diff --git a/src/__fixtures__/article/journal/elife/30274.json b/src/__fixtures__/article/journal/elife/30274.json index 8f7dafbf8..343b8d3ad 100644 --- a/src/__fixtures__/article/journal/elife/30274.json +++ b/src/__fixtures__/article/journal/elife/30274.json @@ -497,7 +497,10 @@ }, "pageEnd": 291, "pageStart": 288, - "title": "The error of the red cell count" + "title": "The error of the red cell count", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -593,7 +596,10 @@ }, "pageEnd": 253, "pageStart": 249, - "title": "The cost of dichotomization" + "title": "The cost of dichotomization", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -784,7 +790,10 @@ }, "pageEnd": 43201, "pageStart": 43182, - "title": "Integrative omics reveals MYCN as a global suppressor of cellular signalling and enables network-based therapeutic target discovery in neuroblastoma" + "title": "Integrative omics reveals MYCN as a global suppressor of cellular signalling and enables network-based therapeutic target discovery in neuroblastoma", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -1089,7 +1098,10 @@ }, "pageEnd": 331, "pageStart": 328, - "title": "The difference between “significant” and “not significant” is not itself statistically significant" + "title": "The difference between “significant” and “not significant” is not itself statistically significant", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -1163,7 +1175,10 @@ }, "pageEnd": 12554, "pageStart": 12543, - "title": "MYC regulates the non-coding transcriptome" + "title": "MYC regulates the non-coding transcriptome", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -1273,7 +1288,10 @@ }, "pageEnd": 482, "pageStart": 476, - "title": "Variation in RNA expression and genomic DNA content acquired during cell culture" + "title": "Variation in RNA expression and genomic DNA content acquired during cell culture", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -1569,7 +1587,10 @@ }, "pageEnd": 388, "pageStart": 384, - "title": "The spliceosome is a therapeutic vulnerability in MYC-driven cancer" + "title": "The spliceosome is a therapeutic vulnerability in MYC-driven cancer", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -1643,7 +1664,10 @@ }, "pageEnd": 586, "pageStart": 575, - "title": "The costs of using unauthenticated" + "title": "The costs of using unauthenticated", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -1927,7 +1951,10 @@ }, "pageEnd": 739, "pageStart": 733, - "title": "Tackling the widespread and critical impact of batch effects in high-throughput data" + "title": "Tackling the widespread and critical impact of batch effects in high-throughput data", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -2156,7 +2183,10 @@ }, "pageEnd": 67, "pageStart": 56, - "title": "Transcriptional amplification in tumor cells with elevated c-Myc" + "title": "Transcriptional amplification in tumor cells with elevated c-Myc", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -2423,7 +2453,10 @@ }, "pageEnd": 79, "pageStart": 68, - "title": "c-Myc is a universal amplifier of expressed genes in lymphocytes and embryonic stem cells" + "title": "c-Myc is a universal amplifier of expressed genes in lymphocytes and embryonic stem cells", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -2479,7 +2512,10 @@ }, "pageEnd": 563, "pageStart": 560, - "title": "Hemacytometer Cell Count Distributions: Implications of Non-Poisson Behavior" + "title": "Hemacytometer Cell Count Distributions: Implications of Non-Poisson Behavior", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -2541,7 +2577,10 @@ }, "pageEnd": 1107, "pageStart": 1105, - "title": "Erroneous analyses of interactions in neuroscience: a problem of significance" + "title": "Erroneous analyses of interactions in neuroscience: a problem of significance", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -2666,7 +2705,10 @@ }, "pageEnd": 352, "pageStart": 339, - "title": "Single mammalian cells compensate for differences in cellular volume and DNA copy number through independent global transcriptional mechanisms" + "title": "Single mammalian cells compensate for differences in cellular volume and DNA copy number through independent global transcriptional mechanisms", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -2809,7 +2851,10 @@ }, "pageEnd": 793, "pageStart": 787, - "title": "Cell cycle activation by c-myc in a burkitt lymphoma model cell line" + "title": "Cell cycle activation by c-myc in a burkitt lymphoma model cell line", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -2847,7 +2892,10 @@ }, "pageEnd": 667, "pageStart": 655, - "title": "Remarks on zeros and ties in the wilcoxon signed rank procedures" + "title": "Remarks on zeros and ties in the wilcoxon signed rank procedures", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -3120,7 +3168,10 @@ }, "pageEnd": 492, "pageStart": 488, - "title": "Selective transcriptional regulation by Myc in cellular growth control and lymphomagenesis" + "title": "Selective transcriptional regulation by Myc in cellular growth control and lymphomagenesis", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -3236,7 +3287,10 @@ }, "pageEnd": 524, "pageStart": 520, - "title": "Dissection of transcriptional programmes in response to serum and c-Myc in a human B-cell line" + "title": "Dissection of transcriptional programmes in response to serum and c-Myc in a human B-cell line", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -3298,7 +3352,10 @@ }, "pageEnd": 675, "pageStart": 671, - "title": "NIH Image to ImageJ: 25 years of image analysis" + "title": "NIH Image to ImageJ: 25 years of image analysis", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -3405,7 +3462,10 @@ }, "pageEnd": 1258, "pageStart": 1255, - "title": "Control of cell growth by c-Myc in the absence of cell division" + "title": "Control of cell growth by c-Myc in the absence of cell division", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -4212,7 +4272,10 @@ }, "pageEnd": 117, "pageStart": 103, - "title": "Replication in prevention science" + "title": "Replication in prevention science", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -4250,7 +4313,10 @@ }, "pageEnd": 48, "pageStart": 1, - "title": "Conducting Meta-Analyses in R with the metafor Package" + "title": "Conducting Meta-Analyses in R with the metafor Package", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -4457,7 +4523,10 @@ }, "pageEnd": 487, "pageStart": 483, - "title": "Activation and repression by oncogenic MYC shape tumour-specific gene expression profiles" + "title": "Activation and repression by oncogenic MYC shape tumour-specific gene expression profiles", + "meta": { + "publicationType": "journal" + } } ], "title": "Replication Study: Transcriptional amplification in tumor cells with elevated c-Myc", diff --git a/src/__fixtures__/article/journal/elife/50356.json b/src/__fixtures__/article/journal/elife/50356.json index ae8d50248..e67a530db 100644 --- a/src/__fixtures__/article/journal/elife/50356.json +++ b/src/__fixtures__/article/journal/elife/50356.json @@ -378,7 +378,10 @@ }, "pageEnd": 6, "pageStart": 2, - "title": "Medical use of Cannabis and cannabinoids containing products - Regulations in Europe and north america" + "title": "Medical use of Cannabis and cannabinoids containing products - Regulations in Europe and north america", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -635,7 +638,10 @@ }, "pageEnd": 9721, "pageStart": 9716, - "title": "Molecular and preclinical basis to inhibit PGE2 receptors EP2 and EP4 as a novel nonsteroidal therapy for endometriosis" + "title": "Molecular and preclinical basis to inhibit PGE2 receptors EP2 and EP4 as a novel nonsteroidal therapy for endometriosis", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -706,7 +712,10 @@ }, "pageEnd": 11098, "pageStart": 11094, - "title": "Innervation of ectopic endometrium in a rat model of endometriosis" + "title": "Innervation of ectopic endometrium in a rat model of endometriosis", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -858,7 +867,10 @@ }, "pageEnd": 787, "pageStart": 782, - "title": "A chronic low dose of Δ9-tetrahydrocannabinol (THC) restores cognitive function in old mice" + "title": "A chronic low dose of Δ9-tetrahydrocannabinol (THC) restores cognitive function in old mice", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -1054,7 +1066,10 @@ }, "pageEnd": 486, "pageStart": 479, - "title": "Differential role of anandamide and 2-arachidonoylglycerol in memory and anxiety-like responses" + "title": "Differential role of anandamide and 2-arachidonoylglycerol in memory and anxiety-like responses", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -1161,7 +1176,10 @@ }, "pageEnd": 1031, "pageStart": 1021, - "title": "Hippocampal protein kinase C signaling mediates the Short-Term memory impairment induced by Delta9-Tetrahydrocannabinol" + "title": "Hippocampal protein kinase C signaling mediates the Short-Term memory impairment induced by Delta9-Tetrahydrocannabinol", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -1400,7 +1418,10 @@ }, "pageEnd": 806, "pageStart": 788, - "title": "Influence of the anabolic-androgenic steroid nandrolone on cannabinoid dependence" + "title": "Influence of the anabolic-androgenic steroid nandrolone on cannabinoid dependence", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -1534,7 +1555,10 @@ }, "pageEnd": 173, "pageStart": 164, - "title": "Loss of μ opioid receptor signaling in nociceptors, but not microglia, abrogates morphine tolerance without disrupting analgesia" + "title": "Loss of μ opioid receptor signaling in nociceptors, but not microglia, abrogates morphine tolerance without disrupting analgesia", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -1623,7 +1647,10 @@ }, "pageEnd": 281, "pageStart": 276, - "title": "An amygdalar neural ensemble that encodes the unpleasantness of pain" + "title": "An amygdalar neural ensemble that encodes the unpleasantness of pain", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -1712,7 +1739,10 @@ }, "pageEnd": 306, "pageStart": 293, - "title": "Keep off the grass? Cannabis, cognition and addiction" + "title": "Keep off the grass? Cannabis, cognition and addiction", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -1819,7 +1849,10 @@ }, "pageEnd": 2831, "pageStart": 2816, - "title": "Microglial activation underlies cerebellar deficits produced by repeated Cannabis exposure" + "title": "Microglial activation underlies cerebellar deficits produced by repeated Cannabis exposure", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -1891,7 +1924,10 @@ }, "pageEnd": 148, "pageStart": 137, - "title": "Pharmacological characterization of the chronic constriction injury model of neuropathic pain" + "title": "Pharmacological characterization of the chronic constriction injury model of neuropathic pain", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -2106,7 +2142,10 @@ }, "pageEnd": 925, "pageStart": 909, - "title": "Peritoneal endometriosis induces time-related depressive- and anxiety-like alterations in female rats: involvement of hippocampal pro-oxidative and BDNF alterations" + "title": "Peritoneal endometriosis induces time-related depressive- and anxiety-like alterations in female rats: involvement of hippocampal pro-oxidative and BDNF alterations", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -2168,7 +2207,10 @@ }, "pageEnd": 507, "pageStart": 499, - "title": "The hypocretin/orexin receptor-1 as a novel target to modulate cannabinoid reward" + "title": "The hypocretin/orexin receptor-1 as a novel target to modulate cannabinoid reward", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -2212,7 +2254,10 @@ }, "pageEnd": 374, "pageStart": 369, - "title": "An estradiol mitotic rate inhibiting effect in the müllerian epithelium in neonatal mice" + "title": "An estradiol mitotic rate inhibiting effect in the müllerian epithelium in neonatal mice", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -2292,7 +2337,10 @@ }, "pageEnd": 112, "pageStart": 107, - "title": "Quantification of the impact of endometriosis symptoms on health-related quality of life and work productivity" + "title": "Quantification of the impact of endometriosis symptoms on health-related quality of life and work productivity", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -2336,7 +2384,10 @@ }, "pageEnd": 303, "pageStart": 299, - "title": "The effectiveness of laparoscopic excision of endometriosis" + "title": "The effectiveness of laparoscopic excision of endometriosis", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -2437,7 +2488,10 @@ }, "pageEnd": 10, "pageStart": 1, - "title": "EP2 receptor antagonism reduces peripheral and central hyperalgesia in a preclinical mouse model of endometriosis" + "title": "EP2 receptor antagonism reduces peripheral and central hyperalgesia in a preclinical mouse model of endometriosis", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -2517,7 +2571,10 @@ }, "pageEnd": 3302, "pageStart": 3289, - "title": "Cannabidiol modulation of antinociceptive tolerance to Δ9-tetrahydrocannabinol" + "title": "Cannabidiol modulation of antinociceptive tolerance to Δ9-tetrahydrocannabinol", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -2624,7 +2681,10 @@ }, "pageEnd": 1337, "pageStart": 1330, - "title": "Reintoxication: the release of fat-stored Delta(9)-tetrahydrocannabinol (THC) into blood is enhanced by food deprivation or ACTH exposure" + "title": "Reintoxication: the release of fat-stored Delta(9)-tetrahydrocannabinol (THC) into blood is enhanced by food deprivation or ACTH exposure", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -2704,7 +2764,10 @@ }, "pageEnd": 339, "pageStart": 331, - "title": "The influence of endometriosis-related symptoms on work life and work ability: a study of danish endometriosis patients in employment" + "title": "The influence of endometriosis-related symptoms on work life and work ability: a study of danish endometriosis patients in employment", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -2775,7 +2838,10 @@ }, "pageEnd": 1172, "pageStart": 1169, - "title": "Effects of Delta-9-Tetrahydrocannabinol and cannabidiol on Cisplatin-Induced neuropathy in mice" + "title": "Effects of Delta-9-Tetrahydrocannabinol and cannabidiol on Cisplatin-Induced neuropathy in mice", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -2837,7 +2903,10 @@ }, "pageEnd": 19, "pageStart": 9, - "title": "Acute and long-term effects of Δ9-tetrahydrocannabinol on object recognition and anxiety-like activity are age- and strain-dependent in mice" + "title": "Acute and long-term effects of Δ9-tetrahydrocannabinol on object recognition and anxiety-like activity are age- and strain-dependent in mice", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -2935,7 +3004,10 @@ }, "pageEnd": 2841, "pageStart": 2832, - "title": "Single and combined effects of Δ9 -tetrahydrocannabinol and cannabidiol in a mouse model of chemotherapy-induced neuropathic pain" + "title": "Single and combined effects of Δ9 -tetrahydrocannabinol and cannabidiol in a mouse model of chemotherapy-induced neuropathic pain", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -2997,7 +3069,10 @@ }, "pageEnd": 454, "pageStart": 446, - "title": "Highway to hell or magic smoke? The dose-dependence of Δ9-THC in place conditioning paradigms" + "title": "Highway to hell or magic smoke? The dose-dependence of Δ9-THC in place conditioning paradigms", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -3119,7 +3194,10 @@ }, "pageEnd": 2012, "pageStart": 2001, - "title": "Role of the endocannabinoid system in the emotional manifestations of osteoarthritis pain" + "title": "Role of the endocannabinoid system in the emotional manifestations of osteoarthritis pain", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -3190,7 +3268,10 @@ }, "pageEnd": 452, "pageStart": 447, - "title": "Sex differences in antinociceptive response to Δ-9-tetrahydrocannabinol and CP 55,940 in the mouse Formalin test" + "title": "Sex differences in antinociceptive response to Δ-9-tetrahydrocannabinol and CP 55,940 in the mouse Formalin test", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -3315,7 +3396,10 @@ }, "pageEnd": 2970, "pageStart": 2963, - "title": "Antiproliferative effects of cannabinoid agonists on deep infiltrating endometriosis" + "title": "Antiproliferative effects of cannabinoid agonists on deep infiltrating endometriosis", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -3413,7 +3497,10 @@ }, "pageEnd": 359, "pageStart": 349, - "title": "Endometriosis alters brain electrophysiology, gene expression and increases pain sensitization, anxiety, and depression in female mice" + "title": "Endometriosis alters brain electrophysiology, gene expression and increases pain sensitization, anxiety, and depression in female mice", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -3484,7 +3571,10 @@ }, "pageEnd": 1447, "pageStart": 1435, - "title": "Sex-dependent long-term effects of adolescent exposure to THC and/or MDMA on neuroinflammation and serotoninergic and cannabinoid systems in rats" + "title": "Sex-dependent long-term effects of adolescent exposure to THC and/or MDMA on neuroinflammation and serotoninergic and cannabinoid systems in rats", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -3537,7 +3627,10 @@ }, "pageEnd": 19, "pageStart": 12, - "title": "Practical considerations in medical Cannabis administration and dosing" + "title": "Practical considerations in medical Cannabis administration and dosing", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -3608,7 +3701,10 @@ }, "pageEnd": 1438, "pageStart": 1432, - "title": "Physical pain and emotion regulation as the main predictive factors of health-related quality of life in women living with endometriosis" + "title": "Physical pain and emotion regulation as the main predictive factors of health-related quality of life in women living with endometriosis", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -3661,7 +3757,10 @@ }, "pageEnd": 618, "pageStart": 611, - "title": "The importance of pelvic nerve fibers in endometriosis" + "title": "The importance of pelvic nerve fibers in endometriosis", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -3813,7 +3912,10 @@ }, "pageEnd": 836, "pageStart": 827, - "title": "Disruption of frontal θ coherence by Δ9-tetrahydrocannabinol is associated with positive psychotic symptoms" + "title": "Disruption of frontal θ coherence by Δ9-tetrahydrocannabinol is associated with positive psychotic symptoms", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -3893,7 +3995,10 @@ }, "pageEnd": 580, "pageStart": 569, - "title": "Methods for quantifying follicular numbers within the mouse ovary" + "title": "Methods for quantifying follicular numbers within the mouse ovary", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -3940,7 +4045,10 @@ }, "pageEnd": 283, "pageStart": 275, - "title": "Morphometric studies on ovarian follicles and corpora lutea during the oestrous cycle in the mouse" + "title": "Morphometric studies on ovarian follicles and corpora lutea during the oestrous cycle in the mouse", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -4023,7 +4131,10 @@ }, "pageEnd": 1158, "pageStart": 1152, - "title": "Cannabinoid modulation of hippocampal long-term memory is mediated by mTOR signaling" + "title": "Cannabinoid modulation of hippocampal long-term memory is mediated by mTOR signaling", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -4112,7 +4223,10 @@ }, "pageEnd": 1343, "pageStart": 1334, - "title": "Dissociation of the pharmacological effects of THC by mTOR blockade" + "title": "Dissociation of the pharmacological effects of THC by mTOR blockade", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -4159,7 +4273,10 @@ }, "pageEnd": 9, "pageStart": 7, - "title": "The emotional cost of contraception" + "title": "The emotional cost of contraception", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -4239,7 +4356,10 @@ }, "pageEnd": 186, "pageStart": 177, - "title": "Reversal of age-related cognitive impairments in mice by an extremely low dose of tetrahydrocannabinol" + "title": "Reversal of age-related cognitive impairments in mice by an extremely low dose of tetrahydrocannabinol", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -4310,7 +4430,10 @@ }, "pageEnd": 1162, "pageStart": 1154, - "title": "Association of hormonal contraception with depression" + "title": "Association of hormonal contraception with depression", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -4399,7 +4522,10 @@ }, "pageEnd": 2950, "pageStart": 2944, - "title": "Endometrial ability to implant in ectopic sites can be prevented by interleukin-12 in a murine model of endometriosis" + "title": "Endometrial ability to implant in ectopic sites can be prevented by interleukin-12 in a murine model of endometriosis", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -4675,7 +4801,10 @@ }, "pageEnd": 1954, "pageStart": 1932, - "title": "Cannabis and cannabinoids for the treatment of people with chronic noncancer pain conditions: a systematic review and meta-analysis of controlled and observational studies" + "title": "Cannabis and cannabinoids for the treatment of people with chronic noncancer pain conditions: a systematic review and meta-analysis of controlled and observational studies", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -4746,7 +4875,10 @@ }, "pageEnd": 787, "pageStart": 782, - "title": "High density of small nerve fibres in the functional layer of the endometrium in women with endometriosis" + "title": "High density of small nerve fibres in the functional layer of the endometrium in women with endometriosis", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -4802,7 +4934,10 @@ }, "pageEnd": 1604, "pageStart": 1577, - "title": "Effectiveness and tolerability of THC:cbd oromucosal spray as add-on measure in patients with severe chronic pain: analysis of 12-week open-label real-world data provided by the german pain e-Registry]]>" + "title": "Effectiveness and tolerability of THC:cbd oromucosal spray as add-on measure in patients with severe chronic pain: analysis of 12-week open-label real-world data provided by the german pain e-Registry]]>", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -5020,7 +5155,10 @@ }, "pageEnd": 28, "pageStart": 22, - "title": "Sex differences in antinociceptive tolerance to delta-9-tetrahydrocannabinol in the rat" + "title": "Sex differences in antinociceptive tolerance to delta-9-tetrahydrocannabinol in the rat", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -5151,7 +5289,10 @@ }, "pageEnd": 834, "pageStart": 827, - "title": "Rich innervation of deep infiltrating endometriosis" + "title": "Rich innervation of deep infiltrating endometriosis", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -5216,7 +5357,10 @@ }, "pageEnd": 86, "pageStart": 78, - "title": "Decreased basal endogenous opioid levels in diabetic rodents: effects on morphine and delta-9-tetrahydrocannabinoid-induced antinociception" + "title": "Decreased basal endogenous opioid levels in diabetic rodents: effects on morphine and delta-9-tetrahydrocannabinoid-induced antinociception", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -5350,7 +5494,10 @@ }, "pageEnd": 1528, "pageStart": 1518, - "title": "Cognitive impairment in a rat model of neuropathic pain: role of hippocampal microtubule stability" + "title": "Cognitive impairment