From caf26574b5b7e6796386ee36a4770bad091a12c3 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Toomas=20Erik=20Anij=C3=A4rv?= <toomaserikanijarv@gmail.com>
Date: Sun, 3 Mar 2024 11:38:13 +0100
Subject: [PATCH] github actions publishing to pypi

---
 .github/workflows/publish-to-pypi.yml | 93 +++++++++++++++++++++++++++
 README.md                             |  6 +-
 2 files changed, 96 insertions(+), 3 deletions(-)
 create mode 100644 .github/workflows/publish-to-pypi.yml

diff --git a/.github/workflows/publish-to-pypi.yml b/.github/workflows/publish-to-pypi.yml
new file mode 100644
index 0000000..db52493
--- /dev/null
+++ b/.github/workflows/publish-to-pypi.yml
@@ -0,0 +1,93 @@
+name: Publish to PyPI
+
+on: push
+
+jobs:
+  build:
+    name: Build distribution
+    runs-on: ubuntu-latest
+
+    steps:
+    - uses: actions/checkout@v4
+    - name: Set up Python
+      uses: actions/setup-python@v4
+      with:
+        python-version: "3.x"
+    - name: Install pypa/build
+      run: >-
+        python3 -m
+        pip install
+        build
+        --user
+    - name: Build a binary wheel and a source tarball
+      run: python3 -m build
+    - name: Store the distribution packages
+      uses: actions/upload-artifact@v3
+      with:
+        name: python-package-distributions
+        path: dist/
+
+  publish-to-pypi:
+    name: >-
+      Publish to PyPI
+    if: startsWith(github.ref, 'refs/tags/')  # only publish to PyPI on tag pushes
+    needs:
+    - build
+    runs-on: ubuntu-latest
+    environment:
+      name: pypi
+      url: https://pypi.org/p/HLR
+    permissions:
+      id-token: write  # IMPORTANT: mandatory for trusted publishing
+
+    steps:
+    - name: Download all the dists
+      uses: actions/download-artifact@v3
+      with:
+        name: python-package-distributions
+        path: dist/
+    - name: Publish distribution 📦 to PyPI
+      uses: pypa/gh-action-pypi-publish@release/v1
+
+  github-release:
+    name: >-
+      Sign the Python 🐍 distribution 📦 with Sigstore
+      and upload them to GitHub Release
+    needs:
+    - publish-to-pypi
+    runs-on: ubuntu-latest
+
+    permissions:
+      contents: write  # IMPORTANT: mandatory for making GitHub Releases
+      id-token: write  # IMPORTANT: mandatory for sigstore
+
+    steps:
+    - name: Download all the dists
+      uses: actions/download-artifact@v3
+      with:
+        name: python-package-distributions
+        path: dist/
+    - name: Sign the dists with Sigstore
+      uses: sigstore/gh-action-sigstore-python@v1.2.3
+      with:
+        inputs: >-
+          ./dist/*.tar.gz
+          ./dist/*.whl
+    - name: Create GitHub Release
+      env:
+        GITHUB_TOKEN: ${{ github.token }}
+      run: >-
+        gh release create
+        '${{ github.ref_name }}'
+        --repo '${{ github.repository }}'
+        --notes ""
+    - name: Upload artifact signatures to GitHub Release
+      env:
+        GITHUB_TOKEN: ${{ github.token }}
+      # Upload to GitHub Release using the `gh` CLI.
+      # `dist/` contains the built packages, and the
+      # sigstore-produced signatures and certificates.
+      run: >-
+        gh release upload
+        '${{ github.ref_name }}' dist/**
+        --repo '${{ github.repository }}'
diff --git a/README.md b/README.md
index bc64990..aaaf610 100644
--- a/README.md
+++ b/README.md
@@ -119,7 +119,7 @@ Model Level 2 Diagnostics:
 :-------------------------:|:-------------------------:
 
 #### Documentation (WIP)
-Visit the documentation for more information.
+Docs is currently outdated - it currently displays the old version of the package. See the Usage above for all available functionality.
  <https://hlr-hierarchical-linear-regression.readthedocs.io>
 
 ## Citation
@@ -129,9 +129,9 @@ Please use Zenodo DOI for citing the package in your work.
 
 #### Example
 
-Toomas Erik Anijärv, & Rory Boyle. (2023). teanijarv/HLR: v0.1.4 (v0.1.4). Zenodo. https://doi.org/10.5281/zenodo.7683808
+Toomas Erik Anijärv, & Rory Boyle. (2023). teanijarv/HLR: v0.2.0 (v0.2.0). Zenodo. https://doi.org/10.5281/zenodo.7683808
 ```
-@software{toomas_erik_anijarv_2023_7683809,
+@software{toomas_erik_anijarv_2024_7683808,
   author       = {Toomas Erik Anijärv and
                   Rory Boyle},
   title        = {teanijarv/HLR: v0.2.0},