 -"Victoria University of Wellington",2021,"gold",416,20.6965174129353 -"Victoria University of Wellington",2021,"hybrid",326,16.2189054726368 -"Victoria University of Wellington",2021,"green",151,7.51243781094527 -"Victoria University of Wellington",2021,"bronze",119,5.92039800995025 +"University of Auckland",2021,"closed",3218,50.7490932029648 +"University of Auckland",2021,"gold",1344,21.1953950480997 +"University of Auckland",2021,"hybrid",829,13.0736476896389 +"University of Auckland",2021,"green",481,7.58555432897019 +"University of Auckland",2021,"bronze",469,7.39630973032645 +"Auckland University of Technology",2021,"closed",897,50.4215851602024 +"Auckland University of Technology",2021,"gold",375,21.079258010118 +"Auckland University of Technology",2021,"hybrid",217,12.1978639685216 +"Auckland University of Technology",2021,"green",178,10.0056211354694 +"Auckland University of Technology",2021,"bronze",112,6.29567172568859 +"University of Waikato",2021,"closed",613,50.9136212624585 +"University of Waikato",2021,"gold",220,18.2724252491694 +"University of Waikato",2021,"hybrid",199,16.5282392026578 +"University of Waikato",2021,"green",101,8.38870431893688 +"University of Waikato",2021,"bronze",71,5.89700996677741 +"Massey University",2021,"closed",1140,48.8641234462066 +"Massey University",2021,"gold",647,27.7325332190313 +"Massey University",2021,"hybrid",255,10.9301328761252 +"Massey University",2021,"green",151,6.47235319331333 +"Massey University",2021,"bronze",140,6.00085726532362 +"Victoria University of Wellington",2021,"closed",1000,49.800796812749 +"Victoria University of Wellington",2021,"gold",414,20.6175298804781 +"Victoria University of Wellington",2021,"hybrid",325,16.1852589641434 +"Victoria University of Wellington",2021,"green",150,7.47011952191235 +"Victoria University of Wellington",2021,"bronze",119,5.92629482071713 "University of Canterbury",2021,"closed",801,45.8762886597938 "University of Canterbury",2021,"gold",341,19.5303550973654 "University of Canterbury",2021,"hybrid",324,18.5567010309278 @@ -474,88 +474,88 @@ "Lincoln University",2021,"hybrid",52,9.45454545454546 "Lincoln University",2021,"green",43,7.81818181818182 "Lincoln University",2021,"bronze",22,4 -"University of Otago",2021,"closed",1855,45.6222331529759 -"University of Otago",2021,"gold",974,23.9547466797836 -"University of Otago",2021,"hybrid",566,13.9203148057059 -"University of Otago",2021,"green",342,8.41121495327103 -"University of Otago",2021,"bronze",329,8.09149040826365 -"University of Auckland",2022,"closed",2683,45.2903443619176 -"University of Auckland",2022,"gold",1399,23.6158001350439 -"University of Auckland",2022,"hybrid",864,14.5847400405132 -"University of Auckland",2022,"green",699,11.7994598244429 -"University of Auckland",2022,"bronze",279,4.70965563808238 -"Auckland University of Technology",2022,"closed",649,42.1155094094744 -"Auckland University of Technology",2022,"gold",420,27.255029201817 -"Auckland University of Technology",2022,"hybrid",255,16.5476963011032 -"Auckland University of Technology",2022,"green",156,10.1232965606749 -"Auckland University of Technology",2022,"bronze",61,3.95846852693056 -"University of Waikato",2022,"closed",564,47 -"University of Waikato",2022,"gold",276,23 -"University of Waikato",2022,"hybrid",188,15.6666666666667 +"University of Otago",2021,"closed",1855,45.6334563345633 +"University of Otago",2021,"gold",973,23.9360393603936 +"University of Otago",2021,"hybrid",566,13.9237392373924 +"University of Otago",2021,"green",344,8.46248462484625 +"University of Otago",2021,"bronze",327,8.04428044280443 +"University of Auckland",2022,"closed",2681,45.2871621621622 +"University of Auckland",2022,"gold",1396,23.5810810810811 +"University of Auckland",2022,"hybrid",863,14.5777027027027 +"University of Auckland",2022,"green",698,11.7905405405405 +"University of Auckland",2022,"bronze",282,4.76351351351351 +"Auckland University of Technology",2022,"closed",648,41.9961114711601 +"Auckland University of Technology",2022,"gold",418,27.0900842514582 +"Auckland University of Technology",2022,"hybrid",254,16.4614387556708 +"Auckland University of Technology",2022,"green",156,10.1101749837978 +"Auckland University of Technology",2022,"bronze",67,4.34219053791316 +"University of Waikato",2022,"closed",565,47.0833333333333 +"University of Waikato",2022,"gold",275,22.9166666666667 +"University