From 97476afa7742e3c4feba1322a61b351d577d7cac Mon Sep 17 00:00:00 2001 From: Melody Williams <3443303+mellypop@users.noreply.github.com> Date: Fri, 1 Nov 2024 13:57:01 -0500 Subject: [PATCH] Explicitly declare insert columns (#53) Add explicit declaration of insert columns when inserting to bam_tpl_read_group (which replaced bam_tpl_loadable) --- src/main/scripts/add_bam_pair_xenocp.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/main/scripts/add_bam_pair_xenocp.py b/src/main/scripts/add_bam_pair_xenocp.py index c082b41..c046e81 100755 --- a/src/main/scripts/add_bam_pair_xenocp.py +++ b/src/main/scripts/add_bam_pair_xenocp.py @@ -102,7 +102,7 @@ def add_bam_pair_stp(raptr, sample, target, project, subproject, **kwargs): bam_tpl_id_xenocp = raptr.fetch_item_or_fail(query, (stp_id,)) # Associate loadables with new bam_tpl. - query = """insert into bam_tpl_read_group values (%s, %s)""" + query = """insert into bam_tpl_read_group(bam_tpl_id, read_group_id) values (%s, %s)""" for rgid in rg_ids: raptr.execute(query, (bam_tpl_id_xenocp, rgid))