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Installation

Dependencies

You must have

  1. Python3
  2. Docker (in order to run AWS SAM local)

Configure

Configure settings.py

Install & Run

Run start.py

More info

If this is your first time using aws, you'll be prompted for your aws credentials

Files

Stuff used during development

start.py - main program for starting up a local dev environment
deploy_lambda.py - packs up zip for use by SAM
kill.py - opposite of start.py, good for pesky background jobs
settings.py - configuration

Stuff used to deploy to production

deploy_lambda.py

Stuff you need only once (for each developer)

start_bootstrap.py - called by start.py, makes sure AWS is properly installed and configured

Stuff you need only once (for the entire organization)

build_layer.py - creates biopython.zip, the deployment package for a lambda layer containing biopython and reference data from NCBI
ncbi_download.py - gets reference data from NCBI