N.B.: The functionality presented here, was merged into the mia
R-package and is available
as the
mia::importTaxpasta
function from version 1.13.28. Development here is discontinued.
taxpasta2tse provides convenience functions that load taxpasta output
(primarily in BIOM format) into a TreeSummarizedExperiment (TSE) object
with a correctly formatted taxonomic tree.
You can install the development version of taxpasta2tse like so:
devtools::install_github("https://github.com/taxprofiler/taxpasta2tse")This is a basic example which shows you how to solve a common problem:
tse <- taxpasta2tse::load_biom("your-file.biom")- Copyright © 2024, Moritz E. Beber.
- Free software distributed under the Apache Software License 2.0.