in a rat model of neuropathic pain: role of hippocampal microtubule stability", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", diff --git a/src/__fixtures__/article/journal/plosone/0229075.json b/src/__fixtures__/article/journal/plosone/0229075.json index 982716466..05c9c526c 100644 --- a/src/__fixtures__/article/journal/plosone/0229075.json +++ b/src/__fixtures__/article/journal/plosone/0229075.json @@ -494,7 +494,10 @@ }, "pageEnd": 34, "pageStart": 7, - "title": "Cancer statistics, 2019" + "title": "Cancer statistics, 2019", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -555,7 +558,10 @@ }, "pageEnd": 52, "pageStart": 843, - "title": "Surveillance after radical or partial nephrectomy for localized renal cell carcinoma and management of recurrent disease" + "title": "Surveillance after radical or partial nephrectomy for localized renal cell carcinoma and management of recurrent disease", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -625,7 +631,10 @@ }, "pageEnd": 91, "pageStart": 482, - "title": "Adjuvant therapy in renal cell carcinoma-past, present, and future" + "title": "Adjuvant therapy in renal cell carcinoma-past, present, and future", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -704,7 +713,10 @@ }, "pageEnd": 104, "pageStart": 2098, - "title": "Adjuvant sunitinib in patients with high-risk renal cell carcinoma: safety, therapy management, and patient-reported outcomes in the S-TRAC trial" + "title": "Adjuvant sunitinib in patients with high-risk renal cell carcinoma: safety, therapy management, and patient-reported outcomes in the S-TRAC trial", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -783,7 +795,10 @@ }, "pageEnd": 31, "pageStart": 123, - "title": "What Survival Benefits are Needed to Make Adjuvant Sorafenib Worthwhile After Resection of Intermediate- or High-Risk Renal Cell Carcinoma? Clinical Investigators' Preferences in the SORCE Trial" + "title": "What Survival Benefits are Needed to Make Adjuvant Sorafenib Worthwhile After Resection of Intermediate- or High-Risk Renal Cell Carcinoma? Clinical Investigators' Preferences in the SORCE Trial", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -862,7 +877,10 @@ }, "pageEnd": 23, "pageStart": 3916, - "title": "Randomized Phase III Trial of Adjuvant Pazopanib Versus Placebo After Nephrectomy in Patients With Localized or Locally Advanced Renal Cell Carcinoma" + "title": "Randomized Phase III Trial of Adjuvant Pazopanib Versus Placebo After Nephrectomy in Patients With Localized or Locally Advanced Renal Cell Carcinoma", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -941,7 +959,10 @@ }, "pageEnd": 8, "pageStart": 2371, - "title": "Axitinib versus placebo as an adjuvant treatment of renal cell carcinoma: results from the phase III, randomized ATLAS trial" + "title": "Axitinib versus placebo as an adjuvant treatment of renal cell carcinoma: results from the phase III, randomized ATLAS trial", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -1011,7 +1032,10 @@ }, "pageEnd": 105, "pageStart": 93, - "title": "The 2016 WHO Classification of Tumours of the Urinary System and Male Genital Organs-Part A: Renal, Penile, and Testicular Tumours" + "title": "The 2016 WHO Classification of Tumours of the Urinary System and Male Genital Organs-Part A: Renal, Penile, and Testicular Tumours", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -1168,7 +1192,10 @@ }, "pageEnd": 45, "pageStart": 135, - "title": "Comprehensive Molecular Characterization of Papillary Renal-Cell Carcinoma" + "title": "Comprehensive Molecular Characterization of Papillary Renal-Cell Carcinoma", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -1373,7 +1400,10 @@ }, "pageEnd": 227, "pageStart": 199, - "title": "MicroRNAs in cancer" + "title": "MicroRNAs in cancer", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -1444,7 +1474,10 @@ }, "pageEnd": 53, "pageStart": 2243, - "title": "Combined label-free quantitative proteomics and microRNA expression analysis of breast cancer unravel molecular differences with clinical implications" + "title": "Combined label-free quantitative proteomics and microRNA expression analysis of breast cancer unravel molecular differences with clinical implications", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -1524,7 +1557,10 @@ }, "pageEnd": 52, "pageStart": 1144, - "title": "MicroRNA expression profiling of peripheral blood samples predicts resistance to first-line sunitinib in advanced renal cell carcinoma patients" + "title": "MicroRNA expression profiling of peripheral blood samples predicts resistance to first-line sunitinib in advanced renal cell carcinoma patients", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -1641,7 +1677,10 @@ }, "pageEnd": 27, "pageStart": 118, - "title": "Adjusting batch effects in microarray expression data using empirical Bayes methods" + "title": "Adjusting batch effects in microarray expression data using empirical Bayes methods", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -1702,7 +1741,10 @@ }, "pageEnd": 118, "pageStart": 91, - "title": "Consensus Clustering: A Resampling-Based Method for Class Discovery and Visualization of Gene Expression Microarray Data" + "title": "Consensus Clustering: A Resampling-Based Method for Class Discovery and Visualization of Gene Expression Microarray Data", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -1781,7 +1823,10 @@ }, "pageEnd": 8, "pageStart": 374, - "title": "TM4: a free, open-source system for microarray data management and analysis" + "title": "TM4: a free, open-source system for microarray data management and analysis", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -1833,7 +1878,10 @@ }, "pageEnd": 21, "pageStart": 5116, - "title": "Significance analysis of microarrays applied to the ionizing radiation response" + "title": "Significance analysis of microarrays applied to the ionizing radiation response", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -1894,7 +1942,10 @@ }, "pageEnd": 47, "pageStart": 839, - "title": "miRWalk—database: prediction of possible miRNA binding sites by \"walking\" the genes of three genomes" + "title": "miRWalk—database: prediction of possible miRNA binding sites by \"walking\" the genes of three genomes", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -2047,7 +2098,10 @@ }, "pageEnd": 53, "pageStart": 2646, - "title": "MicroRNA profile: a promising ancillary tool for accurate renal cell tumour diagnosis" + "title": "MicroRNA profile: a promising ancillary tool for accurate renal cell tumour diagnosis", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -2126,7 +2180,10 @@ }, "pageEnd": 30, "pageStart": 721, - "title": "Accurate molecular classification of kidney cancer subtypes using microRNA signature" + "title": "Accurate molecular classification of kidney cancer subtypes using microRNA signature", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -2187,7 +2244,10 @@ }, "pageEnd": 70, "pageStart": 63, - "title": "Molecular classification of adult renal epithelial neoplasms using microRNA expression and virtual karyotyping" + "title": "Molecular classification of adult renal epithelial neoplasms using microRNA expression and virtual karyotyping", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -2343,7 +2403,10 @@ }, "pageEnd": 63, "pageStart": 12757, - "title": "Elevated microRNA-185 is associated with high vascular endothelial growth factor receptor 2 expression levels and high microvessel density in clear cell renal cell carcinoma" + "title": "Elevated microRNA-185 is associated with high vascular endothelial growth factor receptor 2 expression levels and high microvessel density in clear cell renal cell carcinoma", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -2413,7 +2476,10 @@ }, "pageEnd": 21, "pageStart": 1516, - "title": "MicroRNA-126 regulates endothelial expression of vascular cell adhesion molecule 1" + "title": "MicroRNA-126 regulates endothelial expression of vascular cell adhesion molecule 1", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -2492,7 +2558,10 @@ }, "pageEnd": 84, "pageStart": 272, - "title": "miR-126 regulates angiogenic signaling and vascular integrity" + "title": "miR-126 regulates angiogenic signaling and vascular integrity", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -2571,7 +2640,10 @@ }, "pageEnd": 703, "pageStart": 693, - "title": "Low expression of miR-126 is a prognostic marker for metastatic clear cell renal cell carcinoma" + "title": "Low expression of miR-126 is a prognostic marker for metastatic clear cell renal cell carcinoma", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -2614,7 +2686,10 @@ }, "pageEnd": 26, "pageStart": 1217, - "title": "Regulation of angiogenesis through a microRNA (miR-130a) that down-regulates antiangiogenic homeobox genes GAX and HOXA5" + "title": "Regulation of angiogenesis through a microRNA (miR-130a) that down-regulates antiangiogenic homeobox genes GAX and HOXA5", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -2648,7 +2723,10 @@ }, "pageEnd": 4, "pageStart": 682, - "title": "Adjuvant sunitinib in renal cell carcinoma: from evidence to recommendation" + "title": "Adjuvant sunitinib in renal cell carcinoma: from evidence to recommendation", + "meta": { + "publicationType": "journal" + } } ], "title": "miRNA profiling in renal carcinoma suggest the existence of a group of pro-angionenic tumors in localized clear cell renal carcinoma", diff --git a/src/codecs/jats/__file_snapshots__/06908fc3-73df-1014-bb56-a21daa237ef0.json b/src/codecs/jats/__file_snapshots__/06908fc3-73df-1014-bb56-a21daa237ef0.json index d881ea539..1eb2ee156 100644 --- a/src/codecs/jats/__file_snapshots__/06908fc3-73df-1014-bb56-a21daa237ef0.json +++ b/src/codecs/jats/__file_snapshots__/06908fc3-73df-1014-bb56-a21daa237ef0.json @@ -230,7 +230,10 @@ }, "pageEnd": 9, "pageStart": 21, - "title": "Comparing g: multivariate analysis of genetic variation in multiple populations" + "title": "Comparing g: multivariate analysis of genetic variation in multiple populations", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -333,7 +336,10 @@ }, "pageEnd": 90, "pageStart": 285, - "title": "Chromosome-scale selective sweeps shape caenorhabditis elegans genomic diversity" + "title": "Chromosome-scale selective sweeps shape caenorhabditis elegans genomic diversity", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -382,7 +388,10 @@ }, "pageEnd": 32, "pageStart": 9, - "title": "The adaptive landscape as a conceptual bidge between micro and macroevolution" + "title": "The adaptive landscape as a conceptual bidge between micro and macroevolution", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -456,7 +465,10 @@ }, "pageEnd": 61, "pageStart": 2451, - "title": "Understanding the evolution and stability of the g-matrix" + "title": "Understanding the evolution and stability of the g-matrix", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -501,7 +513,10 @@ }, "pageEnd": 195, "pageStart": 194, - "title": "A brief note on overlapping confidence intervals" + "title": "A brief note on overlapping confidence intervals", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -573,7 +588,10 @@ }, "pageEnd": 359, "pageStart": 347, - "title": "Phenotypic plasticity drives phenological changes in a mediterranean blue tit population" + "title": "Phenotypic plasticity drives phenological changes in a mediterranean blue tit population", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -617,7 +635,10 @@ }, "pageEnd": 2072, "pageStart": 2056, - "title": "The distribution of genetic variance across phenotypic space and the response to selection" + "title": "The distribution of genetic variance across phenotypic space and the response to selection", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -683,7 +704,10 @@ }, "issueNumber": 1 }, - "title": "Bigger is fitter? quantitative genetic decomposition of selection reveals an adaptive evolutionary decline of body mass in a wild rodent population" + "title": "Bigger is fitter? quantitative genetic decomposition of selection reveals an adaptive evolutionary decline of body mass in a wild rodent population", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -745,7 +769,10 @@ }, "issueNumber": 1819 }, - "title": "Evolution of the additive genetic variance-covariance matrix under continuous directional selection on a complex behavioural phenotype" + "title": "Evolution of the additive genetic variance-covariance matrix under continuous directional selection on a complex behavioural phenotype", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -810,7 +837,10 @@ }, "pageEnd": 5, "pageStart": 6730, - "title": "The species, sex, and stage specificity of a caenorhabditis sex pheromone" + "title": "The species, sex, and stage specificity of a caenorhabditis sex pheromone", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -904,7 +934,10 @@ }, "pageEnd": 2821, "pageStart": 2811, - "title": "Partial selfing can reduce genetic loads while maintaining diversity during evolution" + "title": "Partial selfing can reduce genetic loads while maintaining diversity during evolution", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -948,7 +981,10 @@ }, "pageEnd": 56, "pageStart": 142, - "title": "The opportunity for balancing selection in experimental populations of caenorhabditis elegans" + "title": "The opportunity for balancing selection in experimental populations of caenorhabditis elegans", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -993,7 +1029,10 @@ }, "pageEnd": 94, "pageStart": 3381, - "title": "The temporal distribution of directional gradients under selection for an optimum" + "title": "The temporal distribution of directional gradients under selection for an optimum", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -1052,7 +1091,10 @@ }, "issueNumber": 4 }, - "title": "Adaptation, plasticity, and extinction in a changing environment: towards a predictive theory" + "title": "Adaptation, plasticity, and extinction in a changing environment: towards a predictive theory", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -1106,7 +1148,10 @@ }, "pageEnd": 32, "pageStart": 2319, - "title": "Estimating the variation, autocorrelation, and environmental sensitivity of phenotypic selection" + "title": "Estimating the variation, autocorrelation, and environmental sensitivity of phenotypic selection", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -1177,7 +1222,10 @@ }, "pageEnd": 423, "pageStart": 420, - "title": "Rapid evolution in salmon life history induced by direct and indirect effects of fishing" + "title": "Rapid evolution in salmon life history induced by direct and indirect effects of fishing", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -1218,7 +1266,10 @@ }, "pageEnd": 501, "pageStart": 451, - "title": "Neuronal substrates of complex behavior in c. elegans" + "title": "Neuronal substrates of complex behavior in c. elegans", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -1275,7 +1326,10 @@ }, "issueNumber": 2 }, - "title": "Adaptation to temporally fluctuating environments by the evolution of maternal effects" + "title": "Adaptation to temporally fluctuating environments by the evolution of maternal effects", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -1320,7 +1374,10 @@ }, "pageEnd": 902, "pageStart": 2891, - "title": "Phenotypic plasticity facilitates mutational variance, genetic variance, and evolvability along the major axis of environmental variation" + "title": "Phenotypic plasticity facilitates mutational variance, genetic variance, and evolvability along the major axis of environmental variation", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -1365,7 +1422,10 @@ }, "pageEnd": 4, "pageStart": 151, - "title": "Constraint to adaptive evolution in response to global warming" + "title": "Constraint to adaptive evolution in response to global warming", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -1471,7 +1531,10 @@ }, "pageEnd": 510, "pageStart": 1497, - "title": "The importance of cgmp signaling in sensory cilia for body size regulation in caenorhabditis elegans" + "title": "The importance of cgmp signaling in sensory cilia for body size regulation in caenorhabditis elegans", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -1524,7 +1587,10 @@ }, "pageEnd": 102, "pageStart": 1091, - "title": "Regulation of body size and behavioral state of c. elegans by sensory perception and the egl-4 cgmp-dependent protein kinase" + "title": "Regulation of body size and behavioral state of c. elegans by sensory perception and the egl-4 cgmp-dependent protein kinase", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -1599,7 +1665,10 @@ "type": "Periodical", "name": "Nature" }, - "title": "Non-adaptive plasticity potentiates rapid adaptive evolution of gene expression in nature" + "title": "Non-adaptive plasticity potentiates rapid adaptive evolution of gene expression in nature", + "meta": { + "publicationType": "other" + } }, { "type": "Article", @@ -1664,7 +1733,10 @@ }, "pageEnd": 407, "pageStart": 394, - "title": "Adaptive versus nonadaptive phenotypic plasticity and the potential for contemporary adaptation in new environments" + "title": "Adaptive versus nonadaptive phenotypic plasticity and the potential for contemporary adaptation in new environments", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -1703,7 +1775,10 @@ }, "pageEnd": 207, "pageStart": 201, - "title": "When does evolution by natural selection prevent extinction?" + "title": "When does evolution by natural selection prevent extinction?", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -1746,7 +1821,10 @@ }, "pageEnd": 29, "pageStart": "E218", - "title": "Demographic and genetic constraints on evolution" + "title": "Demographic and genetic constraints on evolution", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -1791,7 +1869,10 @@ }, "pageEnd": 98, "pageStart": 581, - "title": "The spandrels of san marco and the panglossian paradigm: a critique of the adaptationist programme" + "title": "The spandrels of san marco and the panglossian paradigm: a critique of the adaptationist programme", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -1881,7 +1962,10 @@ }, "volumeNumber": 14 }, - "title": "Slower environmental change hinders adaptation from standing genetic variation" + "title": "Slower environmental change hinders adaptation from standing genetic variation", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -1915,7 +1999,10 @@ }, "pageEnd": 22, "pageStart": 1, - "title": "Mcmc methods for multi-response generalized linear mixed models: The mcmcglmm r package" + "title": "Mcmc methods for multi-response generalized linear mixed models: The mcmcglmm r package", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -1960,7 +2047,10 @@ }, "pageEnd": 500, "pageStart": 483, - "title": "Solving the paradox of stasis: squashed stabilizing selection and the limits of detection" + "title": "Solving the paradox of stasis: squashed stabilizing selection and the limits of detection", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -2003,7 +2093,10 @@ }, "pageEnd": 612, "pageStart": 604, - "title": "Genetic gene expression changes during environmental adaptations tend to reverse plastic changes even after the correction for statistical nonindependence" + "title": "Genetic gene expression changes during environmental adaptations tend to reverse plastic changes even after the correction for statistical nonindependence", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -2064,7 +2157,10 @@ }, "pageEnd": 34, "pageStart": 3, - "title": "Measurement and meaning in biology" + "title": "Measurement and meaning in biology", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -2126,7 +2222,10 @@ }, "pageEnd": 475, "pageStart": 464, - "title": "Natural selection mediated by seasonal time constraints increases the alignment between evolvability and developmental plasticity" + "title": "Natural selection mediated by seasonal time constraints increases the alignment between evolvability and developmental plasticity", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -2175,7 +2274,10 @@ }, "pageEnd": 1654, "pageStart": 1639, - "title": "Evolution and stability of the g matrix in an adaptive landscape with a moving optimum" + "title": "Evolution and stability of the g matrix in an adaptive landscape with a moving optimum", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -2229,7 +2331,10 @@ }, "pageEnd": 745, "pageStart": 727, - "title": "The mutation matrix and the evolution of evolvability" + "title": "The mutation matrix and the evolution of evolvability", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -2278,7 +2383,10 @@ "volumeNumber": 5 }, "pageStart": 3709, - "title": "Epistasis and natural selection shape the mutational architecture of complex traits" + "title": "Epistasis and natural selection shape the mutational architecture of complex traits", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -2322,7 +2430,10 @@ }, "pageEnd": 3953, "pageStart": 3938, - "title": "Restoring ancestral phenotypes is a general pattern in gene expression evolution during adaptation to new environments in tribolium castaneum" + "title": "Restoring ancestral phenotypes is a general pattern in gene expression evolution during adaptation to new environments in tribolium castaneum", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -2397,7 +2508,10 @@ }, "pageEnd": 1685, "pageStart": 1683, - "title": "Antler size in red deer: heritability and selection but no evolution" + "title": "Antler size in red deer: heritability and selection but no evolution", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -2427,7 +2541,10 @@ }, "pageEnd": 416, "pageStart": 402, - "title": "Quantitative genetic analysis of multivariate evolution, applied to brain: body size allometry" + "title": "Quantitative genetic analysis of multivariate evolution, applied to brain: body size allometry", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -2461,7 +2578,10 @@ }, "pageEnd": 15, "pageStart": 203, - "title": "The genetic covariance between characters maintained by pleiotropic mutations" + "title": "The genetic covariance between characters maintained by pleiotropic mutations", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -2495,7 +2615,10 @@ }, "pageEnd": 46, "pageStart": 1435, - "title": "Adaptation to an extraordinary environment by evolution of phenotypic plasticity and genetic assimilation" + "title": "Adaptation to an extraordinary environment by evolution of phenotypic plasticity and genetic assimilation", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -2535,7 +2658,10 @@ }, "pageEnd": 1226, "pageStart": 1210, - "title": "On the measurement of selection on correlated characters" + "title": "On the measurement of selection on correlated characters", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -2560,7 +2686,10 @@ "type": "Periodical", "name": "R package version 1.7.1-1" }, - "title": "emmeans: Estimated Marginal Means, aka Least-Squares Means" + "title": "emmeans: Estimated Marginal Means, aka Least-Squares Means", + "meta": { + "publicationType": "other" + } }, { "type": "Article", @@ -2631,7 +2760,10 @@ }, "pageEnd": 34, "pageStart": 7427, - "title": "Mate searching in caenorhabditis elegans: a genetic model for sex drive in a simple invertebrate" + "title": "Mate searching in caenorhabditis elegans: a genetic model for sex drive in a simple invertebrate", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -2668,7 +2800,10 @@ }, "name": "Sinauer Associates, Inc" }, - "title": "Genetics and Analysis of Quantitative Traits" + "title": "Genetics and Analysis of Quantitative Traits", + "meta": { + "publicationType": "book" + } }, { "type": "Article", @@ -2726,7 +2861,10 @@ "type": "Periodical", "name": "bioRxiv" }, - "title": "Variation in mutational (co)variances" + "title": "Variation in mutational (co)variances", + "meta": { + "publicationType": "other" + } }, { "type": "Article", @@ -2797,7 +2935,10 @@ "name": "bioRxiv" }, "pageStart": 778282, - "title": "Phenotypic stasis with genetic divergence" + "title": "Phenotypic stasis with genetic divergence", + "meta": { + "publicationType": "other" + } }, { "type": "Article", @@ -2849,7 +2990,10 @@ }, "pageEnd": 2440, "pageStart": 2429, - "title": "The evolution of phenotypic plasticity in response to temperature stress" + "title": "The evolution of phenotypic plasticity in response to temperature stress", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -2897,7 +3041,10 @@ }, "pageEnd": 1274, "pageStart": 1255, - "title": "Catch me if you can: adaptation from standing genetic variation to a moving phenotypic optimum" + "title": "Catch me if you can: adaptation from standing genetic variation to a moving phenotypic optimum", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -2932,7 +3079,10 @@ }, "pageEnd": 66, "pageStart": 2050, - "title": "Evolutionary quantitative genetics of nonlinear developmental systems" + "title": "Evolutionary quantitative genetics of nonlinear developmental systems", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -2976,7 +3126,10 @@ }, "pageEnd": 402, "pageStart": 396, - "title": "Analogues of the fundamental and secondary theorems of selection, assuming a log-normal distribution of expected fitness" + "title": "Analogues of the fundamental and secondary theorems of selection, assuming a log-normal distribution of expected fitness", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -3031,7 +3184,10 @@ }, "pageEnd": 88, "pageStart": 2277, - "title": "The danger of applying the breeder’s equation in observational studies of natural populations" + "title": "The danger of applying the breeder’s equation in observational studies of natural populations", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -3115,7 +3271,10 @@ }, "pageEnd": 2410, "pageStart": 2399, - "title": "The prediction of adaptive evolution: empirical application of the secondary theorem of selection and comparison with the breeder’s equation" + "title": "The prediction of adaptive evolution: empirical application of the secondary theorem of selection and comparison with the breeder’s equation", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -3168,7 +3327,10 @@ }, "pageEnd": 13461, "pageStart": 13452, - "title": "Plastic responses to novel environments are biased towards phenotype dimensions with high additive genetic variation" + "title": "Plastic responses to novel environments are biased towards phenotype dimensions with high additive genetic variation", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -3313,7 +3475,10 @@ }, "pageEnd": 1685, "pageStart": 1663, - "title": "Polygenicity and epistasis underlie fitness-proximal traits in the caenorhabditis elegans multiparental experimental evolution (cemee) panel" + "title": "Polygenicity and epistasis underlie fitness-proximal traits in the caenorhabditis elegans multiparental experimental evolution (cemee) panel", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -3397,7 +3562,10 @@ }, "pageEnd": 467, "pageStart": 459, - "title": "Phenotypic plasticity’s impacts on diversification and speciation" + "title": "Phenotypic plasticity’s impacts on diversification and speciation", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -3434,7 +3602,10 @@ }, "name": "Oxford University Press" }, - "title": "Evolution of Genetic Variance-Covariance Structure" + "title": "Evolution of Genetic Variance-Covariance Structure", + "meta": { + "publicationType": "book" + } }, { "type": "Article", @@ -3484,7 +3655,10 @@ }, "pageEnd": 1145, "pageStart": 1137, - "title": "Inbreeding changes the shape of the genetic covariance matrix in drosophila melanogaster" + "title": "Inbreeding changes the shape of the genetic covariance matrix in drosophila melanogaster", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -3529,7 +3703,10 @@ }, "pageEnd": 1222, "pageStart": 1209, - "title": "Visualizing multivariate selection" + "title": "Visualizing multivariate selection", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -3604,7 +3781,10 @@ }, "pageEnd": 2369, "pageStart": 2357, - "title": "Complex heterochrony underlies the evolution of caenorhabditis elegans hermaphrodite sex allocation" + "title": "Complex heterochrony underlies the evolution of caenorhabditis elegans hermaphrodite sex allocation", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -3638,7 +3818,10 @@ }, "pageEnd": 140, "pageStart": 129, - "title": "Fisher’s ‘fundamental theorem’ made clear" + "title": "Fisher’s ‘fundamental theorem’ made clear", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -3692,7 +3875,10 @@ }, "pageEnd": 40, "pageStart": 1433, - "title": "The role of phenotypic plasticity in driving genetic evolution" + "title": "The role of phenotypic plasticity in driving genetic evolution", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -3751,7 +3937,10 @@ "type": "Periodical", "name": "Ecology Letters, page" }, - "title": "How differing modes of non-genetic inheritance affect population viability in fluctuating environments" + "title": "How differing modes of non-genetic inheritance affect population viability in fluctuating environments", + "meta": { + "publicationType": "other" + } }, { "type": "Article", @@ -3794,7 +3983,10 @@ }, "pageEnd": "E000", "pageStart": "E000", - "title": "What kind of maternal effects are selected for in fluctuating environments?" + "title": "What kind of maternal effects are selected for in fluctuating environments?", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -3829,7 +4021,10 @@ }, "pageEnd": 626, "pageStart": 616, - "title": "The measurement of selection on quantitative traits: biases due to environmental covariances between traits and fitness" + "title": "The measurement of selection on quantitative traits: biases due to environmental covariances between traits and fitness", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -3859,7 +4054,10 @@ }, "name": "Syracuse University Press" }, - "title": "The spectrum of genetic variation" + "title": "The spectrum of genetic variation", + "meta": { + "publicationType": "book" + } }, { "type": "Article", @@ -3913,7 +4111,10 @@ }, "pageEnd": 6, "pageStart": 372, - "title": "Selection at linked sites shapes heritable phenotypic variation in c. elegans" + "title": "Selection at linked sites shapes heritable phenotypic variation in c. elegans", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -3947,7 +4148,10 @@ }, "pageEnd": 1774, "pageStart": 1766, - "title": "Adaptive radiaation along genetic lines of least resistance" + "title": "Adaptive radiaation along genetic lines of least resistance", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -3986,7 +4190,10 @@ }, "pageEnd": 493, "pageStart": 461, - "title": "Thinking about the evolution of complex traits in the era of genome-wide association studies" + "title": "Thinking about the evolution of complex traits in the era of genome-wide association studies", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -4044,7 +4251,10 @@ }, "pageEnd": 1267, "pageStart": 1260, - "title": "Changes in genetic variances and covariances: G whiz!" + "title": "Changes in genetic variances and covariances: G whiz!", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -4119,7 +4329,10 @@ }, "pageEnd": 982, "pageStart": 969, - "title": "Environmental and evolutionary drivers of the modular gene regulatory network underlying phenotypic plasticity for stress resistance in the nematode ¡em¿caenorhabditis remanei¡/em¿" + "title": "Environmental and evolutionary drivers of the modular gene regulatory network underlying phenotypic plasticity for stress resistance in the nematode ¡em¿caenorhabditis remanei¡/em¿", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -4138,7 +4351,10 @@ "type": "Periodical", "name": "R package version 2.18.2" }, - "title": "RStan: the R interface to Stan" + "title": "RStan: the R interface to Stan", + "meta": { + "publicationType": "other" + } }, { "type": "Article", @@ -4186,7 +4402,10 @@ }, "pageEnd": 327, "pageStart": 320, - "title": "Comparative quantitative genetics: evolution of the g matrix" + "title": "Comparative quantitative genetics: evolution of the g matrix", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -4214,7 +4433,10 @@ }, "name": "Oxford University Press" }, - "title": "Maintenance of C. elegans" + "title": "Maintenance of C. elegans", + "meta": { + "publicationType": "book" + } }, { "type": "Article", @@ -4269,7 +4491,10 @@ }, "pageEnd": 96, "pageStart": 1188, - "title": "Estimating uncertainty in multivariate responses to selection" + "title": "Estimating uncertainty in multivariate responses to selection", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -4409,7 +4634,10 @@ }, "pageEnd": 573, "pageStart": 562, - "title": "Correlational selection in the age of genomics" + "title": "Correlational selection in the age of genomics", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -4474,7 +4702,10 @@ }, "pageEnd": 8, "pageStart": 592, - "title": "High-throughput behavioral analysis in c. elegans" + "title": "High-throughput behavioral analysis in c. elegans", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -4550,7 +4781,10 @@ }, "issueNumber": 4 }, - "title": "Evolution of outcrossing in experimental populations of Caenorhabditis elegans" + "title": "Evolution of outcrossing in experimental populations of Caenorhabditis elegans", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -4611,7 +4845,10 @@ }, "pageEnd": 716, "pageStart": 691, - "title": "Experimental evolution with caernohabditis nematodes" + "title": "Experimental evolution with caernohabditis nematodes", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -4672,7 +4909,10 @@ "issueNumber": 1 }, "pageStart": 93, - "title": "Reproductive assurance drives transitions to self-fertilization in experimental caenorhabditis elegans" + "title": "Reproductive assurance drives transitions to self-fertilization in experimental caenorhabditis elegans", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -4719,7 +4959,10 @@ }, "pageEnd": 522, "pageStart": 505, - "title": "Genotype-environment interaction and the evolution of phenotypic plasticity" + "title": "Genotype-environment interaction and the evolution of phenotypic plasticity", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -4756,7 +4999,10 @@ }, "name": "Sinauer Associates, Inc" }, - "title": "Evolution and Selection of Quantitative Traits" + "title": "Evolution and Selection of Quantitative Traits", + "meta": { + "publicationType": "book" + } }, { "type": "Article", @@ -4820,7 +5066,10 @@ }, "pageEnd": "E128", "pageStart": "E108", - "title": "Evolution of genetic variance during adaptive radiation" + "title": "Evolution of genetic variance during adaptive radiation", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -4874,7 +5123,10 @@ }, "pageEnd": 75, "pageStart": 1968, - "title": "Persistence of changes in the genetic covariance matrix after a bottleneck" + "title": "Persistence of changes in the genetic covariance matrix after a bottleneck", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -4914,7 +5166,10 @@ }, "pageEnd": 26, "pageStart": 117, - "title": "C. elegans locomotion: small circuits, complex functions" + "title": "C. elegans locomotion: small circuits, complex functions", + "meta": { + "publicationType": "journal" + } } ], "title": "Selection and the direction of phenotypic evolution", diff --git a/src/codecs/jats/__file_snapshots__/48c60452-6c66-1014-adf9-c7b61873ecd3.json b/src/codecs/jats/__file_snapshots__/48c60452-6c66-1014-adf9-c7b61873ecd3.json index 628e9fbb0..22646f3d4 100644 --- a/src/codecs/jats/__file_snapshots__/48c60452-6c66-1014-adf9-c7b61873ecd3.json +++ b/src/codecs/jats/__file_snapshots__/48c60452-6c66-1014-adf9-c7b61873ecd3.json @@ -259,7 +259,10 @@ "type": "Periodical", "name": "Circular Statistics (version 0.4-94)" }, - "title": "R package “circular”" + "title": "R package “circular”", + "meta": { + "publicationType": "other" + } }, { "type": "Article", @@ -335,7 +338,10 @@ }, "pageEnd": 734, "pageStart": 728, - "title": "Gongylolepis martiana, an Asteraceae pollinated by bats in the Amazon" + "title": "Gongylolepis martiana, an Asteraceae pollinated by bats in the Amazon", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -418,7 +424,10 @@ }, "pageEnd": 590, "pageStart": 587, - "title": "Circadian regulation of sunflower heliotropism, floral orientation, and pollinator visits" + "title": "Circadian regulation of sunflower heliotropism, floral orientation, and pollinator visits", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -475,7 +484,10 @@ }, "pageEnd": 231, "pageStart": 229, - "title": "Light control of elongation of filament in sunflower (Helianthus annuus L" + "title": "Light control of elongation of filament in sunflower (Helianthus annuus L", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -539,7 +551,10 @@ "volumeNumber": 372 }, "pageStart": 20160256, - "title": "Time is honey: circadian clocks of bees and flowers and how their interactions may influence ecological communities" + "title": "Time is honey: circadian clocks of bees and flowers and how their interactions may influence ecological communities", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -603,7 +618,10 @@ "volumeNumber": 12 }, "pageStart": 776826, - "title": "The Circadian Clock in Lepidoptera" + "title": "The Circadian Clock in Lepidoptera", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -642,7 +660,10 @@ }, "pageEnd": 100, "pageStart": 89, - "title": "Pollination ecology of Bidens pilosa L. (Asteraceae)" + "title": "Pollination ecology of Bidens pilosa L. (Asteraceae)", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -672,7 +693,10 @@ }, "pageEnd": 252, "pageStart": 220, - "title": "Endogene Tagesrhythmik und Photoperiodismus bei Kalanchoë blössfedliana" + "title": "Endogene Tagesrhythmik und Photoperiodismus bei Kalanchoë blössfedliana", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -710,7 +734,10 @@ }, "pageEnd": 254, "pageStart": 242, - "title": "The Hormonal Regulation of Flower Development" + "title": "The Hormonal Regulation of Flower Development", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -829,7 +856,10 @@ }, "pageEnd": 879, "pageStart": 868, - "title": "Flower orientation influences floral temperature, pollinator visits and plant fitness" + "title": "Flower orientation influences floral temperature, pollinator visits and plant fitness", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -876,7 +906,10 @@ }, "pageEnd": 45, "pageStart": 37, - "title": "The foraging activity of honey bees Apis mellifera and non-Apis bees on hybrid sunflowers (Helianthus annuus) and its influence on cross-pollination and seed set" + "title": "The foraging activity of honey bees Apis mellifera and non-Apis bees on hybrid sunflowers (Helianthus annuus) and its influence on cross-pollination and seed set", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -988,7 +1021,10 @@ }, "pageEnd": 633, "pageStart": 630, - "title": "Plant circadian clocks increase photosynthesis, growth, survival, and competitive advantage" + "title": "Plant circadian clocks increase photosynthesis, growth, survival, and competitive advantage", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -1044,7 +1080,10 @@ }, "pageEnd": 83, "pageStart": 979, - "title": "Concordance of the circadian clock with the environment is necessary to maximize fitness in natural populations" + "title": "Concordance of the circadian clock with the environment is necessary to maximize fitness in natural populations", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -1141,7 +1180,10 @@ }, "name": "IAPT" }, - "title": "Classification of Compositae" + "title": "Classification of Compositae", + "meta": { + "publicationType": "book" + } }, { "type": "Article", @@ -1188,7 +1230,10 @@ }, "pageEnd": 610, "pageStart": 598, - "title": "Integrating circadian dynamics with physiological processes in plants" + "title": "Integrating circadian dynamics with physiological processes in plants", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -1262,7 +1307,10 @@ }, "pageEnd": 254, "pageStart": 247, - "title": "The pollination biology of Pseudostifftia kingii H.Rob. (Asteraceae), a rare endemic Brazilian species with uniflorous capitula" + "title": "The pollination biology of Pseudostifftia kingii H.Rob. (Asteraceae), a rare endemic Brazilian species with uniflorous capitula", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -1309,7 +1357,10 @@ }, "pageEnd": 81, "pageStart": 76, - "title": "Circadian clocks and the measurement of daylength in seasonal reproduction" + "title": "Circadian clocks and the measurement of daylength in seasonal reproduction", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -1356,7 +1407,10 @@ }, "pageEnd": 558, "pageStart": 550, - "title": "Photoperiodic control of flowering: not only by coincidence" + "title": "Photoperiodic control of flowering: not only by coincidence", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -1412,7 +1466,10 @@ }, "pageEnd": 66, "pageStart": 59, - "title": "Circadian clock during plant development" + "title": "Circadian clock during plant development", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -1495,7 +1552,10 @@ }, "pageEnd": 2020, "pageStart": 2006, - "title": "Phytochrome mediates the external light signal to repress FT orthologs in photoperiodic flowering of rice" + "title": "Phytochrome mediates the external light signal to repress FT orthologs in photoperiodic flowering of rice", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -1565,7 +1625,10 @@ }, "name": "IAPT" }, - "title": "Evolution of Compositae Flowers" + "title": "Evolution of Compositae Flowers", + "meta": { + "publicationType": "book" + } }, { "type": "Article", @@ -1711,7 +1774,10 @@ }, "pageEnd": 144, "pageStart": 134, - "title": "Habitat-Specific Clock Variation and Its Consequence on Reproductive Fitness" + "title": "Habitat-Specific Clock Variation and Its Consequence on Reproductive Fitness", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -1771,7 +1837,10 @@ }, "name": "Springer International Publishing" }, - "title": "The Clock Keeps on Ticking: Emerging Roles for Circadian Regulation in the Control of Fungal Physiology and Pathogenesis" + "title": "The Clock Keeps on Ticking: Emerging Roles for Circadian Regulation in the Control of Fungal Physiology and Pathogenesis", + "meta": { + "publicationType": "book" + } }, { "type": "Article", @@ -1818,7 +1887,10 @@ }, "pageEnd": 316, "pageStart": 307, - "title": "Developmental morphology and anatomy of the reproductive structures in sunflower (Helianthus annuus): a unified temporal scale" + "title": "Developmental morphology and anatomy of the reproductive structures in sunflower (Helianthus annuus): a unified temporal scale", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -1874,7 +1946,10 @@ }, "pageEnd": 238, "pageStart": 229, - "title": "Histological development of the sunflower fruit pericarp as affected by pre- and early post-anthesis canopy shading" + "title": "Histological development of the sunflower fruit pericarp as affected by pre- and early post-anthesis canopy shading", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -1942,7 +2017,10 @@ "type": "Periodical", "name": "J Exp Bot" }, - "title": "Hormonal influence on photocontrol of the protandry in the genus Helianthus" + "title": "Hormonal influence on photocontrol of the protandry in the genus Helianthus", + "meta": { + "publicationType": "other" + } }, { "type": "Article", @@ -2025,7 +2103,10 @@ }, "pageEnd": 14088, "pageStart": 14083, - "title": "A fully resolved backbone phylogeny reveals numerous dispersals and explosive diversifications throughout the history of Asteraceae" + "title": "A fully resolved backbone phylogeny reveals numerous dispersals and explosive diversifications throughout the history of Asteraceae", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -2072,7 +2153,10 @@ }, "pageEnd": 164, "pageStart": 155, - "title": "Photoperiodic sensitivity of inflorescence initiation and development in sunflower" + "title": "Photoperiodic sensitivity of inflorescence initiation and development in sunflower", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -2109,7 +2193,10 @@ "volumeNumber": 10 }, "pageStart": 811, - "title": "Comprehensive Insight into Gibberellin- and Jasmonate-Mediated Stamen Development" + "title": "Comprehensive Insight into Gibberellin- and Jasmonate-Mediated Stamen Development", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -2145,7 +2232,10 @@ }, "volumeNumber": 8 }, - "title": "The Plant Circadian Oscillator" + "title": "The Plant Circadian Oscillator", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -2312,7 +2402,10 @@ }, "volumeNumber": 4 }, - "title": "Network Discovery Pipeline Elucidates Conserved Time-of-Day–Specific cis-Regulatory Modules" + "title": "Network Discovery Pipeline Elucidates Conserved Time-of-Day–Specific cis-Regulatory Modules", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -2422,7 +2515,10 @@ }, "pageEnd": 1053, "pageStart": 1049, - "title": "Enhanced Fitness Conferred by Naturally Occurring Variation in the Circadian Clock" + "title": "Enhanced Fitness Conferred by Naturally Occurring Variation in the Circadian Clock", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -2505,7 +2601,10 @@ }, "pageEnd": 1373, "pageStart": 1367, - "title": "Circadian Clock Mutation Disrupts Estrous Cyclicity and Maintenance of Pregnancy" + "title": "Circadian Clock Mutation Disrupts Estrous Cyclicity and Maintenance of Pregnancy", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -2552,7 +2651,10 @@ }, "pageEnd": 328, "pageStart": 315, - "title": "Circadian Interactomics: How Research Into Protein-Protein Interactions Beyond the Core Clock Has Influenced the Model of Circadian Timekeeping" + "title": "Circadian Interactomics: How Research Into Protein-Protein Interactions Beyond the Core Clock Has Influenced the Model of Circadian Timekeeping", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -2671,7 +2773,10 @@ }, "pageEnd": 893, "pageStart": 883, - "title": "Circadian Clock in Arabidopsis thaliana Determines Flower Opening Time Early in the Morning and Dominantly Closes Early in the Afternoon" + "title": "Circadian Clock in Arabidopsis thaliana Determines Flower Opening Time Early in the Morning and Dominantly Closes Early in the Afternoon", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -2710,7 +2815,10 @@ }, "pageEnd": 216, "pageStart": 197, - "title": "The Roles of Phenology and Reward Structure in the Pollination Biology of Wild Sunflower (Helianthus annuus L., Asteraceae)" + "title": "The Roles of Phenology and Reward Structure in the Pollination Biology of Wild Sunflower (Helianthus annuus L., Asteraceae)", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -2784,7 +2892,10 @@ }, "pageEnd": 4, "pageStart": 8660, - "title": "Resonating circadian clocks enhance