Files containing evolved chemical network oscillators written in Antimony systems biology modeling language. Models easily translatable to SBML (https://sbml.org/) with the Antimony software library.
- Web site: https://sys-bio.github.io/OcillatorDatabase/
- Based directly on the work and GitHub repository of Matthew Epshtein: https://github.com/epshteinmatthew/OscillatorDatabase
- Background information on chemical network oscillator generation:
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https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9997760/
Lillian T. Tatka, Wesley Luk, Timothy C. Elston, Joseph L. Hellerstein, Herbert M. Sauro, Cesium: A public database of evolved oscillatory reaction networks, Biosystems, Vol 224, 2023, 104836, ISSN 0303-2647, https://doi.org/10.1016/j.biosystems.2023.104836.
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Algorithms and code used to generate models: https://github.com/sys-bio/evolution
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More information about Antimony:
- Antimony reference: https://tellurium.readthedocs.io/en/latest/antimony.html
- Github repo: https://github.com/sys-bio/antimony