From 3852db5f6820c8af2557f4c13d97c810025e7614 Mon Sep 17 00:00:00 2001 From: zietzm Date: Wed, 9 Oct 2024 18:24:05 -0700 Subject: [PATCH] fix: vendor git dependencies --- .gitmodules | 10 ++++++++++ pyproject.toml | 8 ++++---- vendor/indirect-gwas | 1 + vendor/ldsc | 1 + vendor/pymbend | 1 + 5 files changed, 17 insertions(+), 4 deletions(-) create mode 100644 .gitmodules create mode 160000 vendor/indirect-gwas create mode 160000 vendor/ldsc create mode 160000 vendor/pymbend diff --git a/.gitmodules b/.gitmodules new file mode 100644 index 0000000..f6682f8 --- /dev/null +++ b/.gitmodules @@ -0,0 +1,10 @@ +[submodule "vendor/indirect-gwas"] + path = vendor/indirect-gwas + url = https://github.com/tatonetti-lab/indirect-gwas +[submodule "vendor/ldsc"] + path = vendor/ldsc + url = https://github.com/zietzm/ldsc + branch = py3 +[submodule "vendor/pymbend"] + path = vendor/pymbend + url = https://github.com/zietzm/pymbend diff --git a/pyproject.toml b/pyproject.toml index 2d41f56..2590f7c 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -1,6 +1,6 @@ [project] name = "maxgcp" -version = "0.1.3" +version = "0.1.4" description = "Optimized phenotype definitions boost GWAS power" authors = [ {name = "zietzm", email = "michael.zietz@gmail.com"} @@ -51,6 +51,6 @@ dev-dependencies = [ ] [tool.uv.sources] -igwas = { git = "https://github.com/tatonetti-lab/indirect-gwas" } -ldsc = { git = "https://github.com/zietzm/ldsc", branch = "py3" } -pymbend = { git = "https://github.com/zietzm/pymbend" } +igwas = { path = "./vendor/indirect-gwas" } +ldsc = { path = "./vendor/ldsc" } +pymbend = { path = "./vendor/pymbend" } diff --git a/vendor/indirect-gwas b/vendor/indirect-gwas new file mode 160000 index 0000000..6d86b6e --- /dev/null +++ b/vendor/indirect-gwas @@ -0,0 +1 @@ +Subproject commit 6d86b6e2acba457d63344a1c0520fa8a85a3c827 diff --git a/vendor/ldsc b/vendor/ldsc new file mode 160000 index 0000000..0f51f7f --- /dev/null +++ b/vendor/ldsc @@ -0,0 +1 @@ +Subproject commit 0f51f7fe37ecdb8608a124c54753b1bdd2cfb252 diff --git a/vendor/pymbend b/vendor/pymbend new file mode 160000 index 0000000..cc9c670 --- /dev/null +++ b/vendor/pymbend @@ -0,0 +1 @@ +Subproject commit cc9c6703b5d2807ce0ddc04af1156f7a41a16383