fitness in cyanobacteria" + "title": "Resonating circadian clocks enhance fitness in cyanobacteria", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -2831,7 +2942,10 @@ }, "pageEnd": 12, "pageStart": 1, - "title": "The generative area as the site of floret initiation in the sunflower capitulum and its integration to predict floret number" + "title": "The generative area as the site of floret initiation in the sunflower capitulum and its integration to predict floret number", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -2859,7 +2973,10 @@ "value": "10.3120/0024-9637-56.3.209" } ], - "title": "Systematics, Evolution, and Biogeography of Compositae, Madroño" + "title": "Systematics, Evolution, and Biogeography of Compositae, Madroño", + "meta": { + "publicationType": "other" + } }, { "type": "Article", @@ -2906,7 +3023,10 @@ }, "pageEnd": 294, "pageStart": 261, - "title": "The Entrainment of Circadian Oscillations by Light and Their Role as Photoperiodic Clocks" + "title": "The Entrainment of Circadian Oscillations by Light and Their Role as Photoperiodic Clocks", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -2926,7 +3046,10 @@ }, "pageEnd": 179, "pageStart": 167, - "title": "Observations on Morphological Characters and Flowering Processes in the Sunflower (Helianthus annuus L" + "title": "Observations on Morphological Characters and Flowering Processes in the Sunflower (Helianthus annuus L", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -2973,7 +3096,10 @@ }, "pageEnd": 864, "pageStart": 807, - "title": "Temperature effect on entrainment, phase shifting, and amplitude of circadian clocks and its molecular bases" + "title": "Temperature effect on entrainment, phase shifting, and amplitude of circadian clocks and its molecular bases", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -3020,7 +3146,10 @@ }, "pageEnd": 606, "pageStart": 600, - "title": "The segmentation clock: inherited trait or universal design principle?" + "title": "The segmentation clock: inherited trait or universal design principle?", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -3076,7 +3205,10 @@ }, "pageEnd": 7, "pageStart": 7742, - "title": "Demasking biological oscillators: properties and principles of entrainment exemplified by the Neurospora circadian clock" + "title": "Demasking biological oscillators: properties and principles of entrainment exemplified by the Neurospora circadian clock", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -3132,7 +3264,10 @@ }, "pageEnd": 307, "pageStart": 287, - "title": "Circadian rhythm as a therapeutic target" + "title": "Circadian rhythm as a therapeutic target", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -3188,7 +3323,10 @@ }, "pageEnd": 1349, "pageStart": 1343, - "title": "Circadian Nature of a Rhythm Expressed by an Invertaseless Strain of Neurospora crassa" + "title": "Circadian Nature of a Rhythm Expressed by an Invertaseless Strain of Neurospora crassa", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -3236,7 +3374,10 @@ }, "pageEnd": 5, "pageStart": 671, - "title": "NIH Image to ImageJ: 25 years of image analysis" + "title": "NIH Image to ImageJ: 25 years of image analysis", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -3279,7 +3420,10 @@ }, "pageEnd": 111, "pageStart": 67, - "title": "Anatomy and Morphology of Sunflower" + "title": "Anatomy and Morphology of Sunflower", + "meta": { + "publicationType": "book" + } }, { "type": "Article", @@ -3353,7 +3497,10 @@ }, "pageEnd": 691, "pageStart": 686, - "title": "Natural selection against a circadian clock gene mutation in mice" + "title": "Natural selection against a circadian clock gene mutation in mice", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -3427,7 +3574,10 @@ }, "pageEnd": 510, "pageStart": 498, - "title": "Three psychophilous Asteraceae species with distinct reproductive mechanisms in southeastern Brazil" + "title": "Three psychophilous Asteraceae species with distinct reproductive mechanisms in southeastern Brazil", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -3473,7 +3623,10 @@ "volumeNumber": 63 }, "pageStart": 1790, - "title": "Foraging Strategy of Honeybee Colonies in a Temperate Deciduous Forest" + "title": "Foraging Strategy of Honeybee Colonies in a Temperate Deciduous Forest", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -3556,7 +3709,10 @@ }, "pageEnd": 491, "pageStart": 480, - "title": "Light inputs shape the Arabidopsis circadian system" + "title": "Light inputs shape the Arabidopsis circadian system", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -3800,7 +3956,10 @@ "volumeNumber": 4 }, "pageStart": 1686, - "title": "Welcome to the Tidyverse" + "title": "Welcome to the Tidyverse", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -3860,7 +4019,10 @@ }, "volumeNumber": 147 }, - "title": "The dynamic nature and regulation of the root clock" + "title": "The dynamic nature and regulation of the root clock", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -3907,7 +4069,10 @@ }, "pageEnd": 276, "pageStart": 265, - "title": "Living by the calendar: how plants know when to flower" + "title": "Living by the calendar: how plants know when to flower", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -3991,7 +4156,10 @@ }, "pageEnd": 1066, "pageStart": 1058, - "title": "Silencing Nicotiana attenuata LHY and ZTL alters circadian rhythms in flowers" + "title": "Silencing Nicotiana attenuata LHY and ZTL alters circadian rhythms in flowers", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -4075,7 +4243,10 @@ }, "pageEnd": 189, "pageStart": 180, - "title": "Fitness consequences of altering floral circadian oscillations for Nicotiana attenuata" + "title": "Fitness consequences of altering floral circadian oscillations for Nicotiana attenuata", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -4179,7 +4350,10 @@ }, "volumeNumber": 118 }, - "title": "Phyllotactic patterning of gerbera flower heads" + "title": "Phyllotactic patterning of gerbera flower heads", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -4256,7 +4430,10 @@ }, "volumeNumber": 9 }, - "title": "Strengths and limitations of period estimation methods for circadian data" + "title": "Strengths and limitations of period estimation methods for circadian data", + "meta": { + "publicationType": "journal" + } } ], "title": "The circadian clock controls temporal and spatial patterns of floral development in sunflower", diff --git a/src/codecs/jats/__file_snapshots__/81445f02-6bf5-1014-892a-9f5909cc27c1.json b/src/codecs/jats/__file_snapshots__/81445f02-6bf5-1014-892a-9f5909cc27c1.json index 4d316d9af..40467b139 100644 --- a/src/codecs/jats/__file_snapshots__/81445f02-6bf5-1014-892a-9f5909cc27c1.json +++ b/src/codecs/jats/__file_snapshots__/81445f02-6bf5-1014-892a-9f5909cc27c1.json @@ -468,7 +468,10 @@ "name": "Int J Mol Sci" }, "pageStart": 21, - "title": "The Role of Estrogen Receptors in Cardiovascular Disease" + "title": "The Role of Estrogen Receptors in Cardiovascular Disease", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -521,7 +524,10 @@ }, "pageEnd": 11, "pageStart": 1, - "title": "Iron status in athletic females, a shift in perspective on an old paradigm" + "title": "Iron status in athletic females, a shift in perspective on an old paradigm", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -605,7 +611,10 @@ }, "pageEnd": 1485, "pageStart": 1477, - "title": "Estrogen effects on vascular inflammation are age dependent: role of estrogen receptors" + "title": "Estrogen effects on vascular inflammation are age dependent: role of estrogen receptors", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -698,7 +707,10 @@ }, "pageEnd": 343, "pageStart": 335, - "title": "Protective effects of mitochondrion- targeted peptide SS-31 against hind limb ischemia-reperfusion injury" + "title": "Protective effects of mitochondrion- targeted peptide SS-31 against hind limb ischemia-reperfusion injury", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -808,7 +820,10 @@ "volumeNumber": 10 }, "pageStart": 137, - "title": "Iron accumulation in macrophages promotes the formation of foam cells and development of atherosclerosis" + "title": "Iron accumulation in macrophages promotes the formation of foam cells and development of atherosclerosis", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -915,7 +930,10 @@ "name": "International journal of molecular sciences" }, "pageStart": 21, - "title": "Deferasirox-Dependent Iron Chelation Enhances Mitochondrial Dysfunction and Restores p53 Signaling by Stabilization of p53 Family Members in Leukemic Cells" + "title": "Deferasirox-Dependent Iron Chelation Enhances Mitochondrial Dysfunction and Restores p53 Signaling by Stabilization of p53 Family Members in Leukemic Cells", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -954,7 +972,10 @@ }, "pageEnd": 1093, "pageStart": 1080, - "title": "Strategy for Treatment of Infected Diabetic Foot Ulcers" + "title": "Strategy for Treatment of Infected Diabetic Foot Ulcers", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -1047,7 +1068,10 @@ }, "pageEnd": 1017, "pageStart": 1006, - "title": "Iron-Dependent Regulation of MDM2 Influences p53 Activity and Hepatic Carcinogenesis" + "title": "Iron-Dependent Regulation of MDM2 Influences p53 Activity and Hepatic Carcinogenesis", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -1131,7 +1155,10 @@ }, "pageEnd": 5521, "pageStart": 5513, - "title": "Differential regulation of estrogen receptor alpha turnover and transactivation by Mdm2 and stress-inducing agents" + "title": "Differential regulation of estrogen receptor alpha turnover and transactivation by Mdm2 and stress-inducing agents", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -1242,7 +1269,10 @@ }, "pageEnd": 87, "pageStart": 77, - "title": "Role of direct interaction in BRCA1 inhibition of estrogen receptor activity" + "title": "Role of direct interaction in BRCA1 inhibition of estrogen receptor activity", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -1299,7 +1329,10 @@ }, "pageEnd": 3520, "pageStart": 3513, - "title": "Vascular endothelial estrogen receptor alpha is modulated by estrogen status and related to endothelial function and endothelial nitric oxide synthase in healthy women" + "title": "Vascular endothelial estrogen receptor alpha is modulated by estrogen status and related to endothelial function and endothelial nitric oxide synthase in healthy women", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -1401,7 +1434,10 @@ }, "pageEnd": 720, "pageStart": 706, - "title": "High Glucose Promotes Epithelial- Mesenchymal Transition of Uterus Endometrial Cancer Cells by Increasing ER/GLUT4-Mediated VEGF Secretion" + "title": "High Glucose Promotes Epithelial- Mesenchymal Transition of Uterus Endometrial Cancer Cells by Increasing ER/GLUT4-Mediated VEGF Secretion", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -1467,7 +1503,10 @@ }, "pageEnd": 597, "pageStart": 591, - "title": "Quality-of-life and depressive symptoms in postmenopausal women after receiving hormone therapy: results from the Heart and Estrogen/Progestin Replacement Study (HERS) trial" + "title": "Quality-of-life and depressive symptoms in postmenopausal women after receiving hormone therapy: results from the Heart and Estrogen/Progestin Replacement Study (HERS) trial", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -1515,7 +1554,10 @@ }, "pageEnd": 27, "pageStart": 25, - "title": "Oncoprotein MDM2 is a ubiquitin ligase E3 for tumor suppressor p53" + "title": "Oncoprotein MDM2 is a ubiquitin ligase E3 for tumor suppressor p53", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -1617,7 +1659,10 @@ }, "pageEnd": 403, "pageStart": 398, - "title": "Estrogen regulates iron homeostasis through governing hepatic hepcidin expression via an estrogen response element" + "title": "Estrogen regulates iron homeostasis through governing hepatic hepcidin expression via an estrogen response element", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -1665,7 +1710,10 @@ }, "pageEnd": 460, "pageStart": 458, - "title": "Dancing with sex hormones, could iron contribute to the gender difference in osteoporosis?" + "title": "Dancing with sex hormones, could iron contribute to the gender difference in osteoporosis?", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -1763,7 +1811,10 @@ }, "volumeNumber": 7 }, - "title": "Estrogen regulates hepcidin expression via GPR30-BMP6-dependent signaling in hepatocytes" + "title": "Estrogen regulates hepcidin expression via GPR30-BMP6-dependent signaling in hepatocytes", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -1838,7 +1889,10 @@ }, "pageEnd": 2214, "pageStart": 2199, - "title": "Molecular mechanism of inhibitory aryl hydrocarbon receptor-estrogen receptor/Sp1 cross talk in breast cancer cells" + "title": "Molecular mechanism of inhibitory aryl hydrocarbon receptor-estrogen receptor/Sp1 cross talk in breast cancer cells", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -1939,7 +1993,10 @@ "volumeNumber": 8 }, "pageStart": 5118, - "title": "Iron regulatory protein deficiency compromises mitochondrial function in murine embryonic fibroblasts" + "title": "Iron regulatory protein deficiency compromises mitochondrial function in murine embryonic fibroblasts", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -1969,7 +2026,10 @@ }, "pageEnd": 231, "pageStart": 220, - "title": "Hormone-replacement therapy: current thinking" + "title": "Hormone-replacement therapy: current thinking", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -2017,7 +2077,10 @@ }, "pageEnd": 147, "pageStart": 129, - "title": "Intrinsic and Extrinsic Factors Governing the Transcriptional Regulation of ESR1" + "title": "Intrinsic and Extrinsic Factors Governing the Transcriptional Regulation of ESR1", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -2101,7 +2164,10 @@ }, "pageEnd": 1140, "pageStart": 1128, - "title": "Fibroblast growth factor-2/platelet-derived growth factor enhances atherosclerotic plaque stability" + "title": "Fibroblast growth factor-2/platelet-derived growth factor enhances atherosclerotic plaque stability", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -2212,7 +2278,10 @@ }, "pageEnd": 164, "pageStart": 149, - "title": "Estrogen prevent atherosclerosis by attenuating endothelial cell pyroptosis via activation of estrogen receptor alpha- mediated autophagy" + "title": "Estrogen prevent atherosclerosis by attenuating endothelial cell pyroptosis via activation of estrogen receptor alpha- mediated autophagy", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -2260,7 +2329,10 @@ }, "pageEnd": 721, "pageStart": 709, - "title": "Macrophages in atherosclerosis: a dynamic balance" + "title": "Macrophages in atherosclerosis: a dynamic balance", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -2307,7 +2379,10 @@ "volumeNumber": 203 }, "pageStart": 107387, - "title": "The endothelial mineralocorticoid receptor: Contributions to sex differences in cardiovascular disease" + "title": "The endothelial mineralocorticoid receptor: Contributions to sex differences in cardiovascular disease", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -2337,7 +2412,10 @@ }, "pageEnd": 696, "pageStart": 687, - "title": "Estrogen signaling and cardiovascular disease" + "title": "Estrogen signaling and cardiovascular disease", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -2430,7 +2508,10 @@ }, "pageEnd": 2093, "pageStart": 2090, - "title": "Hepcidin regulates cellular iron efflux by binding to ferroportin and inducing its internalization" + "title": "Hepcidin regulates cellular iron efflux by binding to ferroportin and inducing its internalization", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -2487,7 +2568,10 @@ }, "pageEnd": 4612, "pageStart": 4605, - "title": "Molecular and cellular determinants of estrogen receptor alpha expression" + "title": "Molecular and cellular determinants of estrogen receptor alpha expression", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -2580,7 +2664,10 @@ }, "pageEnd": 942, "pageStart": 934, - "title": "Estrogen contributes to regulating iron metabolism through governing ferroportin signaling via an estrogen response element" + "title": "Estrogen contributes to regulating iron metabolism through governing ferroportin signaling via an estrogen response element", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -2691,7 +2778,10 @@ }, "pageEnd": 16462, "pageStart": 16457, - "title": "Myeloid-specific estrogen receptor alpha deficiency impairs metabolic homeostasis and accelerates atherosclerotic lesion development" + "title": "Myeloid-specific estrogen receptor alpha deficiency impairs metabolic homeostasis and accelerates atherosclerotic lesion development", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -2739,7 +2829,10 @@ }, "pageEnd": 12, "pageStart": 7, - "title": "Oophorectomy, estrogen, and dementia: a 2014 update" + "title": "Oophorectomy, estrogen, and dementia: a 2014 update", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -2850,7 +2943,10 @@ }, "pageEnd": 333, "pageStart": 321, - "title": "Risks and benefits of estrogen plus progestin in healthy postmenopausal women: principal results From the Women’s Health Initiative randomized controlled trial" + "title": "Risks and benefits of estrogen plus progestin in healthy postmenopausal women: principal results From the Women’s Health Initiative randomized controlled trial", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -2952,7 +3048,10 @@ }, "pageEnd": 265, "pageStart": 259, - "title": "MDM2 enhances the function of estrogen receptor alpha in human breast cancer cells" + "title": "MDM2 enhances the function of estrogen receptor alpha in human breast cancer cells", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -2982,7 +3081,10 @@ }, "pageEnd": 1294, "pageStart": 1293, - "title": "Iron and the Sex Difference in Heart Disease Risk" + "title": "Iron and the Sex Difference in Heart Disease Risk", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -3012,7 +3114,10 @@ }, "pageEnd": 194, "pageStart": 190, - "title": "Are menstruating women protected from heart disease because of, or in spite of, estrogen? Relevance to the iron hypothesis" + "title": "Are menstruating women protected from heart disease because of, or in spite of, estrogen? Relevance to the iron hypothesis", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -3051,7 +3156,10 @@ }, "pageEnd": 10, "pageStart": 1, - "title": "Mechanisms that Increase Stability of Estrogen Receptor Alpha in Breast Cancer" + "title": "Mechanisms that Increase Stability of Estrogen Receptor Alpha in Breast Cancer", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -3117,7 +3225,10 @@ }, "pageEnd": 784, "pageStart": 773, - "title": "Estrogen-Mediated Gaseous Signaling Molecules in Cardiovascular Disease" + "title": "Estrogen-Mediated Gaseous Signaling Molecules in Cardiovascular Disease", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -3228,7 +3339,10 @@ }, "pageEnd": 2695, "pageStart": 2681, - "title": "Atherosclerosis is aggravated by iron overload and ameliorated by dietary and pharmacological iron restriction" + "title": "Atherosclerosis is aggravated by iron overload and ameliorated by dietary and pharmacological iron restriction", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -3321,7 +3435,10 @@ }, "pageEnd": 184, "pageStart": 171, - "title": "BioCycle study: design of the longitudinal study of the oxidative stress and hormone variation during the menstrual cycle" + "title": "BioCycle study: design of the longitudinal study of the oxidative stress and hormone variation during the menstrual cycle", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -3395,7 +3512,10 @@ "volumeNumber": 12 }, "pageStart": 254, - "title": "CTRP12 ameliorates atherosclerosis by promoting cholesterol efflux and inhibiting inflammatory response via the miR-155-5p/LXRα pathway" + "title": "CTRP12 ameliorates atherosclerosis by promoting cholesterol efflux and inhibiting inflammatory response via the miR-155-5p/LXRα pathway", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -3469,7 +3589,10 @@ "volumeNumber": 23 }, "pageStart": 1201, - "title": "Iron Together with Lipid Downregulates Protein Levels of Ceruloplasmin in Macrophages Associated with Rapid Foam Cell Formation" + "title": "Iron Together with Lipid Downregulates Protein Levels of Ceruloplasmin in Macrophages Associated with Rapid Foam Cell Formation", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -3525,7 +3648,10 @@ "volumeNumber": 9 }, "pageStart": 641852, - "title": "Relationship Between Autophagy and Metabolic Syndrome Characteristics in the Pathogenesis of Atherosclerosis" + "title": "Relationship Between Autophagy and Metabolic Syndrome Characteristics in the Pathogenesis of Atherosclerosis", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -3591,7 +3717,10 @@ }, "pageEnd": 3178, "pageStart": 3170, - "title": "17beta-Estradiol inhibits iron hormone hepcidin through an estrogen responsive element half-site" + "title": "17beta-Estradiol inhibits iron hormone hepcidin through an estrogen responsive element half-site", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -3639,7 +3768,10 @@ }, "pageEnd": 194, "pageStart": 173, - "title": "Meta-analyses of the effect of hormone treatment on cognitive function in postmenopausal women" + "title": "Meta-analyses of the effect of hormone treatment on cognitive function in postmenopausal women", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -3714,7 +3846,10 @@ }, "pageEnd": 2311, "pageStart": 2301, - "title": "Mdm2 is a target and mediator of IRP2 in cell growth control" + "title": "Mdm2 is a target and mediator of IRP2 in cell growth control", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -3825,7 +3960,10 @@ }, "pageEnd": 2350, "pageStart": 2333, - "title": "CB1 agonism prolongs therapeutic window for hormone replacement in ovariectomized mice" + "title": "CB1 agonism prolongs therapeutic window for hormone replacement in ovariectomized mice", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -3913,7 +4051,10 @@ "name": "Aging" }, "pageStart": 13, - "title": "Melatonin attenuates smoking-induced atherosclerosis by activating the Nrf2 pathway via NLRP3 inflammasomes in endothelial cells" + "title": "Melatonin attenuates smoking-induced atherosclerosis by activating the Nrf2 pathway via NLRP3 inflammasomes in endothelial cells", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -3952,7 +4093,10 @@ }, "pageEnd": 38, "pageStart": 26, - "title": "Links between oestrogen receptor activation and proteolysis: relevance to hormone-regulated cancer therapy" + "title": "Links between oestrogen receptor activation and proteolysis: relevance to hormone-regulated cancer therapy", + "meta": { + "publicationType": "journal" + } } ], "title": "Aging-related iron deposit prevents the benefits of HRT from late postmenopausal atherosclerosis", diff --git a/src/codecs/jats/__file_snapshots__/87253.json b/src/codecs/jats/__file_snapshots__/87253.json index febf25ddb..06d5fed1f 100644 --- a/src/codecs/jats/__file_snapshots__/87253.json +++ b/src/codecs/jats/__file_snapshots__/87253.json @@ -312,7 +312,8 @@ "pageStart": 1, "title": "The functional diversity of Aurora kinases: A comprehensive review", "meta": { - "label": "1." + "label": "1.", + "publicationType": "journal" } }, { @@ -407,7 +408,8 @@ "pageStart": 3917, "title": "Nuclear localisation of Aurora-A: its