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releasenotes.txt
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v2.4.3 (18 November 2024)
* New module to convert igraph graph objects to/from ALAAMEE internal format
* Added insertEdge() as alias for insertArc() on Digraph so that it can be used consistently for Graph, BipartiteGraph and Digraph objects
* run_sa() and run_ee() functions in estimateALAAMSA and estimateALAAMEE modules respectively to run estimation with supplied Graph (or Digraph or BipartiteGraph) object (which contains attributes, rather than supplying attributes as filenames of attribute data files)
v2.4.2 (12 August 2024)
* Print summaries of NA values by mode in bipartite networks
* Added outcome with NA set to 0 for persons and scale and centre centrality measures in Evtushenko director interlock data example
* Allow Ainitial to be specified in simulation for bipartite networks
* Fixed bug with not passing bipartiteGoFfixedMode in estimateALAAMSA through to simulation function
* Added Seierstad & Opsahl (2011) Norwegian company boards example
* Added St Louis crime data (Decker et al. 1991) example
* Fixed bug with getting random node in mode B in bipartite graphs
* Implemented outputGoFstatsFilename and outputObsStatsFilename parameters in estimateALAAMSA.run_on_network_attr() for gof()
* Implemented new parameters bipartiteFixedMode, outputStatsFilename, outputObsSttatsFilename and labels in gof()
* Scripts to convert SA output to LaTeX now handle Mahalanobis distance from GoF output
* Implemented new change statistics for two-paths with matching or mismatching categorical attributes: changeSamePartnerActivityTwoPath, changeDiffPartnerActivityTwoPath, changeSameIndirectPartnerAttribute, changeDiffIndirectPartnerAttribute, changeAlterBinaryTwoStar1, changeAlterBinaryTwoStar2, changeBpAlterSameTwoStar1, changeBpAlterDiffTwoStar1, changeBpAlterSameTwoStar2, changeBpAlterDiffTwoStar2, changeBpAlterBinaryTwoStar1, changeBpAlterBinaryTwoStar2
* Increased parameter name field with in formatted output in estimateALAAMSA.run_on_network_attr()
* Implemented new --shading (-s) option on plotSimulationDiagnostics.R to plot shaded area on trace plots for 95% interval, which also means using PDF instead of EPS when this option is used
* New and modified scripts for more simulation experiments for revised manuscript, use max. 500 runs
* This is the version used for the journal revision of manuscript arXiv:2404.03116
v2.4.1 (25 March 2024)
* Added GEMSEC Deezer examples (as used in new manuscript Stivala, Wang, & Lomi (2024) "ALAAMEE: Open-source software for fitting autologistic actor attribute models")
* Added scripts to convert multiple EE estimations to LaTeX table and single SA estimation to LaTeX table
v2.4.0 (8 January 2024)
* Implemented BipartiteGWActivity change statistic
* Implemented bipariteFixedMode on simulation
* Added -e (--eiindex) option for Krackhardt & Stern (1988) E-I index on plotALAAMEEsimfit.R
* Added ALAAM examples with badger data from Silk et al. (2017)
* Implemented oO_OsameContagion change statistic
* Implemented distance matrix and ContagionDist and GeographicHomophily change statistics
* Added Hamilton et al. (2020) Tasmanian Devil replication data and TERGM models, and new models for the Tasmanian Devil data using SAOM (RSiena) and ALAAM (ALAAMEE stochastic approximation)
* Added test cases and regression tests for new change statistics
* Added experimental change statistics LogContagion and PowerContagion including high school example models and simulation experiments scripts
* Added Mahalanobis distance to goodness-of-fit, including test cases for Mahalanobis distance computation
* Added add_gof_param_func_list parameter to estimateALAAMSA() to allow user-specified goodness-of-fit statistics