of Waikato",2022,"hybrid",187,15.5833333333333 "University of Waikato",2022,"green",140,11.6666666666667 -"University of Waikato",2022,"bronze",32,2.66666666666667 -"Massey University",2022,"closed",912,41.6819012797075 -"Massey University",2022,"gold",657,30.0274223034735 -"Massey University",2022,"hybrid",312,14.2595978062157 -"Massey University",2022,"green",227,10.3747714808044 -"Massey University",2022,"bronze",80,3.6563071297989 +"University of Waikato",2022,"bronze",33,2.75 +"Massey University",2022,"closed",911,41.655235482396 +"Massey University",2022,"gold",655,29.949702789209 +"Massey University",2022,"hybrid",309,14.1289437585734 +"Massey University",2022,"green",227,10.3795153177869 +"Massey University",2022,"bronze",85,3.88660265203475 "Victoria University of Wellington",2022,"closed",971,46.5261140392909 -"Victoria University of Wellington",2022,"gold",371,17.7767129851461 -"Victoria University of Wellington",2022,"hybrid",335,16.0517489218975 +"Victoria University of Wellington",2022,"gold",369,17.680881648299 +"Victoria University of Wellington",2022,"hybrid",336,16.099664590321 "Victoria University of Wellington",2022,"green",295,14.1351221849545 -"Victoria University of Wellington",2022,"bronze",115,5.51030186871107 -"University of Canterbury",2022,"closed",698,42.0481927710843 -"University of Canterbury",2022,"gold",385,23.1927710843373 -"University of Canterbury",2022,"hybrid",281,16.9277108433735 -"University of Canterbury",2022,"green",231,13.9156626506024 -"University of Canterbury",2022,"bronze",65,3.91566265060241 -"Lincoln University",2022,"closed",209,43.7238493723849 -"Lincoln University",2022,"gold",178,37.2384937238494 -"Lincoln University",2022,"hybrid",51,10.6694560669456 -"Lincoln University",2022,"green",30,6.27615062761506 -"Lincoln University",2022,"bronze",10,2.09205020920502 -"University of Otago",2022,"closed",1432,38.9236205490622 -"University of Otago",2022,"gold",943,25.6319652079369 -"University of Otago",2022,"hybrid",582,15.8195161728731 -"University of Otago",2022,"green",529,14.3789073117695 -"University of Otago",2022,"bronze",193,5.24599075835825 -"University of Auckland",2023,"closed",2369,42.2809209352133 -"University of Auckland",2023,"gold",1324,23.6301981081563 -"University of Auckland",2023,"hybrid",1156,20.6318043905051 -"University of Auckland",2023,"green",399,7.12118507942174 -"University of Auckland",2023,"bronze",355,6.33589148670355 -"Auckland University of Technology",2023,"closed",525,37.4732334047109 -"Auckland University of Technology",2023,"gold",378,26.9807280513919 -"Auckland University of Technology",2023,"hybrid",334,23.8401142041399 -"Auckland University of Technology",2023,"green",88,6.28122769450393 -"Auckland University of Technology",2023,"bronze",76,5.42469664525339 -"University of Waikato",2023,"closed",516,45.6637168141593 -"University of Waikato",2023,"gold",290,25.6637168141593 -"University of Waikato",2023,"hybrid",203,17.9646017699115 -"University of Waikato",2023,"green",71,6.28318584070797 -"University of Waikato",2023,"bronze",50,4.42477876106195 -"Massey University",2023,"closed",688,37.289972899729 -"Massey University",2023,"gold",514,27.8590785907859 -"Massey University",2023,"hybrid",462,25.0406504065041 -"Massey University",2023,"green",100,5.42005420054201 -"Massey University",2023,"bronze",81,4.39024390243902 -"Victoria University of Wellington",2023,"closed",764,42.4444444444444 -"Victoria University of Wellington",2023,"gold",453,25.1666666666667 -"Victoria University of Wellington",2023,"hybrid",293,16.2777777777778 -"Victoria University of Wellington",2023,"green",149,8.27777777777778 -"Victoria University of Wellington",2023,"bronze",141,7.83333333333333 -"University of Canterbury",2023,"closed",624,35.8826912018401 -"University of Canterbury",2023,"gold",490,28.1771132834963 -"University of Canterbury",2023,"hybrid",363,20.8740655549166 -"University of Canterbury",2023,"green",132,7.59056929269695 -"University of Canterbury",2023,"bronze",130,7.47556066705003 -"Lincoln University",2023,"closed",153,34.304932735426 -"Lincoln University",2023,"gold",132,29.5964125560538 -"Lincoln University",2023,"hybrid",117,26.2331838565022 -"Lincoln University",2023,"green",29,6.50224215246637 +"Victoria University of Wellington",2022,"bronze",116,5.55821753713464 +"University of Canterbury",2022,"closed",698,42.0989143546442 +"University of