regulation and significance for Aurora-A functions in cancer", "meta": { - "label": "2." + "label": "2.", + "publicationType": "journal" } }, { @@ -456,7 +458,8 @@ "pageStart": 220134, "title": "Regulating the regulator: a survey of mechanisms from transcription to translation controlling expression of mammalian cell cycle kinase Aurora A", "meta": { - "label": "3." + "label": "3.", + "publicationType": "journal" } }, { @@ -533,7 +536,8 @@ "pageStart": 1, "title": "Targeting AURKA in Cancer: molecular mechanisms and opportunities for Cancer therapy", "meta": { - "label": "4." + "label": "4.", + "publicationType": "journal" } }, { @@ -592,7 +596,8 @@ "pageStart": 1, "title": "Protein synthesis control in cancer: selectivity and therapeutic targeting", "meta": { - "label": "5." + "label": "5.", + "publicationType": "journal" } }, { @@ -721,7 +726,8 @@ "pageStart": 1, "title": "The malignant phenotype in breast cancer is driven by eIf4A1-mediated changes in the translational landscape", "meta": { - "label": "6." + "label": "6.", + "publicationType": "journal" } }, { @@ -780,7 +786,8 @@ "pageStart": 887, "title": "Dysregulating IRES-dependent translation contributes to overexpression of oncogenic Aurora A kinase", "meta": { - "label": "7." + "label": "7.", + "publicationType": "journal" } }, { @@ -909,7 +916,8 @@ "pageStart": 1, "title": "Translational upregulation of Aurora-A by hnRNP Q1 contributes to cell proliferation and tumorigenesis in colorectal cancer", "meta": { - "label": "8." + "label": "8.", + "publicationType": "journal" } }, { @@ -959,7 +967,8 @@ "pageStart": 599, "title": "Alternative cleavage and polyadenylation in health and disease", "meta": { - "label": "9." + "label": "9.", + "publicationType": "journal" } }, { @@ -1063,7 +1072,8 @@ "pageStart": 1145, "title": "A comprehensive analysis of 3’ end sequencing data sets reveals novel polyadenylation signals and the repressive role of heterogeneous ribonucleoprotein C on cleavage and polyadenylation", "meta": { - "label": "10." + "label": "10.", + "publicationType": "journal" } }, { @@ -1176,7 +1186,8 @@ "pageStart": 1173, "title": "A quantitative atlas of polyadenylation in five mammals", "meta": { - "label": "11." + "label": "11.", + "publicationType": "journal" } }, { @@ -1244,7 +1255,8 @@ "pageStart": "D315", "title": "PolyA-DB 3 catalogs cleavage and polyadenylation sites identified by deep sequencing in multiple genomes", "meta": { - "label": "12." + "label": "12.", + "publicationType": "journal" } }, { @@ -1348,7 +1360,8 @@ "pageStart": 9422, "title": "Global changes in processing of mRNA 3′ untranslated regions characterize clinically distinct cancer subtypes", "meta": { - "label": "13." + "label": "13.", + "publicationType": "journal" } }, { @@ -1477,7 +1490,8 @@ "pageStart": 10531, "title": "Dissecting the heterogeneity of the alternative polyadenylation profiles in triple-negative breast cancers", "meta": { - "label": "14." + "label": "14.", + "publicationType": "journal" } }, { @@ -1540,7 +1554,8 @@ }, "title": "Shortening of 3′UTRs correlates with poor prognosis in breast and lung cancer", "meta": { - "label": "15." + "label": "15.", + "publicationType": "journal" } }, { @@ -1669,7 +1684,8 @@ "pageStart": 379, "title": "Comprehensive characterization of alternative polyadenylation in human cancer", "meta": { - "label": "16." + "label": "16.", + "publicationType": "journal" } }, { @@ -1746,7 +1762,8 @@ "pageStart": 1643, "title": "Proliferating cells express mRNAs with shortened 3’ untranslated regions and fewer microRNA target sites", "meta": { - "label": "17." + "label": "17.", + "publicationType": "journal" } }, { @@ -1796,7 +1813,8 @@ "pageStart": 673, "title": "Widespread shortening of 3′UTRs by alternative cleavage and polyadenylation activates oncogenes in cancer cells", "meta": { - "label": "18." + "label": "18.", + "publicationType": "journal" } }, { @@ -1901,7 +1919,8 @@ "pageStart": 412, "title": "CFIm25 links alternative polyadenylation to glioblastoma tumour suppression", "meta": { - "label": "19." + "label": "19.", + "publicationType": "journal" } }, { @@ -1995,7 +2014,8 @@ "pageStart": 5274, "title": "Dynamic analyses of alternative polyadenylation from RNA-seq reveal a 3’-UTR landscape across seven tumour types", "meta": { - "label": "20." + "label": "20.", + "publicationType": "journal" } }, { @@ -2118,7 +2138,8 @@ "pageStart": 1101, "title": "The transcriptional terminator XRN2 and the RNA-binding protein Sam68 link alternative polyadenylation to cell cycle progression in prostate cancer", "meta": { - "label": "21." + "label": "21.", + "publicationType": "journal" } }, { @@ -2204,7 +2225,8 @@ "pageStart": 127, "title": "Widespread intronic polyadenylation inactivates tumour suppressor genes in leukaemia", "meta": { - "label": "22." + "label": "22.", + "publicationType": "journal" } }, { @@ -2333,7 +2355,8 @@ "pageStart": 783, "title": "3′ UTR shortening represses tumor-suppressor genes in trans by disrupting ceRNA crosstalk", "meta": { - "label": "23." + "label": "23.", + "publicationType": "journal" } }, { @@ -2383,7 +2406,8 @@ "pageStart": 592, "title": "MicroRNAs and the cell cycle", "meta": { - "label": "24." + "label": "24.", + "publicationType": "journal" } }, { @@ -2450,7 +2474,8 @@ "pageStart": 608975, "title": "The role of non-coding RNAs in controlling cell cycle related proteins in cancer cells", "meta": { - "label": "25." + "label": "25.", + "publicationType": "journal" } }, { @@ -2518,7 +2543,8 @@ "pageStart": 4306, "title": "MicroRNA-based regulation of Aurora A kinase in breast cancer", "meta": { - "label": "26." + "label": "26.", + "publicationType": "journal" } }, { @@ -2595,7 +2621,8 @@ "pageStart": 395, "title": "MicroRNA-490-3p suppresses hepatocellular carcinoma cell proliferation and migration by targeting the aurora kinase A gene (AURKA)", "meta": { - "label": "27." + "label": "27.", + "publicationType": "journal" } }, { @@ -2672,7 +2699,8 @@ "pageStart": 1, "title": "MiR-26a-5p inhibits cell proliferation and enhances doxorubicin sensitivity in HCC cells via targeting AURKA", "meta": { - "label": "28." + "label": "28.", + "publicationType": "journal" } }, { @@ -2785,7 +2813,8 @@ "pageStart": 20111, "title": "Tanshinones suppress AURKA through up-regulation of miR-32 expression in non-small cell lung cancer", "meta": { - "label": "29." + "label": "29.", + "publicationType": "journal" } }, { @@ -2914,7 +2943,8 @@ "pageStart": 7713, "title": "The let-7 microRNA represses cell proliferation pathways in human cells", "meta": { - "label": "30." + "label": "30.", + "publicationType": "journal" } }, { @@ -2964,7 +2994,8 @@ "pageStart": 77, "title": "Role of let-7 family microRNA in breast cancer", "meta": { - "label": "31." + "label": "31.", + "publicationType": "journal" } }, { @@ -3068,7 +3099,8 @@ "pageStart": 53, "title": "Let-7a-5p inhibits triple-negative breast tumor growth and metastasis through GLUT12-mediated warburg effect", "meta": { - "label": "32." + "label": "32.", + "publicationType": "journal" } }, { @@ -3144,7 +3176,8 @@ "pageStart": 51, "title": "Decreased expression of key tumour suppressor microRNAs is associated with lymph node metastases in triple negative breast cancer", "meta": { - "label": "33." + "label": "33.", + "publicationType": "journal" } }, { @@ -3257,7 +3290,8 @@ "pageStart": 5937, "title": "Novel prognostic and predictive microRNA targets for triple-negative breast cancer", "meta": { - "label": "34." + "label": "34.", + "publicationType": "journal" } }, { @@ -3334,7 +3368,8 @@ "pageStart": 6910, "title": "3’UTR shortening and EGF signaling: Implications for breast cancer", "meta": { - "label": "35." + "label": "35.", + "publicationType": "journal" } }, { @@ -3463,7 +3498,8 @@ "pageStart": 1, "title": "Aurora-A Identifies Early Recurrence and Poor Prognosis and Promises a Potential Therapeutic Target in Triple Negative Breast Cancer", "meta": { - "label": "36." + "label": "36.", + "publicationType": "journal" } }, { @@ -3592,7 +3628,8 @@ "pageStart": 2509, "title": "Aurora-A kinase oncogenic signaling mediates TGF-β-induced triple-negative breast cancer plasticity and chemoresistance", "meta": { - "label": "37." + "label": "37.", + "publicationType": "journal" } }, { @@ -3660,7 +3697,8 @@ "pageStart": 116, "title": "PolyA_DB: A database for mammalian mRNA polyadenylation", "meta": { - "label": "38." + "label": "38.", + "publicationType": "journal" } }, { @@ -3789,7 +3827,8 @@ "pageStart": 374, "title": "TM4: A free, open-source system for microarray data management and analysis", "meta": { - "label": "39." + "label": "39.", + "publicationType": "journal" } }, { @@ -3848,7 +3887,8 @@ "pageStart": 10679, "title": "Estrogen-induced upregulation and 3′-UTR shortening of CDC6", "meta": { - "label": "40." + "label": "40.", + "publicationType": "journal" } }, { @@ -3942,7 +3982,8 @@ "pageStart": 170272, "title": "Constitutive regulation of mitochondrial morphology by Aurora A kinase depends on a predicted cryptic targeting sequence at the N-terminus", "meta": { - "label": "41." + "label": "41.", + "publicationType": "journal" } }, { @@ -3993,7 +4034,8 @@ }, "title": "Advanced methods of microscope control using μManager software", "meta": { - "label": "42." + "label": "42.", + "publicationType": "journal" } }, { @@ -4122,7 +4164,8 @@ "pageStart": 676, "title": "Fiji: An open-source platform for biological-image analysis", "meta": { - "label": "43." + "label": "43.", + "publicationType": "journal" } }, { @@ -4220,7 +4263,8 @@ }, "title": "AURKA destruction is decoupled from its activity at mitotic exit but is essential to suppress interphase activity", "meta": { - "label": "44." + "label": "44.", + "publicationType": "journal" } }, { @@ -4349,7 +4393,8 @@ "pageStart": 611, "title": "The MIQE guidelines: Minimum information for publication of quantitative real-time PCR experiments", "meta": { - "label": "45." + "label": "45.", + "publicationType": "journal" } }, { @@ -4427,7 +4472,8 @@ "pageStart": 1, "title": "CRISPR-Cas9D10A nickase-based genotypic and phenotypic screening to enhance genome editing", "meta": { - "label": "46." + "label": "46.", + "publicationType": "journal" } }, { @@ -4513,7 +4559,8 @@ "pageStart": 1, "title": "An image J plugin for the high throughput image analysis of in vitro scratch wound healing assays", "meta": { - "label": "47." + "label": "47.", + "publicationType": "journal" } }, { @@ -4645,7 +4692,8 @@ }, "title": "A clinically relevant gene signature in triple negative and basal-like breast cancer", "meta": { - "label": "48." + "label": "48.", + "publicationType": "journal" } }, { @@ -4775,7 +4823,8 @@ "pageStart": 1284, "title": "Gene expression in histologically normal epithelium from breast cancer patients and from cancer-free prophylactic mastectomy patients shares a similar profile", "meta": { - "label": "49." + "label": "49.", + "publicationType": "journal" } }, { @@ -4905,7 +4954,8 @@ "pageStart": 1557, "title": "Gene expression abnormalities in histologically normal breast epithelium of breast cancer patients", "meta": { - "label": "50." + "label": "50.", + "publicationType": "journal" } }, { @@ -5028,7 +5078,8 @@ "pageStart": 121, "title": "X chromosomal abnormalities in basal-like human breast cancer", "meta": { - "label": "51." + "label": "51.", + "publicationType": "journal" } }, { @@ -5076,7 +5127,8 @@ "pageStart": 11, "title": "The prognostic role of a gene signature from tumorigenic breast-cancer cells", "meta": { - "label": "52." + "label": "52.", + "publicationType": "journal" } }, { @@ -5174,7 +5226,8 @@ }, "title": "Identification of prognostic molecular features in the reactive stroma of human breast and prostate cancer", "meta": { - "label": "53." + "label": "53.", + "publicationType": "journal" } }, { @@ -5260,7 +5313,8 @@ "pageStart": 1, "title": "Identification of early molecular markers for breast cancer", "meta": { - "label": "54." + "label": "54.", + "publicationType": "journal" } }, { @@ -5346,7 +5400,8 @@ "pageStart": 1567, "title": "Improved monomeric red, orange and yellow fluorescent proteins derived from Discosoma sp. red fluorescent protein", "meta": { - "label": "55." + "label": "55.", + "publicationType": "journal" } }, { @@ -5423,7 +5478,8 @@ "pageStart": 1585, "title": "A variant of yellow fluorescent protein with fast and efficient maturation for cell-biological applications", "meta": { - "label": "56." + "label": "56.", + "publicationType": "journal" } }, { @@ -5482,7 +5538,8 @@ "pageStart": 1413, "title": "Translational control by 5′-untranslated regions of eukaryotic mRNAs", "meta": { - "label": "57." + "label": "57.", + "publicationType": "journal" } }, { @@ -5550,7 +5607,8 @@ "pageStart": 1751, "title": "Coding regions affect mRNA stability in human cells", "meta": { - "label": "58." + "label": "58.", + "publicationType": "journal" } }, { @@ -5636,7 +5694,8 @@ "pageStart": 1077, "title": "Actin remodelling controls proteasome homeostasis upon stress", "meta": { - "label": "59." + "label": "59.", + "publicationType": "journal" } }, { @@ -5677,7 +5736,8 @@ "pageStart": 1074, "title": "The science of puromycin: From studies of ribosome function to applications in biotechnology", "meta": { - "label": "60." + "label": "60.", + "publicationType": "journal" } }, { @@ -5727,7 +5787,8 @@ "pageStart": 1, "title": "Cell-cycle-dependent regulation of translation: new interpretations of old observations in light of new approaches", "meta": { - "label": "61." + "label": "61.", + "publicationType": "journal" } }, { @@ -5813,7 +5874,8 @@ "pageStart": 369, "title": "The proliferation-quiescence decision is controlled by a bifurcation in CDK2 activity at mitotic exit", "meta": { - "label": "62." + "label": "62.", + "publicationType": "journal" } }, { @@ -5908,7 +5970,8 @@ "pageStart": 86, "title": "Parallel measurement of dynamic changes in translation rates in single cells", "meta": { - "label": "63." + "label": "63.", + "publicationType": "journal" } }, { @@ -5976,7 +6039,8 @@ "pageStart": 1, "title": "Regulation of mRNA translation during mitosis", "meta": { - "label": "64." + "label": "64.", + "publicationType": "journal" } }, { @@ -6053,7 +6117,8 @@ "pageStart": 79, "title": "Engineering and characterization of a superfolder green fluorescent protein", "meta": { - "label": "65." + "label": "65.", + "publicationType": "journal" } }, { @@ -6103,7 +6168,8 @@ "pageStart": 421, "title": "Towards a molecular understanding of microRNA-mediated gene silencing", "meta": { - "label": "66." + "label": "66.", + "publicationType": "journal" } }, { @@ -6153,7 +6219,8 @@ "pageStart": "D127", "title": "MiRDB: An online database for prediction of functional microRNA targets", "meta": { - "label": "67." + "label": "67.", + "publicationType": "journal" } }, { @@ -6281,7 +6348,8 @@ "pageStart": 14, "title": "Let-7 microRNA controls invasion-promoting lysosomal changes via the oncogenic transcription factor Myeloid Zinc Finger-1", "meta": { - "label": "68." + "label": "68.", + "publicationType": "journal" } }, { @@ -6367,7 +6435,8 @@ "pageStart": 1, "title": "An extensive program of periodic alternative splicing linked to cell cycle progression", "meta": { - "label": "69." + "label": "69.", + "publicationType": "journal" } }, { @@ -6471,7 +6540,8 @@ "pageStart": 189, "title": "Tumour amplified kinase STK15/BTAK induces centrosome amplification, aneuploidy and transformation", "meta": { - "label": "70." + "label": "70.", + "publicationType": "journal" } }, { @@ -6540,7 +6610,8 @@ "pageStart": 230, "title": "The Aurora-A/TPX2 complex: A novel oncogenic holoenzyme?", "meta": { - "label": "71." + "label": "71.", + "publicationType": "journal" } }, { @@ -6590,7 +6661,8 @@ "pageStart": 1031, "title": "Insights into the non-mitotic functions of Aurora kinase A: more than just cell division", "meta": { - "label": "72." + "label": "72.", + "publicationType": "journal" } }, { @@ -6640,7 +6712,8 @@ "pageStart": 779, "title": "Context-specific regulation and function of mRNA alternative polyadenylation", "meta": { - "label": "73." + "label": "73.", + "publicationType": "journal" } }, { @@ -6744,7 +6817,8 @@ "pageStart": 7231, "title": "Alternative polyadenylation in triple-negative breast tumors allows NRAS and c-JUN to bypass PUMILIO posttranscriptional regulation", "meta": { - "label": "74." + "label": "74.", + "publicationType": "journal" } }, { @@ -6803,7 +6877,8 @@ "pageStart": 1, "title": "Ubiquitin-mediated degradation of Aurora kinases", "meta": { - "label": "75." + "label": "75.", + "publicationType": "journal" } }, { @@ -6862,7 +6937,8 @@ "pageStart": 1108, "title": "Human let-7a miRNA blocks protein production on actively translating polyribosomes", "meta": { - "label": "76." + "label": "76.", + "publicationType": "journal" } }, { @@ -6931,7 +7007,8 @@ "pageStart": 1, "title": "Cotranslational microRNA mediated messenger RNA destabilization", "meta": { - "label": "77." + "label": "77.", + "publicationType": "journal" } }, { @@ -7053,7 +7130,8 @@ "pageStart": 1, "title": "Translation is required for miRNA-dependent decay of endogenous transcripts", "meta": { - "label": "78." + "label": "78.", + "publicationType": "journal" } }, { @@ -7166,7 +7244,8 @@ "pageStart": 1, "title": "Fluorescence activated cell sorting followed by small RNA sequencing reveals stable microRNA expression during cell cycle progression", "meta": { - "label": "79." + "label": "79.", + "publicationType": "journal" } } ], diff --git a/src/codecs/jats/__file_snapshots__/8758d58a-6c3d-1014-87a3-bbc202f7d832.json b/src/codecs/jats/__file_snapshots__/8758d58a-6c3d-1014-87a3-bbc202f7d832.json index 122e05f75..14d4243ee 100644 --- a/src/codecs/jats/__file_snapshots__/8758d58a-6c3d-1014-87a3-bbc202f7d832.json +++ b/src/codecs/jats/__file_snapshots__/8758d58a-6c3d-1014-87a3-bbc202f7d832.json @@ -630,7 +630,8 @@ }, "title": "Genesis of the αβ T-cell receptor", "meta": { - "label": "1." + "label": "1.", + "publicationType": "journal" } }, { @@ -672,7 +673,8 @@ "pageStart": 266, "title": "Janeway’s immunobiology. Garland Science.(2016)", "meta": { - "label": "2." + "label": "2.", + "publicationType": "journal" } }, { @@ -734,7 +736,8 @@ "pageStart": 16161, "title": "Statistical inference of the generation probability of T-cell receptors from sequence repertoires", "meta": { - "label": "3." + "label": "3.", + "publicationType": "journal" } }, { @@ -777,7 +780,8 @@ "pageStart": 547, "title": "Using T Cell Receptor Repertoires to Understand the Principles of Adaptive Immune Recognition", "meta": { - "label": "4." + "label": "4.", + "publicationType": "journal" } }, { @@ -839,7 +843,8 @@ "pageStart": 377, "title": "Positive and negative selection of the T cell repertoire: what thymocytes see (and don’t see)", "meta": { - "label": "5." + "label": "5.", + "publicationType": "journal" } }, { @@ -900,7 +905,8 @@ "pageStart": "E2905", "title": "Asymmetric thymocyte death underlies the CD4:CD8 T-cell ratio in the adaptive immune system", "meta": { - "label": "6." + "label": "6.", + "publicationType": "journal" } }, { @@ -963,7 +969,8 @@ "pageStart": 181, "title": "Revisiting Thymic Positive Selection and the Mature T Cell Repertoire for Antigen", "meta": { - "label": "7." + "label": "7.", + "publicationType": "journal" } }, { @@ -1081,7 +1088,8 @@ "pageStart": 13139, "title": "Diversity and clonal selection in the human T-cell repertoire", "meta": { - "label": "8." + "label": "8.", + "publicationType": "journal" } }, { @@ -1109,7 +1117,8 @@ }, "title": "T-cell antigen receptor genes and T-cell recognition", "meta": { - "label": "9." + "label": "9.", + "publicationType": "other" } }, { @@ -1173,7 +1182,8 @@ "pageStart": 275, "title": "On the Composition of the Preimmune Repertoire of T Cells Specific for Peptide–Major Histocompatibility Complex Ligands", "meta": { - "label": "10." + "label": "10.", + "publicationType": "journal" } }, { @@ -1299,7 +1309,8 @@ "pageStart": 274, "title": "Diversity, functionality, and stability of the T cell repertoire derived in vivo from a single human T cell precursor", "meta": { - "label": "11." + "label": "11.", + "publicationType": "journal" } }, { @@ -1413,7 +1424,8 @@ "pageStart": 540, "title": "BCG vaccination scar associated with better childhood survival in Guinea-Bissau", "meta": { - "label": "12." + "label": "12.", + "publicationType": "journal" } }, { @@ -1502,7 +1514,8 @@ "pageStart": 1206, "title": "Unique influenza A cross-reactive memory CD8 T-cell receptor repertoire has a potential to protect against EBV seroconversion", "meta": { - "label": "13." + "label": "13.", + "publicationType": "journal" } }, { @@ -1546,7 +1559,8 @@ "pageStart": 417, "title": "No one is naive: the significance of heterologous T-cell immunity", "meta": { - "label": "14." + "label": "14.", + "publicationType": "journal" } }, { @@ -1599,7 +1613,8 @@ "pageStart": 99, "title": "Heterogeneous Memory T Cells in Antiviral Immunity and Immunopathology", "meta": { - "label": "15." + "label": "15.", + "publicationType": "journal" } }, { @@ -1672,7 +1687,8 @@ "pageStart": 373, "title": "Virus-Specific CD4+ Memory-Phenotype T Cells Are Abundant in Unexposed Adults", "meta": { - "label": "16." + "label": "16.", + "publicationType": "journal" } }, { @@ -1812,7 +1828,8 @@ "pageStart": 281, "title": "Cytomegalovirus infection enhances the immune response to influenza", "meta": { - "label": "17." + "label": "17.", + "publicationType": "journal" } }, { @@ -2077,7 +2094,8 @@ "pageStart": 1825, "title": "Non-terminally exhausted tumor-resident memory HBV-specific T cell responses correlate with relapse-free survival in hepatocellular carcinoma", "meta": { - "label": "18." + "label": "18.", + "publicationType": "journal" } }, { @@ -2158,7 +2176,8 @@ "pageStart": 169, "title": "T Cell Antigen Receptor Recognition of Antigen-Presenting Molecules", "meta": { - "label": "19." + "label": "19.", + "publicationType": "journal" } }, { @@ -2308,7 +2327,8 @@ "pageStart": 89, "title": "Quantifiable predictive features define epitope-specific T cell receptor repertoires", "meta": { - "label": "20." + "label": "20.", + "publicationType": "journal" } }, { @@ -2409,7 +2429,8 @@ }, "title": "Multiplex Identification of Antigen-Specific T Cell Receptors Using a Combination of Immune Assays and Immune Receptor Sequencing", "meta": { - "label": "21." + "label": "21.", + "publicationType": "journal" } }, { @@ -2559,7 +2580,8 @@ }, "title": "T cell receptor repertoires of mice and humans are clustered in similarity networks around conserved public CDR3 sequences", "meta": { - "label": "22." + "label": "22.", + "publicationType": "journal" } }, { @@ -2665,7 +2687,8 @@ "pageStart": 569, "title": "Sequence and Structural Analyses Reveal Distinct and Highly Diverse Human CD8 + TCR Repertoires to Immunodominant Viral Antigens", "meta": { - "label": "23." + "label": "23.", + "publicationType": "journal" } }, { @@ -2850,7 +2873,8 @@ "pageStart": 94, "title": "Identifying specificity groups in the T cell receptor repertoire", "meta": { - "label": "24." + "label": "24.", + "publicationType": "journal" } }, { @@ -2967,7 +2991,8 @@ "pageStart": 332, "title": "Diversification of the antigen-specific T cell receptor repertoire after varicella zoster vaccination", "meta": { - "label": "25." + "label": "25.", + "publicationType": "journal" } }, { @@ -3047,7 +3072,8 @@ "pageStart": 1461, "title": "On the viability of unsupervised T-cell receptor sequence clustering for epitope preference", "meta": { - "label": "26." + "label": "26.", + "publicationType": "journal" } }, { @@ -3116,7 +3142,8 @@ "pageStart": 2924, "title": "McPAS-TCR: a manually curated catalogue of pathology-associated T cell receptor sequences", "meta": { - "label": "27." + "label": "27.", + "publicationType": "journal" } }, { @@ -3411,7 +3438,8 @@ "pageStart": "D419", "title": "VDJdb: a curated database of T-cell receptor sequences with known antigen specificity", "meta": { - "label": "28." + "label": "28.", + "publicationType": "journal" } }, { @@ -3594,7 +3622,8 @@ }, "title": "Comparison of peptidemajor histocompatibility complex tetramers and dextramers for the identification of antigenspecific T cells", "meta": { - "label": "29." + "label": "29.", + "publicationType": "journal" } }, { @@ -3721,7 +3750,8 @@ "pageStart": 17, "title": "Multiplex T Cell Stimulation Assay Utilizing a T Cell Activation Reporter-Based Detection System", "meta": { - "label": "30." + "label": "30.", + "publicationType": "journal" } }, { @@ -4010,7 +4040,8 @@ }, "title": "Islet-reactive CD8 + T cell frequencies in the pancreas, but not in blood, distinguish type 1 diabetic patients from healthy donors", "meta": { - "label": "31." + "label": "31.", + "publicationType": "journal" } }, { @@ -4133,7 +4164,8 @@ "pageStart": 87, "title": "Structural interplay between germline interactions and adaptive recognition determines the bandwidth of TCR-peptide-MHC cross-reactivity", "meta": { - "label": "32." + "label": "32.", + "publicationType": "journal" } }, { @@ -4253,7 +4285,8 @@ "pageStart": 1073, "title": "Deconstructing the Peptide-MHC Specificity of T Cell Recognition", "meta": { - "label": "33." + "label": "33.", + "publicationType": "journal" } }, { @@ -4286,7 +4319,8 @@ "pageStart": 395, "title": "A very high level of crossreactivity is an essential feature of the T-cell receptor", "meta": { - "label": "34." + "label": "34.", + "publicationType": "journal" } }, { @@ -4425,7 +4459,8 @@ "pageStart": 1168, "title": "A Single Autoimmune T Cell Receptor Recognizes More Than a Million Different Peptides", "meta": { - "label": "35." + "label": "35.", + "publicationType": "journal" } }, { @@ -4575,7 +4610,8 @@ "pageStart": 95, "title": "T Cell Receptor Cross-Reactivity between Similar Foreign and Self Peptides Influences Naive Cell Population Size and Autoimmunity", "meta": { - "label": "36." + "label": "36.", + "publicationType": "journal" } }, { @@ -4619,7 +4655,8 @@ "pageStart": 695, "title": "Molecular mimicry in T cell-mediated autoimmunity: Viral peptides activate human T cell clones specific for myelin basic protein", "meta": { - "label": "37." + "label": "37.", + "publicationType": "journal" } }, { @@ -4679,7 +4716,8 @@ "pageStart": 643, "title": "Mucosal-associated invariant T cells and disease", "meta": { - "label": "38." + "label": "38.", + "publicationType": "journal" } }, { @@ -4731,7 +4769,8 @@ "pageStart": 479, "title": "The Immunology of CD1- and MR1-Restricted T Cells", "meta": { - "label": "39." + "label": "39.", + "publicationType": "journal" } }, { @@ -4765,7 +4804,8 @@ "pageStart": 229, "title": "Neonatal T Cells: A Reinterpretation", "meta": { - "label": "40." + "label": "40.", + "publicationType": "journal" } }, { @@ -4819,7 +4859,8 @@ "pageStart": 499, "title": "Building a T cell compartment: how immune cell development shapes function", "meta": { - "label": "41." + "label": "41.", + "publicationType": "journal" } }, { @@ -5225,7 +5266,8 @@ "pageStart": 586, "title": "Global analysis of shared T cell specificities in human non-small cell lung cancer enables HLA inference and antigen discovery", "meta": { - "label": "42." + "label": "42.", + "publicationType": "journal" } }, { @@ -5479,7 +5521,8 @@ "pageStart": 1264, "title": "HLA-DR15 Molecules Jointly Shape an Autoreactive T Cell Repertoire in Multiple Sclerosis", "meta": { - "label": "43." + "label": "43.", + "publicationType": "journal" } }, { @@ -5582,7 +5625,8 @@ "pageStart": 1016, "title": "T-Scan: A Genome-wide Method for the Systematic Discovery of T Cell Epitopes", "meta": { - "label": "44." + "label": "44.", + "publicationType": "journal" } }, { @@ -5654,7 +5698,8 @@ "pageStart": 1114, "title": "The burgeoning family of unconventional T cells", "meta": { - "label": "45." + "label": "45.", + "publicationType": "journal" } }, { @@ -5691,7 +5736,8 @@ ], "title": "Annu. Rev. Immunol.", "meta": { - "label": "46." + "label": "46.", + "publicationType": "journal" } }, { @@ -5734,7 +5780,8 @@ "pageStart": 13, "title": "Natural Antibodies Bridge Innate and Adaptive Immunity", "meta": { - "label": "47." + "label": "47.", + "publicationType": "journal" } }, { @@ -5813,7 +5860,8 @@ "pageStart": 106, "title": "The survival benefit of measles immunization may not be explained entirely by the prevention of measles disease: a community study from rural Bangladesh", "meta": { - "label": "48." + "label": "48.", + "publicationType": "journal" } }, { @@ -5931,7 +5979,8 @@ "pageStart": "c6495", "title": "Non-specific effects of standard measles vaccine at 4.5 and 9 months of age on childhood mortality: randomised controlled trial", "meta": { - "label": "49." + "label": "49.", + "publicationType": "journal" } }, { @@ -5975,7 +6024,8 @@ "pageStart": 417, "title": "No one is naive: the significance of heterologous T-cell immunity", "meta": { - "label": "50." + "label": "50.", + "publicationType": "journal" } }, { @@ -6009,7 +6059,8 @@ "pageStart": 669, "title": "Why must T cells be cross-reactive?", "meta": { - "label": "51." + "label": "51.", + "publicationType": "journal" } }, { @@ -6060,7 +6111,8 @@ "pageStart": 487, "title": "Human Influenza Virus Infections", "meta": { - "label": "52." + "label": "52.", + "publicationType": "journal" } }, { @@ -6102,7 +6154,8 @@ "pageStart": "S71", "title": "Adaptive immunity in HBV infection", "meta": { - "label": "53." + "label": "53.", + "publicationType": "journal" } }, { @@ -6178,7 +6231,8 @@ }, "title": "The trinity of COVID-19: immunity, inflammation and intervention", "meta": { - "label": "54." + "label": "54.", + "publicationType": "journal" } }, { @@ -6371,7 +6425,8 @@ }, "title": "Benchmarking of T cell receptor repertoire profiling methods reveals large systematic biases", "meta": { - "label": "55." + "label": "55.", + "publicationType": "journal" } }, { @@ -6462,7 +6517,8 @@ "pageStart": 380, "title": "MiXCR: software for comprehensive adaptive immunity profiling", "meta": { - "label": "56." + "label": "56.", + "publicationType": "journal" } }, { @@ -6499,7 +6555,8 @@ "pageStart": 111, "title": "The stringdist package for approximate string matching", "meta": { - "label": "57." + "label": "57.", + "publicationType": "journal" } }, { @@ -6527,7 +6584,8 @@ ], "title": "The igraph software package for complex network research", "meta": { - "label": "58." + "label": "58.", + "publicationType": "other" } }, { @@ -6558,7 +6616,8 @@ }, "title": "ggplot2: elegant graphics for data analysis", "meta": { - "label": "59." + "label": "59.", + "publicationType": "book" } }, { @@ -6591,7 +6650,8 @@ "pageStart": 2498, "title": "Cytoscape: A Software Environment for Integrated Models of Biomolecular Interaction Networks", "meta": { - "label": "60." + "label": "60.", + "publicationType": "journal" } }, { @@ -6616,7 +6676,8 @@ "title": "Rtsne: T-distributed stochastic neighbor embedding using Barnes-Hut implementation", "url": "https://github.com/jkrijthe/Rtsne", "meta": { - "label": "61." + "label": "61.", + "publicationType": "other" } }, { @@ -6657,7 +6718,8 @@ }, "title": "OLGA: fast computation of generation probabilities of B- and T-cell receptor amino acid sequences and motifs", "meta": { - "label": "62." + "label": "62.", + "publicationType": "other" } }, { @@ -6715,7 +6777,8 @@ }, "title": "High-throughput immune repertoire analysis with IGoR", "meta": { - "label": "63." + "label": "63.", + "publicationType": "journal" } } ], diff --git a/src/codecs/jats/__file_snapshots__/c2c3813f-6c98-1014-8ba7-9ee2cd5f4386.json b/src/codecs/jats/__file_snapshots__/c2c3813f-6c98-1014-8ba7-9ee2cd5f4386.json index 65f011e25..b34f2f9f8 100644 --- a/src/codecs/jats/__file_snapshots__/c2c3813f-6c98-1014-8ba7-9ee2cd5f4386.json +++ b/src/codecs/jats/__file_snapshots__/c2c3813f-6c98-1014-8ba7-9ee2cd5f4386.json @@ -719,7 +719,10 @@ }, "pageEnd": 496, "pageStart": 485, - "title": "Development of ProTx-II Analogues as Highly Selective Peptide Blockers of Nav1.7 for the Treatment of Pain" + "title": "Development of ProTx-II Analogues as Highly Selective Peptide Blockers of Nav1.7 for the Treatment of Pain", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -789,7 +792,10 @@ }, "pageEnd": 24, "pageStart": 1, - "title": "The hitchhiker’s guide to the voltage-gated sodium channel galaxy" + "title": "The hitchhiker’s guide to the voltage-gated sodium channel galaxy", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -862,7 +868,10 @@ }, "pageEnd": 2055, "pageStart": 2042, - "title": "Protein Structure Prediction and Design in a Biologically Realistic Implicit Membrane" + "title": "Protein Structure Prediction and Design in a Biologically Realistic Implicit Membrane", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -904,7 +913,10 @@ }, "pageEnd": 1202, "pageStart": 1193, - "title": "Do the potential benefits outweigh the risks? An update on the use of ziconotide in clinical practice" + "title": "Do the potential benefits outweigh the risks? An update on the use of ziconotide in clinical practice", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -975,7 +987,10 @@ }, "pageEnd": 284, "pageStart": 267, - "title": "Cellular and molecular mechanisms of pain" + "title": "Cellular and molecular mechanisms of pain", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -1073,7 +1088,10 @@ }, "pageEnd": 1261, "pageStart": 1250, - "title": "Antinociceptive properties of an isoform-selective inhibitor of Nav1.7 derived from saxitoxin in mouse models of pain" + "title": "Antinociceptive properties of an isoform-selective inhibitor of Nav1.7 derived from saxitoxin in mouse models of pain", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -1174,7 +1192,10 @@ }, "pageEnd": 4763, "pageStart": 4748, - "title": "Protocols for Molecular Modeling with Rosetta3 and RosettaScripts" + "title": "Protocols for Molecular Modeling with Rosetta3 and RosettaScripts", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -1256,7 +1277,10 @@ }, "pageEnd": 1151, "pageStart": 1079, - "title": "The Role of Voltage-Gated Sodium Channels in Pain Signaling" + "title": "The Role of Voltage-Gated Sodium Channels in Pain Signaling", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -1344,7 +1368,10 @@ }, "pageEnd": 42, "pageStart": 21, - "title": "Lacosamide: a review of preclinical properties" + "title": "Lacosamide: a review of preclinical properties", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -1406,7 +1433,10 @@ }, "pageEnd": 678, "pageStart": 663, - "title": "Sodium channel blockers for the treatment of neuropathic pain" + "title": "Sodium channel blockers for the treatment of neuropathic pain", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -1473,7 +1503,10 @@ "volumeNumber": 8 }, "pageStart": 82, - "title": "Expression of Nav1.7 in DRG neurons extends from peripheral terminals in the skin to central preterminal branches and terminals in the dorsal horn" + "title": "Expression of Nav1.7 in DRG neurons extends from peripheral terminals in the skin to central preterminal branches and terminals in the dorsal horn", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -1554,7 +1587,10 @@ }, "pageEnd": 653, "pageStart": 644, - "title": "Multiple sodium channel isoforms and mitogen-activated protein kinases are present in painful human neuromas" + "title": "Multiple sodium channel isoforms and mitogen-activated protein kinases are present in painful human neuromas", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -1606,7 +1642,10 @@ }, "pageEnd": 182, "pageStart": 175, - "title": "Targeting voltage sensors in sodium channels with spider toxins" + "title": "Targeting voltage sensors in sodium channels with spider toxins", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -1671,7 +1710,10 @@ "volumeNumber": 11 }, "pageStart": 100082, - "title": "Small molecule targeting NaV1.7 via inhibition of the CRMP2-Ubc9 interaction reduces and prevents pain chronification in a mouse model of oxaliplatin-induced neuropathic pain" + "title": "Small molecule targeting NaV1.7 via inhibition of the CRMP2-Ubc9 interaction reduces and prevents pain chronification in a mouse model of oxaliplatin-induced neuropathic pain", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -1771,7 +1813,10 @@ }, "pageEnd": 303, "pageStart": 291, - "title": "Identification and Characterization of ProTx-III [mu-TRTX-Tp1a], a New Voltage-Gated Sodium Channel Inhibitor from Venom of the Tarantula Thrixopelma pruriens" + "title": "Identification and Characterization of ProTx-III [mu-TRTX-Tp1a], a New Voltage-Gated Sodium Channel Inhibitor from Venom of the Tarantula Thrixopelma pruriens", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -1827,7 +1872,10 @@ "pageEnd": 409, "pageStart": 397, "title": "International Union of Pharmacology. XLVII. Nomenclature and structure-function relationships of voltage-gated sodium channels", - "url": "http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=16382098" + "url": "http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=16382098", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -1917,7 +1965,10 @@ }, "pageEnd": 12, "pageStart": 4, - "title": "Expression and Role of Voltage-Gated Sodium Channels in Human Dorsal Root Ganglion Neurons with Special Focus on Nav1.7, Species Differences, and Regulation by Paclitaxel" + "title": "Expression and Role of Voltage-Gated Sodium Channels in Human Dorsal Root Ganglion Neurons with Special Focus on Nav1.7, Species Differences, and Regulation by Paclitaxel", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -2007,7 +2058,10 @@ "type": "Periodical", "name": "Science" }, - "title": "Structural basis of alpha-scorpion toxin action on Nav channels" + "title": "Structural basis of alpha-scorpion toxin action on Nav channels", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -2106,7 +2160,10 @@ }, "pageEnd": 898, "pageStart": 894, - "title": "An SCN9A channelopathy causes congenital inability to experience pain" + "title": "An SCN9A channelopathy causes congenital inability to experience pain", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -2169,7 +2226,10 @@ }, "pageEnd": 8236, "pageStart": 8232, - "title": "Electrophysiological properties of mutant Nav1.7 sodium channels in a painful inherited neuropathy" + "title": "Electrophysiological properties of mutant Nav1.7 sodium channels in a painful inherited neuropathy", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -2270,7 +2330,10 @@ }, "pageEnd": 238, "pageStart": 230, - "title": "Effectiveness and Safety of Intrathecal Ziconotide: Interim Analysis of the Patient Registry of Intrathecal Ziconotide Management (PRIZM)" + "title": "Effectiveness and Safety of Intrathecal Ziconotide: Interim Analysis of the Patient Registry of Intrathecal Ziconotide Management (PRIZM)", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -2343,7 +2406,10 @@ }, "pageEnd": 563, "pageStart": 555, - "title": "From genes to pain: Na v 1.7 and human pain disorders" + "title": "From genes to pain: Na v 1.7 and human pain disorders", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -2412,7 +2478,10 @@ }, "pageEnd": 347, "pageStart": 325, - "title": "Sodium channels in normal and pathological pain" + "title": "Sodium channels in normal and pathological pain", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -2484,7 +2553,10 @@ }, "pageEnd": 62, "pageStart": 49, - "title": "The Na(V)1.7 sodium channel: from molecule to man" + "title": "The Na(V)1.7 sodium channel: from molecule to man", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -2527,7 +2599,10 @@ }, "pageEnd": 289, "pageStart": 277, - "title": "Advances in oral peptide therapeutics" + "title": "Advances in oral peptide therapeutics", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -2599,7 +2674,10 @@ }, "pageEnd": 1589, "pageStart": 1581, - "title": "Cutaneous sensory neurons expressing the Mrgprd receptor sense extracellular ATP and are putative nociceptors" + "title": "Cutaneous sensory neurons expressing the Mrgprd receptor sense extracellular ATP and are putative nociceptors", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -2687,7 +2765,10 @@ }, "pageEnd": "E8452", "pageStart": "E8443", - "title": "Hierarchical CRMP2 posttranslational modifications control NaV1.7 function" + "title": "Hierarchical CRMP2 posttranslational modifications control NaV1.7 function", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -2778,7 +2859,10 @@ }, "pageEnd": 866, "pageStart": 862, - "title": "A sodium channel gene SCN9A polymorphism that increases nociceptor excitability" + "title": "A sodium channel gene SCN9A polymorphism that increases nociceptor excitability", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -2878,7 +2962,10 @@ }, "pageEnd": 774, "pageStart": 767, - "title": "SCN9A mutations in paroxysmal extreme pain disorder: allelic variants underlie distinct channel defects and phenotypes" + "title": "SCN9A mutations in paroxysmal extreme pain disorder: allelic variants underlie distinct channel defects and phenotypes", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -2916,7 +3003,10 @@ "type": "Date", "value": "2015" }, - "title": "Protoxin-II variants and methods of use Patent No. US20150099705" + "title": "Protoxin-II variants and methods of use Patent No. US20150099705", + "meta": { + "publicationType": "patent" + } }, { "type": "Article", @@ -3009,7 +3099,10 @@ "volumeNumber": 7 }, "pageStart": 39662, - "title": "Insensitivity to pain induced by a potent selective closed-state Nav1.7 inhibitor" + "title": "Insensitivity to pain induced by a potent selective closed-state Nav1.7 inhibitor", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -3110,7 +3203,10 @@ }, "issueNumber": 9 }, - "title": "Global Nav1.7 knockout mice recapitulate the phenotype of human congenital indifference to pain" + "title": "Global Nav1.7 knockout mice recapitulate the phenotype of human congenital indifference to pain", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -3210,7 +3306,10 @@ }, "pageEnd": 85, "pageStart": 80, - "title": "Treatment of Na(v)1.7-mediated pain in inherited erythromelalgia using a novel sodium channel blocker" + "title": "Treatment of Na(v)1.7-mediated pain in inherited erythromelalgia using a novel sodium channel blocker", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -3270,7 +3369,10 @@ }, "pageEnd": 12, "pageStart": 11, - "title": "Oxaliplatin" + "title": "Oxaliplatin", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -3348,7 +3450,10 @@ }, "pageEnd": 750, "pageStart": 741, - "title": "Distinct repriming and closed-state inactivation kinetics of Nav1.6 and Nav1.7 sodium channels in mouse spinal sensory neurons" + "title": "Distinct repriming and closed-state inactivation kinetics of Nav1.6 and Nav1.7 sodium channels in mouse spinal sensory neurons", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -3401,7 +3506,10 @@ }, "pageEnd": 2145, "pageStart": 2135, - "title": "CHARMM36 all-atom additive protein force field: validation based on comparison to NMR data" + "title": "CHARMM36 all-atom additive protein force field: validation based on comparison to NMR data", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -3461,7 +3569,10 @@ }, "pageEnd": 536, "pageStart": 531, - "title": "Intravenous lidocaine for neuropathic pain: a retrospective analysis of tolerability and efficacy" + "title": "Intravenous lidocaine for neuropathic pain: a retrospective analysis of tolerability and efficacy", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -3561,7 +3672,10 @@ }, "pageEnd": 1253, "pageStart": 1245, - "title": "Tertiary Care Clinical Experience with Intravenous Lidocaine Infusions for the Treatment of Chronic Pain" + "title": "Tertiary Care Clinical Experience with Intravenous Lidocaine Infusions for the Treatment of Chronic Pain", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -3652,7 +3766,10 @@ }, "pageEnd": 92, "pageStart": 87, - "title": "High-performance scalable molecular dynamics simulations of a polarizable force field based on classical Drude oscillators in NAMD" + "title": "High-performance scalable molecular dynamics simulations of a polarizable force field based on classical Drude oscillators in NAMD", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -3722,7 +3839,10 @@ }, "pageEnd": 1865, "pageStart": 1859, - "title": "CHARMM-GUI: a web-based graphical user interface for CHARMM" + "title": "CHARMM-GUI: a web-based graphical user interface for CHARMM", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -3795,7 +3915,10 @@ }, "pageEnd": 405, "pageStart": 399, - "title": "Ion channels as drug targets: the next GPCRs" + "title": "Ion channels as drug targets: the next GPCRs", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -3853,7 +3976,10 @@ }, "issueNumber": 1 }, - "title": "Lidocaine Infusion: A Promising Therapeutic Approach for Chronic Pain" + "title": "Lidocaine Infusion: A Promising Therapeutic Approach for Chronic Pain", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -3922,7 +4048,10 @@ }, "pageEnd": 1090, "pageStart": 1084, - "title": "Structure and functional expression of a new member of the tetrodotoxin-sensitive voltage-activated sodium channel family from human neuroendocrine cells" + "title": "Structure and functional expression of a new member of the tetrodotoxin-sensitive voltage-activated sodium channel family from human neuroendocrine cells", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -4004,7 +4133,10 @@ "pageEnd": 1368, "pageStart": 1364, "title": "Design of a novel globular protein fold with atomic-level accuracy", - "url": "http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=14631033" + "url": "http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=14631033", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -4104,7 +4236,10 @@ }, "pageEnd": 680, "pageStart": 665, - "title": "Macromolecular modeling and design in Rosetta: recent methods and frameworks" + "title": "Macromolecular modeling and design in Rosetta: recent methods and frameworks", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -4205,7 +4340,10 @@ }, "pageEnd": 1136, "pageStart": 1124, - "title": "DRG Voltage-Gated Sodium Channel 1.7 Is Upregulated in Paclitaxel-Induced Neuropathy in Rats and in Humans with Neuropathic Pain" + "title": "DRG Voltage-Gated Sodium Channel 1.7 Is Upregulated in Paclitaxel-Induced Neuropathy in Rats and in Humans with Neuropathic Pain", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -4253,7 +4391,10 @@ }, "pageEnd": 99, "pageStart": "S93", - "title": "The roles of sodium channels in nociception: implications for mechanisms of neuropathic pain" + "title": "The roles of sodium channels in nociception: implications for mechanisms of neuropathic pain", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -4353,7 +4494,10 @@ }, "pageEnd": 449, "pageStart": 436, - "title": "Perturbing the energy landscape for improved packing during computational protein design" + "title": "Perturbing the energy landscape for improved packing during computational protein design", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -4396,7 +4540,10 @@ }, "pageEnd": 294, "pageStart": 283, - "title": "Animal models of pain: progress and challenges" + "title": "Animal models of pain: progress and challenges", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -4499,7 +4646,10 @@ }, "issueNumber": 5 }, - "title": "Pharmacological characterization of potent and selective NaV1.7 inhibitors engineered from Chilobrachys jingzhao tarantula venom peptide JzTx-V" + "title": "Pharmacological characterization of potent and selective NaV1.7 inhibitors engineered from Chilobrachys jingzhao tarantula venom peptide JzTx-V", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -4535,7 +4685,10 @@ "pageEnd": 561, "pageStart": 556, "title": "Systemic toxicity and cardiotoxicity from local anesthetics: incidence and preventive measures", - "url": "http://www.ncbi.nlm.nih.gov/pubmed/12430104" + "url": "http://www.ncbi.nlm.nih.gov/pubmed/12430104", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -4633,7 +4786,10 @@ }, "pageEnd": 2314, "pageStart": 2299, - "title": "Engineering potent and selective analogues of GpTx-1, a tarantula venom peptide antagonist of the Na(V)1.7 sodium channel" + "title": "Engineering potent and selective analogues of GpTx-1, a tarantula venom peptide antagonist of the Na(V)1.7 sodium channel", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -4676,7 +4832,10 @@ }, "pageEnd": 780, "pageStart": 769, - "title": "Estimates of pain prevalence and severity in adults: United States, 2012" + "title": "Estimates of pain prevalence and severity in adults: United States, 2012", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -4778,7 +4937,10 @@ }, "pageEnd": 12711, "pageStart": 12706, - "title": "Nociceptor-specific gene deletion reveals a major role for Nav1.7 (PN1) in acute and inflammatory pain" + "title": "Nociceptor-specific gene deletion reveals a major role for Nav1.7 (PN1) in acute and inflammatory pain", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -4831,7 +4993,10 @@ }, "pageEnd": 193, "pageStart": 179, - "title": "Selective Targeting of Nav1.7 with Engineered Spider Venom-Based Peptides" + "title": "Selective Targeting of Nav1.7 with Engineered Spider Venom-Based Peptides", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -4917,7 +5082,10 @@ "type": "Periodical", "name": "Science" }, - "title": "Molecular basis for pore blockade of human Na(+) channel Nav1.2 by the mu-conotoxin KIIIA" + "title": "Molecular basis for pore blockade of human Na(+) channel Nav1.2 by the mu-conotoxin KIIIA", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -5019,7 +5187,10 @@ }, "pageEnd": 6631, "pageStart": 6623, - "title": "Studies examining the relationship between the chemical structure of protoxin II and its activity on voltage gated sodium channels" + "title": "Studies examining the relationship between the chemical structure of protoxin II and its activity on voltage gated sodium channels", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -5067,7 +5238,10 @@ }, "pageEnd": 306, "pageStart": 271, - "title": "Selective Ligands and Drug Discovery Targeting the Voltage-Gated Sodium Channel Nav1.7" + "title": "Selective Ligands and Drug Discovery Targeting the Voltage-Gated Sodium Channel Nav1.7", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -5137,7 +5311,10 @@ }, "pageEnd": 358, "pageStart": 353, - "title": "The crystal structure of a voltage-gated sodium channel" + "title": "The crystal structure of a voltage-gated sodium channel", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -5202,7 +5379,10 @@ "pageEnd": 1728, "pageStart": 1724, "title": "Molecular determinants of state-dependent block of Na+ channels by local anesthetics", - "url": "http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=8085162" + "url": "http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=8085162", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -5302,7 +5482,10 @@ }, "pageEnd": 5153, "pageStart": 5148, - "title": "Pain perception is altered by a nucleotide polymorphism in SCN9A" + "title": "Pain perception is altered by a nucleotide polymorphism in SCN9A", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -5361,7 +5544,10 @@ }, "pageEnd": 14, "pageStart": 1, - "title": "Multiple sodium channels and their roles in electrogenesis within dorsal root ganglion neurons" + "title": "Multiple sodium channels and their roles in electrogenesis within dorsal root ganglion neurons", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -5424,7 +5610,10 @@ }, "pageEnd": 341, "pageStart": 327, - "title": "Numerical-Integration of Cartesian Equations of Motion of a System with Constraints - Molecular- Dynamics of N-Alkanes" + "title": "Numerical-Integration of Cartesian Equations of Motion of a System with Constraints - Molecular- Dynamics of N-Alkanes", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -5524,7 +5713,10 @@ }, "pageEnd": 1484, "pageStart": 1476, - "title": "ProTx-II, a selective inhibitor of NaV1.7 sodium channels, blocks action potential propagation in nociceptors" + "title": "ProTx-II, a selective inhibitor of NaV1.7 sodium channels, blocks action potential propagation in nociceptors", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -5602,7 +5794,10 @@ }, "pageEnd": 934, "pageStart": 931, - "title": "Managing Chronic Pain in Primary Care: It Really Does Take a Village" + "title": "Managing Chronic Pain in Primary Care: It Really Does Take a Village", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -5680,7 +5875,10 @@ }, "pageEnd": 1308, "pageStart": 1303, - "title": "Structures of human Nav1.7 channel in complex with auxiliary subunits and animal toxins" + "title": "Structures of human Nav1.7 channel in complex with auxiliary subunits and animal toxins", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -5748,7 +5946,10 @@ "type": "Periodical", "name": "Science" }, - "title": "Structures of human Nav1.7 channel in complex with auxiliary subunits and animal toxins" + "title": "Structures of human Nav1.7 channel in complex with auxiliary subunits and animal toxins", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -5833,7 +6034,10 @@ }, "issueNumber": 6328 }, - "title": "Structure of a eukaryotic voltage-gated sodium channel at near-atomic resolution" + "title": "Structure of a eukaryotic voltage-gated sodium channel at near-atomic resolution", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -5923,7 +6127,10 @@ }, "pageEnd": 10832, "pageStart": 10819, - "title": "Sodium channel Na(v)1.7 is essential for lowering heat pain threshold after burn injury" + "title": "Sodium channel Na(v)1.7 is essential for lowering heat pain threshold after burn injury", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -5985,7 +6192,10 @@ }, "pageEnd": 2424, "pageStart": 2410, - "title": "Quantitative differences in neuronal subpopulations between mouse and human dorsal root ganglia demonstrated with RNAscope in situ hybridization" + "title": "Quantitative differences in neuronal subpopulations between mouse and human dorsal root ganglia demonstrated with RNAscope in situ hybridization", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -6057,7 +6267,10 @@ }, "pageEnd": 12697, "pageStart": 12687, - "title": "Molecular interactions of the gating modifier toxin ProTx-II with NaV 1.5: implied existence of a novel toxin binding site coupled to activation" + "title": "Molecular interactions of the gating modifier toxin ProTx-II with NaV 1.5: implied existence of a novel toxin binding site coupled to activation", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -6156,7 +6369,10 @@ }, "pageEnd": 1007, "pageStart": 1003, - "title": "A classification of chronic pain for ICD-11" + "title": "A classification of chronic pain for ICD-11", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -6263,7 +6479,10 @@ }, "pageEnd": 674, "pageStart": 655, - "title": "The in vitro mechanisms and in vivo efficacy of intravenous lidocaine on the neuroinflammatory response in acute and chronic pain" + "title": "The in vitro mechanisms and in vivo efficacy of intravenous lidocaine on the neuroinflammatory response in acute and chronic pain", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -6346,7 +6565,10 @@ }, "pageEnd": 203, "pageStart": 194, - "title": "Side effects of antiepileptics--a review" + "title": "Side effects of antiepileptics--a review", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -6399,7 +6621,10 @@ }, "pageEnd": 163, "pageStart": 153, - "title": "Regulating excitability of peripheral afferents: emerging ion channel targets" + "title": "Regulating excitability of peripheral afferents: emerging ion channel targets", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -6460,7 +6685,10 @@ }, "issueNumber": 2 }, - "title": "Lamotrigine for acute and chronic pain" + "title": "Lamotrigine for acute and chronic pain", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -6531,7 +6759,10 @@ }, "issueNumber": 4 }, - "title": "Carbamazepine for chronic neuropathic pain and fibromyalgia in adults" + "title": "Carbamazepine for chronic neuropathic pain and fibromyalgia in adults", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -6629,7 +6860,10 @@ }, "pageEnd": 9512, "pageStart": 9500, - "title": "Discovery of Tarantula Venom-Derived NaV1.7-Inhibitory JzTx-V Peptide 5-Br-Trp24 Analogue AM-6120 with Systemic Block of Histamine-Induced Pruritis" + "title": "Discovery of Tarantula Venom-Derived NaV1.7-Inhibitory JzTx-V Peptide 5-Br-Trp24 Analogue AM-6120 with Systemic Block of Histamine-Induced Pruritis", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -6698,7 +6932,10 @@ "type": "Periodical", "name": "Nat Rev Drug Discov" }, - "title": "Antibodies and venom peptides: new modalities for ion channels" + "title": "Antibodies and venom peptides: new modalities for ion channels", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -6779,7 +7016,10 @@ }, "pageEnd": 1134, "pageStart": 1124, - "title": "The tarantula toxins ProTx-II and huwentoxin-IV differentially interact with human Nav1.7 voltage sensors to inhibit channel activation and inactivation" + "title": "The tarantula toxins ProTx-II and huwentoxin-IV differentially interact with human Nav1.7 voltage sensors to inhibit channel activation and inactivation", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -6866,7 +7106,10 @@ "type": "Periodical", "name": "Cell" }, - "title": "Structural Basis of Nav1.7 Inhibition by a Gating-Modifier Spider Toxin" + "title": "Structural Basis of Nav1.7 Inhibition by a Gating-Modifier Spider Toxin", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -6959,7 +7202,10 @@ "volumeNumber": 3 }, "pageStart": 1186, - "title": "Structural modelling and mutant cycle analysis predict pharmacoresponsiveness of a Na(V)1.7 mutant channel" + "title": "Structural modelling and mutant cycle analysis predict pharmacoresponsiveness of a Na(V)1.7 mutant channel", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -7048,7 +7294,10 @@ "pageEnd": 174, "pageStart": 171, "title": "Mutations in SCN9A, encoding a sodium channel alpha subunit, in patients with primary erythermalgia", - "url": "http://www.ncbi.nlm.nih.gov/pubmed/14985375" + "url": "http://www.ncbi.nlm.nih.gov/pubmed/14985375", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -7131,7 +7380,10 @@ "pageEnd": 27, "pageStart": 20, "title": "Molecular determinants of voltage-dependent gating and binding of pore-blocking drugs in transmembrane segment IIIS6 of the Na(+) channel alpha subunit", - "url": "http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=11024055" + "url": "http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=11024055", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -7213,7 +7465,10 @@ "pageEnd": 35401, "pageStart": 35393, "title": "Role of amino acid residues in transmembrane segments IS6 and IIS6 of the Na+ channel alpha subunit in voltage-dependent gating and drug block", - "url": "http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=12130650" + "url": "http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=12130650", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -7300,7 +7555,10 @@ }, "pageEnd": 399, "pageStart": 388, - "title": "Isolation and characterization of Jingzhaotoxin-V, a novel neurotoxin from the venom of the spider Chilobrachys jingzhao" + "title": "Isolation and characterization of Jingzhaotoxin-V, a novel neurotoxin from the venom of the spider Chilobrachys jingzhao", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -7399,7 +7657,10 @@ }, "pageEnd": 1610, "pageStart": 1597, - "title": "Co-expression of Na(V)beta subunits alters the kinetics of inhibition of voltage-gated sodium channels by pore-blocking mu-conotoxins" + "title": "Co-expression of Na(V)beta subunits alters the kinetics of inhibition of voltage-gated sodium channels by pore-blocking mu-conotoxins", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -7489,7 +7750,10 @@ }, "pageEnd": 616, "pageStart": 598, - "title": "Deep Sequencing of Somatosensory Neurons Reveals Molecular Determinants of Intrinsic Physiological Properties" + "title": "Deep Sequencing of Somatosensory Neurons Reveals Molecular Determinants of Intrinsic Physiological Properties", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -7552,7 +7816,10 @@ }, "pageEnd": 25, "pageStart": 17, - "title": "Topographically distinct epidermal nociceptive circuits revealed by axonal tracers targeted to Mrgprd" + "title": "Topographically distinct epidermal nociceptive circuits revealed by axonal tracers targeted to Mrgprd", + "meta": { + "publicationType": "journal" + } } ], "title": [ diff --git a/src/codecs/jats/__file_snapshots__/ca7917ff-6cb0-1014-9b19-d05ef1e56b05.json b/src/codecs/jats/__file_snapshots__/ca7917ff-6cb0-1014-9b19-d05ef1e56b05.json index 7bbcc7393..af9bf1920 100644 --- a/src/codecs/jats/__file_snapshots__/ca7917ff-6cb0-1014-9b19-d05ef1e56b05.json +++ b/src/codecs/jats/__file_snapshots__/ca7917ff-6cb0-1014-9b19-d05ef1e56b05.json @@ -334,7 +334,10 @@ }, "volumeNumber": 8 }, - "title": "Three Dopamine Pathways Induce Aversive Odor Memories with Different Stability" + "title": "Three Dopamine Pathways Induce Aversive Odor Memories with Different Stability", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -384,7 +387,10 @@ }, "volumeNumber": 5 }, - "title": "Dopaminergic neurons write and update memories with cell-type-specific rules" + "title": "Dopaminergic neurons write and update memories with cell-type-specific rules", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -605,7 +611,10 @@ }, "volumeNumber": 3 }, - "title": "Mushroom body output neurons encode valence and guide memory-based action selection in Drosophila" + "title": "Mushroom body output neurons encode valence and guide memory-based action selection in Drosophila", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -661,7 +670,10 @@ }, "pageEnd": 538, "pageStart": 535, - "title": "Conditioned reversal of reactions to normally avoided tastes" + "title": "Conditioned reversal of reactions to normally avoided tastes", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -708,7 +720,10 @@ }, "pageEnd": 750, "pageStart": 746, - "title": "Remembering Nutrient Quality of Sugar in Drosophila" + "title": "Remembering Nutrient Quality of Sugar in Drosophila", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -755,7 +770,10 @@ }, "pageEnd": 1101, "pageStart": 1087, - "title": "Recent advances in the genetic basis of taste detection in Drosophila" + "title": "Recent advances in the genetic basis of taste detection in Drosophila", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -820,7 +838,10 @@ }, "pageEnd": 1984, "pageStart": 1978, - "title": "Presynaptic Gain Control Drives Sweet and Bitter Taste Integration in Drosophila" + "title": "Presynaptic Gain Control Drives Sweet and Bitter Taste Integration in Drosophila", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -912,7 +933,10 @@ }, "pageEnd": 415, "pageStart": 405, - "title": "Writing Memories with Light-Addressable Reinforcement Circuitry" + "title": "Writing Memories with Light-Addressable Reinforcement Circuitry", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -968,7 +992,10 @@ }, "pageEnd": 1755, "pageStart": 1742, - "title": "Coordinated and Compartmentalized Neuromodulation Shapes Sensory Processing in Drosophila" + "title": "Coordinated and Compartmentalized Neuromodulation Shapes Sensory Processing in Drosophila", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -1033,7 +1060,10 @@ }, "pageEnd": 415, "pageStart": 407, - "title": "Parametric and genetic analysis of Drosophila appetitive long-term memory and sugar motivation" + "title": "Parametric and genetic analysis of Drosophila appetitive long-term memory and sugar motivation", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -1092,7 +1122,10 @@ }, "volumeNumber": 5 }, - "title": "Internal states drive nutrient homeostasis by modulating exploration-exploitation trade-off" + "title": "Internal states drive nutrient homeostasis by modulating exploration-exploitation trade-off", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -1156,7 +1189,10 @@ }, "volumeNumber": 14 }, - "title": "Tripartite Mushroom Body Architecture Revealed by Antigenic Markers" + "title": "Tripartite Mushroom Body Architecture Revealed by Antigenic Markers", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -1221,7 +1257,10 @@ }, "pageEnd": 516, "pageStart": 503, - "title": "Two Gr Genes Underlie Sugar Reception in Drosophila" + "title": "Two Gr Genes Underlie Sugar Reception in Drosophila", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -1304,7 +1343,10 @@ "volumeNumber": 36 }, "pageStart": 109620, - "title": "Glial glucose fuels the neuronal pentose phosphate pathway for long-term memory" + "title": "Glial glucose fuels the neuronal pentose phosphate pathway for long-term memory", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -1378,7 +1420,10 @@ }, "pageEnd": 1787, "pageStart": 1776, - "title": "Ir56b is an atypical ionotropic receptor that underlies appetitive salt response in Drosophila" + "title": "Ir56b is an atypical ionotropic receptor that underlies appetitive salt response in Drosophila", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -1442,7 +1487,10 @@ "volumeNumber": 223 }, "pageStart": 112976, - "title": "Socially conditioned flavor preferences with fluids: Transfer with solid foods, palatability, and testing constraints" + "title": "Socially conditioned flavor preferences with fluids: Transfer with solid foods, palatability, and testing constraints", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -1489,7 +1537,10 @@ }, "pageEnd": 179, "pageStart": 153, - "title": "Can Orally Consumed Calories Condition Preferences for Relatively Unacceptable Tastes?" + "title": "Can Orally Consumed Calories Condition Preferences for Relatively Unacceptable Tastes?", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -1536,7 +1587,10 @@ }, "pageEnd": 755, "pageStart": 751, - "title": "Drosophila Evaluates and Learns the Nutritional Value of Sugars" + "title": "Drosophila Evaluates and Learns the Nutritional Value of Sugars", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -1592,7 +1646,10 @@ }, "pageEnd": 529, "pageStart": 516, - "title": "PKA Dynamics in a Drosophila Learning Center: Coincidence Detection by Rutabaga Adenylyl Cyclase and Spatial Regulation by Dunce Phosphodiesterase" + "title": "PKA Dynamics in a Drosophila Learning Center: Coincidence Detection by Rutabaga Adenylyl Cyclase and Spatial Regulation by Dunce Phosphodiesterase", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -1678,7 +1735,10 @@ }, "volumeNumber": 4 }, - "title": "Reward signal in a recurrent circuit drives appetitive long-term memory formation" + "title": "Reward signal in a recurrent circuit drives appetitive long-term memory formation", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -1789,7 +1849,10 @@ }, "pageEnd": 595, "pageStart": 583, - "title": "Visualizing Neuromodulation In Vivo: TANGO-Mapping of Dopamine Signaling Reveals Appetite Control of Sugar Sensing" + "title": "Visualizing Neuromodulation In Vivo: TANGO-Mapping of Dopamine Signaling Reveals Appetite Control of Sugar Sensing", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -1845,7 +1908,10 @@ }, "pageEnd": 820, "pageStart": 806, - "title": "Independent, Reciprocal Neuromodulatory Control of Sweet and Bitter Taste Sensitivity during Starvation in Drosophila" + "title": "Independent, Reciprocal Neuromodulatory Control of Sweet and Bitter Taste Sensitivity during Starvation in Drosophila", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -1949,7 +2015,10 @@ }, "volumeNumber": 7 }, - "title": "A complex peripheral code for salt taste in Drosophila" + "title": "A complex peripheral code for salt taste in Drosophila", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -1996,7 +2065,10 @@ }, "pageEnd": 180, "pageStart": 173, - "title": "Optogenetic induction of aversive taste memory" + "title": "Optogenetic induction of aversive taste memory", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -2055,7 +2127,10 @@ }, "volumeNumber": 6 }, - "title": "Long-range projection neurons in the taste circuit of Drosophila" + "title": "Long-range projection neurons in the taste circuit of Drosophila", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -2102,7 +2177,10 @@ }, "pageEnd": 5958, "pageStart": 5950, - "title": "Gustatory Learning and Processing in the Drosophila Mushroom Bodies" + "title": "Gustatory Learning and Processing in the Drosophila Mushroom Bodies", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -2149,7 +2227,10 @@ }, "pageEnd": 5958, "pageStart": 5950, - "title": "Gustatory Learning and Processing in the Drosophila Mushroom Bodies" + "title": "Gustatory Learning and Processing in the Drosophila Mushroom Bodies", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -2232,7 +2313,10 @@ }, "pageEnd": 427, "pageStart": 416, - "title": "A Neural Circuit Mechanism Integrating Motivational State with Memory Expression in Drosophila" + "title": "A Neural Circuit Mechanism Integrating Motivational State with Memory Expression in Drosophila", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -2315,7 +2399,10 @@ }, "pageEnd": 2861, "pageStart": 2854, - "title": "Starvation-Induced Depotentiation of Bitter Taste in Drosophila" + "title": "Starvation-Induced Depotentiation of Bitter Taste in Drosophila", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -2434,7 +2521,10 @@ }, "pageEnd": 516, "pageStart": 512, - "title": "A subset of dopamine neurons signals reward for odour memory in Drosophila" + "title": "A subset of dopamine neurons signals reward for odour memory in Drosophila", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -2499,7 +2589,10 @@ }, "pageEnd": 1360, "pageStart": 1347, - "title": "Sleep Drive Is Encoded by Neural Plastic Changes in a Dedicated Circuit" + "title": "Sleep Drive Is Encoded by Neural Plastic Changes in a Dedicated Circuit", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -2544,7 +2637,10 @@ }, "volumeNumber": 3 }, - "title": "Eight different types of dopaminergic neurons innervate the Drosophila mushroom body neuropil: anatomical and physiological heterogeneity" + "title": "Eight different types of dopaminergic neurons innervate the Drosophila mushroom body neuropil: anatomical and physiological heterogeneity", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -2627,7 +2723,10 @@ }, "pageEnd": 295, "pageStart": 285, - "title": "Imaging Taste Responses in the Fly Brain Reveals a Functional Map of Taste Category and Behavior" + "title": "Imaging Taste