Canterbury",2022,"gold",382,23.0398069963812 +"University of Canterbury",2022,"hybrid",280,16.8878166465621 +"University of Canterbury",2022,"green",232,13.9927623642943 +"University of Canterbury",2022,"bronze",66,3.98069963811821 +"Lincoln University",2022,"closed",209,44 +"Lincoln University",2022,"gold",175,36.8421052631579 +"Lincoln University",2022,"hybrid",51,10.7368421052632 +"Lincoln University",2022,"green",30,6.31578947368421 +"Lincoln University",2022,"bronze",10,2.10526315789474 +"University of Otago",2022,"closed",1430,38.8586956521739 +"University of Otago",2022,"gold",943,25.625 +"University of Otago",2022,"hybrid",581,15.7880434782609 +"University of Otago",2022,"green",530,14.4021739130435 +"University of Otago",2022,"bronze",196,5.32608695652174 +"University of Auckland",2023,"closed",2381,42.4420677361854 +"University of Auckland",2023,"gold",1292,23.030303030303 +"University of Auckland",2023,"hybrid",1128,20.1069518716578 +"University of Auckland",2023,"green",457,8.14616755793226 +"University of Auckland",2023,"bronze",352,6.27450980392157 +"Auckland University of Technology",2023,"closed",529,37.4645892351275 +"Auckland University of Technology",2023,"gold",365,25.8498583569405 +"Auckland University of Technology",2023,"hybrid",322,22.8045325779037 +"Auckland University of Technology",2023,"green",122,8.64022662889518 +"Auckland University of Technology",2023,"bronze",74,5.24079320113314 +"University of Waikato",2023,"closed",518,45.5584872471416 +"University of Waikato",2023,"gold",281,24.7141600703606 +"University of Waikato",2023,"hybrid",199,17.5021987686895 +"University of Waikato",2023,"green",70,6.15655233069481 +"University of Waikato",2023,"bronze",69,6.06860158311346 +"Massey University",2023,"closed",687,37.2156013001083 +"Massey University",2023,"gold",508,27.5189599133261 +"Massey University",2023,"hybrid",458,24.8104008667389 +"Massey University",2023,"green",112,6.06717226435536 +"Massey University",2023,"bronze",81,4.38786565547129 +"Victoria University of Wellington",2023,"closed",767,42.4930747922438 +"Victoria University of Wellington",2023,"gold",445,24.6537396121884 +"Victoria University of Wellington",2023,"hybrid",283,15.6786703601108 +"Victoria University of Wellington",2023,"green",169,9.36288088642659 +"Victoria University of Wellington",2023,"bronze",141,7.81163434903047 +"University of Canterbury",2023,"closed",625,35.8783008036739 +"University of Canterbury",2023,"gold",482,27.6693455797933 +"University of Canterbury",2023,"hybrid",353,20.264064293915 +"University of Canterbury",2023,"green",151,8.66819747416762 +"University of Canterbury",2023,"bronze",131,7.52009184845006 +"Lincoln University",2023,"closed",154,34.5291479820628 +"Lincoln University",2023,"gold",131,29.372197309417 +"Lincoln University",2023,"hybrid",114,25.5605381165919 +"Lincoln University",2023,"green",32,7.17488789237668 "Lincoln University",2023,"bronze",15,3.36322869955157 -"University of Otago",2023,"closed",1173,34.7246891651865 -"University of Otago",2023,"gold",900,26.6429840142096 -"University of Otago",2023,"hybrid",803,23.7714624037892 -"University of Otago",2023,"green",254,7.51924215512137 -"University of Otago",2023,"bronze",248,7.34162226169331 +"University of Otago",2023,"closed",1176,34.7517730496454 +"University of Otago",2023,"gold",875,25.8569739952719 +"University of Otago",2023,"hybrid",789,23.3156028368794 +"University of Otago",2023,"green",299,8.83569739952719 +"University of Otago",2023,"bronze",245,7.23995271867612 diff --git a/oa-dashboard.Rmd b/oa-dashboard.Rmd index 1020c35..af7438a 100644 --- a/oa-dashboard.Rmd +++ b/oa-dashboard.Rmd @@ -14,7 +14,7 @@ knitr::opts_chunk$set(fig.align="center") library(tidyverse) ``` -This dashboard reads in data extracted from the Open Alex API via [this query](open-alex-query.Rmd), calculates a variety of metrics, and visualises the data in a series of plots to show trends at a national and institution-specific level since 2010. Plots are shown on the page and saved into the `/fig` directory. +This dashboard reads in data extracted from the Open Alex API via [this query](query.html), calculates a variety of metrics, and visualises the data in a series of plots to show trends at a national and institution-specific level since 2010. Plots are shown on the page and saved into the `/fig` directory. ```{r} # Get most current full year diff --git a/open-alex-query.Rmd b/open-alex-query.Rmd index afa62a0..5539807 100644 --- a/open-alex-query.Rmd +++ b/open-alex-query.Rmd @@ -1,13 +1,16 @@ --- title: "Open Alex Query" author: "Tom Saunders" -output: html_document +output: + html_document: + css: "style.css" +knit: (function(inputFile, encoding) { rmarkdown::render(inputFile, encoding = encoding, output_file = file.path(dirname(inputFile), 'query.html')) }) --- This script queries the Open Alex API to retrieve the publication status for articles, books, and book chapters with an author affiliated with a NZ university. It determines the current year, retrieves data from 2010 up to the previous year, and saves the data as `/data/oa_nz_[year].csv` with the latest year of data appended. -This data is manipulated and visualised in a series of plots by the [OA Dashboard](oa-dashboard-Rmd). +This data is manipulated and visualised in a series of plots by the [OA Dashboard](index.html). -```{r, message=FALSE} +```{r, message=FALSE, warning=FALSE} library(jsonlite) library(tidyverse) diff --git a/query.html b/query.html new file mode 100644 index 0000000..7e80b5a --- /dev/null +++ b/query.html @@ -0,0 +1,1185 @@ + + + + + + + + + + + + + + +Open Alex Query + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
+ + + + + + + +

This script queries the Open Alex API to retrieve the publication +status for articles, books, and book chapters with an author affiliated +with a NZ university. It determines the current year, retrieves data +from 2010 up to the previous year, and saves the data as +/data/oa_nz_[year].csv with the latest year of data +appended.

+

This data is manipulated and visualised in a series of plots by the +OA Dashboard.

+
library(jsonlite)
+library(tidyverse)
+
+# Get institutions and rors
+
+institutions <- data.frame(institution  = c("University of Auckland",
+                                            "Auckland University of Technology",
+                                            "University of Waikato",
+                                            "Massey University",
+                                            "Victoria University of Wellington",
+                                            "University of Canterbury",
+                                            "Lincoln University",
+                                            "University of Otago"),
+                      ror = c("https://ror.org/03b94tp07",
+                              "https://ror.org/01zvqw119",
+                              "https://ror.org/013fsnh78",
+                              "https://ror.org/052czxv31",
+                              "https://ror.org/0040r6f76",
+                              "https://ror.org/03y7q9t39",
+                              "https://ror.org/04ps1r162",
+                              "https://ror.org/01jmxt844")
+)
+
+# Get most current full year
+
+prev_year <- as.numeric(format(Sys.Date(), "%Y"))-1
+pub_years <- data.frame("years" = as.factor(2010:prev_year))
+
+# Define query parameters
+
+parameters <- paste(c(
+  "is_paratext:false",
+  "type:article|book|book-chapter",
+  "is_retracted:false"), 
+  collapse = ",")
+
+group <- "&group_by=oa_status"
+
+# Assemble queries
+
+ror_year <- do.call(paste0, (expand.grid(paste0(institutions$ror, ",", "publication_year:"), pub_years$years)))
+
+req_nz <- paste0("https://api.openalex.org/works?filter=institutions.ror:",
+                 ror_year,
+                 ",",
+                 parameters,
+                 group)
+
+# Loop through URLs to make requests
+
+raw_nz <- NULL
+
+for (i in 1:length(req_nz)) {
+  raw_nz[[i]] <- (read_json(req_nz[[i]], simplifyVector = TRUE))
+}
+
+# Flatten raw JSON
+
+oa_nz <- enframe(unlist(raw_nz))
+oa_nz$value <- as.numeric(oa_nz$value)
+
+# Filter to relevant rows
+
+oa_nz <- oa_nz |> 
+  filter(str_detect(oa_nz$name, "group_by.count")) |> 
+  mutate(
+    institution = rep(institutions$institution, each = 5, times = 14),
+    year = rep(c(2010:prev_year), each = 40),
+    oa_type = rep(c("closed", "gold", "hybrid", "green", "bronze"), times = 112),
+  ) |> 
+  group_by(institution, year) |> 
+  mutate(
+    pc = (value / sum(value) * 100),
+  ) |> 
+  select(institution, year, oa_type, value, pc)
+
+# Export data to .csv with latest year appended
+
+write.csv(oa_nz, paste0("data/oa_nz_", prev_year, ".csv"), row.names = FALSE)
+ + + + +
+ + + + + + + + + + + + + + +