Responses in the Fly Brain Reveals a Functional Map of Taste Category and Behavior", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -2683,7 +2782,10 @@ }, "pageEnd": 950, "pageStart": 941, - "title": "Dopaminergic Modulation of Sucrose Acceptance Behavior in Drosophila" + "title": "Dopaminergic Modulation of Sucrose Acceptance Behavior in Drosophila", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -2730,7 +2832,10 @@ }, "pageEnd": 14838, "pageStart": 14833, - "title": "Limited taste discrimination in Drosophila" + "title": "Limited taste discrimination in Drosophila", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -2804,7 +2909,10 @@ }, "pageEnd": 1541, "pageStart": 1535, - "title": "A Dopamine-Modulated Neural Circuit Regulating Aversive Taste Memory in Drosophila" + "title": "A Dopamine-Modulated Neural Circuit Regulating Aversive Taste Memory in Drosophila", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -2899,7 +3007,10 @@ }, "volumeNumber": 8 }, - "title": "Closed-loop optogenetic activation of peripheral or central neurons modulates feeding in freely moving Drosophila" + "title": "Closed-loop optogenetic activation of peripheral or central neurons modulates feeding in freely moving Drosophila", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -2955,7 +3066,10 @@ }, "pageEnd": 1031, "pageStart": 1023, - "title": "Delayed Dopamine Signaling of Energy Level Builds Appetitive Long-Term Memory in Drosophila" + "title": "Delayed Dopamine Signaling of Energy Level Builds Appetitive Long-Term Memory in Drosophila", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -3020,7 +3134,10 @@ }, "pageEnd": 1793, "pageStart": 1783, - "title": "A GABAergic Feedback Shapes Dopaminergic Input on the Drosophila Mushroom Body to Promote Appetitive Long-Term Memory" + "title": "A GABAergic Feedback Shapes Dopaminergic Input on the Drosophila Mushroom Body to Promote Appetitive Long-Term Memory", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -3103,7 +3220,10 @@ }, "pageEnd": 956, "pageStart": 945, - "title": "Different Kenyon Cell Populations Drive Learned Approach and Avoidance in Drosophila" + "title": "Different Kenyon Cell Populations Drive Learned Approach and Avoidance in Drosophila", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -3204,7 +3324,10 @@ "volumeNumber": 8 }, "pageStart": 15510, - "title": "Upregulated energy metabolism in the Drosophila mushroom body is the trigger for long-term memory" + "title": "Upregulated energy metabolism in the Drosophila mushroom body is the trigger for long-term memory", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -3323,7 +3446,10 @@ }, "pageEnd": 599, "pageStart": 592, - "title": "Slow oscillations in two pairs of dopaminergic neurons gate long-term memory formation in Drosophila" + "title": "Slow oscillations in two pairs of dopaminergic neurons gate long-term memory formation in Drosophila", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -3388,7 +3514,10 @@ }, "pageEnd": 1083, "pageStart": 1072, - "title": "Dopamine neurons create Pavlovian conditioned stimuli with circuit-defined motivational properties" + "title": "Dopamine neurons create Pavlovian conditioned stimuli with circuit-defined motivational properties", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -3471,7 +3600,10 @@ }, "pageEnd": 10502, "pageStart": 10495, - "title": "Dopamine and Octopamine Differentiate between Aversive and Appetitive Olfactory Memories in Drosophila" + "title": "Dopamine and Octopamine Differentiate between Aversive and Appetitive Olfactory Memories in Drosophila", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -3540,7 +3672,10 @@ "type": "PublicationVolume", "volumeNumber": 29 }, - "title": "Internal amino acid state modulates yeast taste neurons to support protein homeostasis in Drosophila" + "title": "Internal amino acid state modulates yeast taste neurons to support protein homeostasis in Drosophila", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -3578,7 +3713,10 @@ }, "pageEnd": 26, "pageStart": 3, - "title": "The organization of the chemosensory system in Drosophila melanogaster: a rewiew" + "title": "The organization of the chemosensory system in Drosophila melanogaster: a rewiew", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -3634,7 +3772,10 @@ }, "pageEnd": 755, "pageStart": 711, - "title": "Neuronal assemblies of the Drosophila mushroom body" + "title": "Neuronal assemblies of the Drosophila mushroom body", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -3720,7 +3861,10 @@ }, "volumeNumber": 13 }, - "title": "A subset of sweet-sensing neurons identified by IR56d are necessary and sufficient for fatty acid taste" + "title": "A subset of sweet-sensing neurons identified by IR56d are necessary and sufficient for fatty acid taste", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -3785,7 +3929,10 @@ }, "pageEnd": 1079, "pageStart": 1065, - "title": "Taste Perception and Coding in Drosophila" + "title": "Taste Perception and Coding in Drosophila", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -3832,7 +3979,10 @@ }, "pageEnd": 521, "pageStart": 510, - "title": "Dynamics of Learning-Related cAMP Signaling and Stimulus Integration in the Drosophila Olfactory Pathway" + "title": "Dynamics of Learning-Related cAMP Signaling and Stimulus Integration in the Drosophila Olfactory Pathway", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -3897,7 +4047,10 @@ }, "pageEnd": 1653, "pageStart": 1647, - "title": "Parallel Processing of Appetitive Short-and Long-Term Memories In Drosophila" + "title": "Parallel Processing of Appetitive Short-and Long-Term Memories In Drosophila", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -3992,7 +4145,10 @@ }, "volumeNumber": 3 }, - "title": "Shared mushroom body circuits underlie visual and olfactory memories in Drosophila" + "title": "Shared mushroom body circuits underlie visual and olfactory memories in Drosophila", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -4049,7 +4205,10 @@ }, "pageEnd": 84, "pageStart": 75, - "title": "Teaching children to like and eat vegetables" + "title": "Teaching children to like and eat vegetables", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -4114,7 +4273,10 @@ }, "pageEnd": 991, "pageStart": 981, - "title": "Taste Representations in the Drosophila Brain" + "title": "Taste Representations in the Drosophila Brain", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -4224,7 +4386,10 @@ }, "pageEnd": 583, "pageStart": 578, - "title": "Distinct dopamine neurons mediate reward signals for short-and long-term memories" + "title": "Distinct dopamine neurons mediate reward signals for short-and long-term memories", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -4280,7 +4445,10 @@ }, "pageEnd": 1338, "pageStart": 1334, - "title": "The Molecular Basis for Attractive Salt-Taste Coding in Drosophila" + "title": "The Molecular Basis for Attractive Salt-Taste Coding in Drosophila", + "meta": { + "publicationType": "journal" + } } ], "title": [ diff --git a/src/codecs/jats/__file_snapshots__/d6f14042-6db3-1014-b228-f9da7cb8e4cc.json b/src/codecs/jats/__file_snapshots__/d6f14042-6db3-1014-b228-f9da7cb8e4cc.json index 607d61dbf..83b58f386 100644 --- a/src/codecs/jats/__file_snapshots__/d6f14042-6db3-1014-b228-f9da7cb8e4cc.json +++ b/src/codecs/jats/__file_snapshots__/d6f14042-6db3-1014-b228-f9da7cb8e4cc.json @@ -399,7 +399,10 @@ }, "pageEnd": 27, "pageStart": 1, - "title": "Auxiliary Variables in Mixture Modeling: Using the BCH Method in Mplus to Estimate a Distal Outcome Model and an Arbitrary Second Model" + "title": "Auxiliary Variables in Mixture Modeling: Using the BCH Method in Mplus to Estimate a Distal Outcome Model and an Arbitrary Second Model", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -456,7 +459,10 @@ "pageEnd": 942, "pageStart": 932, "title": "A short questionnaire for the measurement of habitual physical activity in epidemiological studies", - "url": "https://doi.org/10.1093/ajcn/36.5.936" + "url": "https://doi.org/10.1093/ajcn/36.5.936", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -571,7 +577,10 @@ "pageEnd": 25, "pageStart": 1, "title": "Influence of puberty timing on adiposity and cardiometabolic traits: A Mendelian randomisation study", - "url": "https://doi.org/10.1371/journal.pmed.1002641" + "url": "https://doi.org/10.1371/journal.pmed.1002641", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -785,7 +794,10 @@ "volumeNumber": 9 }, "title": "Quantification of the pace of biological aging in humans through a blood test, the DunedinPoAm DNA methylation algorithm", - "url": "https://doi.org/10.7554/eLife.54870" + "url": "https://doi.org/10.7554/eLife.54870", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -996,7 +1008,10 @@ "volumeNumber": 11 }, "title": "DunedinPACE, A DNA methylation biomarker of the Pace of Aging", - "url": "https://doi.org/10.7554/eLife.73420" + "url": "https://doi.org/10.7554/eLife.73420", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -1064,7 +1079,10 @@ "pageEnd": "S20", "pageStart": "S15", "title": "Identifying opportunities for cancer prevention during preadolescence and adolescence: Puberty as a window of susceptibility. Journal of Adole", - "url": "https://doi.org/10.1016/j.jadohealth.2012.09.019" + "url": "https://doi.org/10.1016/j.jadohealth.2012.09.019", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -1172,7 +1190,10 @@ }, "pageEnd": 158, "pageStart": 149, - "title": "A New, Semi-Structured Psychiatric Interview for Use in Genetic Linkage Studies: A Report on the Reliability of the SSAGA" + "title": "A New, Semi-Structured Psychiatric Interview for Use in Genetic Linkage Studies: A Report on the Reliability of the SSAGA", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -1237,7 +1258,10 @@ "pageEnd": 197, "pageStart": 194, "title": "Body mass index cut offs to define thinness in children and adolescents: International survey", - "url": "https://doi.org/10.1136/bmj.39238.399444.55" + "url": "https://doi.org/10.1136/bmj.39238.399444.55", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -1339,7 +1363,10 @@ "pageEnd": 6, "pageStart": 1, "title": "Shared genetic aetiology of puberty timing between sexes and with health-related outcomes", - "url": "https://doi.org/10.1038/ncomms9842" + "url": "https://doi.org/10.1038/ncomms9842", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -1471,7 +1498,10 @@ "name": "MedRxiv" }, "title": "Obesity and accelerated epigenetic aging in a high-risk cohort of children", - "url": "https://doi.org/10.1101/2021.11.03.21265865" + "url": "https://doi.org/10.1101/2021.11.03.21265865", + "meta": { + "publicationType": "website" + } }, { "type": "Article", @@ -1541,7 +1571,10 @@ "pageEnd": 13, "pageStart": 1, "title": "Early life adversity, pubertal timing, and epigenetic age acceleration in adulthood", - "url": "https://doi.org/10.1002/dev.22085" + "url": "https://doi.org/10.1002/dev.22085", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -1713,7 +1746,10 @@ "pageEnd": 367, "pageStart": 359, "title": "Genome-wide Methylation Profiles Reveal Quantitative Views of Human Aging Rates", - "url": "https://doi.org/10.1016/j.molcel.2012.10.016" + "url": "https://doi.org/10.1016/j.molcel.2012.10.016", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -1774,7 +1810,10 @@ }, "pageEnd": 1849, "pageStart": 1839, - "title": "External-environmental and internal-health early life predictors of adolescent development" + "title": "External-environmental and internal-health early life predictors of adolescent development", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -1810,7 +1849,10 @@ "volumeNumber": 14 }, "title": "DNA methylation age of human tissues and cell types", - "url": "https://doi.org/10.1186/gb-2013-14-10-r115" + "url": "https://doi.org/10.1186/gb-2013-14-10-r115", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -1909,7 +1951,10 @@ "pageEnd": 495, "pageStart": 487, "title": "Leisure-Time and Occupational Physical Activity Associates Differently with Epigenetic Aging", - "url": "https://doi.org/10.1249/mss.0000000000002498" + "url": "https://doi.org/10.1249/mss.0000000000002498", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -1944,7 +1989,10 @@ "pageEnd": 162, "pageStart": 157, "title": "The Finnish Twin Cohort Study: an update", - "url": "https://doi.org/10.1017/thg.2012.142" + "url": "https://doi.org/10.1017/thg.2012.142", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -2006,7 +2054,10 @@ }, "pageEnd": 753, "pageStart": 739, - "title": "Common Genetic Influences on BMI and Age at Menarche" + "title": "Common Genetic Influences on BMI and Age at Menarche", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -2102,7 +2153,10 @@ }, "pageStart": 18259, "title": "Physical activity in adulthood: Genes and mortality", - "url": "https://doi.org/10.1038/srep18259" + "url": "https://doi.org/10.1038/srep18259", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -2169,7 +2223,10 @@ "pageEnd": 783, "pageStart": 778, "title": "Life Course Epidemiology", - "url": "https://doi.org/10.1136/jech.57.10.778" + "url": "https://doi.org/10.1136/jech.57.10.778", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -2251,7 +2308,10 @@ "pageEnd": 113, "pageStart": 106, "title": "Drinking, smoking, and educational achievement: Cross-lagged associations from adolescence to adulthood", - "url": "https://doi.org/10.1016/j.drugalcdep.2014.01.016" + "url": "https://doi.org/10.1016/j.drugalcdep.2014.01.016", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -2448,7 +2508,10 @@ "pageEnd": 591, "pageStart": 573, "title": "An epigenetic biomarker of aging for lifespan and healthspan", - "url": "https://doi.org/10.18632/aging.101414" + "url": "https://doi.org/10.18632/aging.101414", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -2501,7 +2564,10 @@ "pageEnd": 583, "pageStart": 575, "title": "Physical activity and risk of cardiovascular disease: What does the new epidemiological evidence show?", - "url": "https://doi.org/10.1097/HCO.0b013e328364289c" + "url": "https://doi.org/10.1097/HCO.0b013e328364289c", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -2581,7 +2647,10 @@ "pageEnd": 583, "pageStart": 575, "title": "Association between obesity and puberty timing: A systematic review and meta-analysis", - "url": "https://doi.org/10.3390/ijerph14101266" + "url": "https://doi.org/10.3390/ijerph14101266", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -2625,7 +2694,10 @@ "pageEnd": 170, "pageStart": 163, "title": "The combined effects of healthy lifestyle behaviors on all cause mortality: A systematic review and meta-analysis", - "url": "https://doi.org/10.1016/j.ypmed.2012.06.017" + "url": "https://doi.org/10.1016/j.ypmed.2012.06.017", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -2678,7 +2750,10 @@ "pageEnd": 224, "pageStart": 213, "title": "Physical activity and all-cause mortality: An updated meta-analysis with different intensity categories", - "url": "https://doi.org/10.1055/s-0028-1128150" + "url": "https://doi.org/10.1055/s-0028-1128150", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -2750,7 +2825,10 @@ "pageEnd": 1217, "pageStart": 1194, "title": "The Hallmarks of Aging", - "url": "https://doi.org/10.1016/j.cell.2013.05.039" + "url": "https://doi.org/10.1016/j.cell.2013.05.039", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -2825,7 +2903,10 @@ "pageEnd": 1757, "pageStart": 1747, "title": "Global and regional burden of disease and risk factors, 2001: systematic analysis of population health data", - "url": "https://doi.org/10.1016/S0140-6736(06)68770-9" + "url": "https://doi.org/10.1016/S0140-6736(06)68770-9", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -2984,7 +3065,10 @@ "pageEnd": 327, "pageStart": 303, "title": "DNA methylation GrimAge strongly predicts lifespan and healthspan", - "url": "https://doi.org/10.18632/aging.101684" + "url": "https://doi.org/10.18632/aging.101684", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -3100,7 +3184,10 @@ "name": "MedRxiv" }, "title": "BMI is positively associated with accelerated epigenetic aging in twin pairs discordant for BMI", - "url": "https://doi.org/10.1101/2021.03.11.21253271" + "url": "https://doi.org/10.1101/2021.03.11.21253271", + "meta": { + "publicationType": "website" + } }, { "type": "Article", @@ -3191,7 +3278,10 @@ "pageEnd": 13, "pageStart": 1, "title": "Childhood growth and development and DNA methylation age in mid-life", - "url": "https://doi.org/10.1186/s13148-021-01138-x" + "url": "https://doi.org/10.1186/s13148-021-01138-x", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -3236,7 +3326,10 @@ }, "pageEnd": 201, "pageStart": 195, - "title": "Trajectories of Alcohol Use during the Transition to Adulthood" + "title": "Trajectories of Alcohol Use during the Transition to Adulthood", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -3316,7 +3409,10 @@ "pageEnd": 25, "pageStart": 1, "title": "Genome-wide association studies identify 137 loci for DNA methylation biomarkers of ageing", - "url": "https://doi.org/10.1186/s13059-021-02398-9" + "url": "https://doi.org/10.1186/s13059-021-02398-9", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -3356,7 +3452,10 @@ "name": "Muthén & Muthén" }, "title": "Mplus User’s Guide. Eight Edition", - "url": "https://www.statmodel.com" + "url": "https://www.statmodel.com", + "meta": { + "publicationType": "book" + } }, { "type": "Article", @@ -3395,7 +3494,10 @@ }, "name": "Kluver Academic Publisher" }, - "title": "Methodology for Genetic Studies of Twins and Families" + "title": "Methodology for Genetic Studies of Twins and Families", + "meta": { + "publicationType": "book" + } }, { "type": "Article", @@ -3466,7 +3568,10 @@ }, "pageStart": 101348, "title": "A systematic review of biological, social and environmental factors associated with epigenetic clock acceleration", - "url": "https://doi.org/10.1016/j.arr.2021.101348" + "url": "https://doi.org/10.1016/j.arr.2021.101348", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -3507,7 +3612,10 @@ }, "pageEnd": 553, "pageStart": 545, - "title": "Fetal, Infant, and Childhood Growth Are Predictors of Coronary Heart Disease, Diabetes, and Hypertension in Adult Men and Women" + "title": "Fetal, Infant, and Childhood Growth Are Predictors of Coronary Heart Disease, Diabetes, and Hypertension in Adult Men and Women", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -3571,7 +3679,10 @@ "pageEnd": 1000, "pageStart": 985, "title": "The impact of childhood obesity on morbidity and mortality in adulthood: A systematic review", - "url": "https://doi.org/10.1111/j.1467-789X.2012.01015.x" + "url": "https://doi.org/10.1111/j.1467-789X.2012.01015.x", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -3629,7 +3740,10 @@ }, "pageEnd": 133, "pageStart": 117, - "title": "A self-report measure of pubertal status: Reliability, validity, and initial norms" + "title": "A self-report measure of pubertal status: Reliability, validity, and initial norms", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -3678,7 +3792,10 @@ "pageEnd": 28, "pageStart": 7, "title": "From Developmental Origins of Adult Disease to Life Course Research on Adult Disease and Aging: Insights from Birth Cohort Studies", - "url": "https://doi.org/10.1146/annurev-publhealth-031912-114423" + "url": "https://doi.org/10.1146/annurev-publhealth-031912-114423", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -3723,7 +3840,10 @@ "pageEnd": 1043, "pageStart": 1036, "title": "Pubertal timing and adult obesity and cardiometabolic risk in women and men: A systematic review and meta-analysis", - "url": "https://doi.org/10.1038/ijo.2012.177" + "url": "https://doi.org/10.1038/ijo.2012.177", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -3811,7 +3931,10 @@ "issueNumber": 6 }, "title": "Socioeconomic disadvantage and the pace of biological aging in children", - "url": "https://doi.org/10.1542/peds.2020-024406" + "url": "https://doi.org/10.1542/peds.2020-024406", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -3856,7 +3979,10 @@ "pageEnd": 898, "pageStart": 891, "title": "Long-term impact of overweight and obesity in childhood and adolescence on morbidity and premature mortality in adulthood: Systematic review", - "url": "https://doi.org/10.1038/ijo.2010.222" + "url": "https://doi.org/10.1038/ijo.2010.222", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -3932,7 +4058,10 @@ "pageEnd": 693, "pageStart": 685, "title": "Ability of the atherosclerosis risk in communities (ARIC)/baecke questionnaire to assess leisure-time physical activity", - "url": "https://doi.org/10.1093/ije/24.4.685" + "url": "https://doi.org/10.1093/ije/24.4.685", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -4001,7 +4130,10 @@ "pageEnd": 12, "pageStart": 1, "title": "Use of genetic variation to separate the effects of early and later life adiposity on disease risk: Mendelian randomisation study", - "url": "https://doi.org/10.1136/bmj.m1203" + "url": "https://doi.org/10.1136/bmj.m1203", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -4169,7 +4301,10 @@ "pageEnd": 311, "pageStart": 302, "title": "FinnTwin12 Cohort: An Updated Review", - "url": "https://doi.org/10.1017/thg.2019.83" + "url": "https://doi.org/10.1017/thg.2019.83", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -4299,7 +4434,10 @@ "pageEnd": 1083, "pageStart": 1073, "title": "Longitudinal physical activity trajectories from childhood to adulthood and their determinants: The Young Finns Study", - "url": "https://doi.org/10.1111/sms.12988" + "url": "https://doi.org/10.1111/sms.12988", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -4425,7 +4563,10 @@ "issueNumber": 6 }, "title": "Smoking and physical activity trajectories from childhood to midlife", - 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"url": "https://doi.org/10.1093/ije/dyw307" + "url": "https://doi.org/10.1093/ije/dyw307", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -4829,7 +4979,10 @@ }, "pageEnd": 328, "pageStart": 318, - "title": "Associations of Alcohol Consumption With EpigenomelWide DNA Methylation and Epigenetic Age Acceleration: Individual-Level and Co-twin Comparison Analyses" + "title": "Associations of Alcohol Consumption With EpigenomelWide DNA Methylation and Epigenetic Age Acceleration: Individual-Level and Co-twin Comparison Analyses", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -4920,7 +5073,10 @@ "pageEnd": 423, "pageStart": 417, "title": "Genetic and environmental influences on pubertal timing assessed by height growth", - "url": "https://doi.org/10.1002/ajhb.20748" + "url": "https://doi.org/10.1002/ajhb.20748", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -5009,7 +5165,10 @@ "pageEnd": 12, "pageStart": 1, "title": "Clustering of health-related behaviours within children aged 11–16: a systematic review", - 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Springer International Publishing", - "url": "https://doi.org/10.1007/978-3-319-24277-4" + "url": "https://doi.org/10.1007/978-3-319-24277-4", + "meta": { + "publicationType": "book" + } }, { "type": "Article", @@ -7177,7 +7351,10 @@ "pageEnd": 1005, "pageStart": 996, "title": "Lipid accumulation in hepatocytes induces fibrogenic activation of hepatic stellate cells", - "url": "https://doi.org/10.1038/cr.2009.73" + "url": "https://doi.org/10.1038/cr.2009.73", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -7217,7 +7394,10 @@ "pageEnd": 529, "pageStart": 521, "title": "Facultative stem cells in liver and pancreas: Fact and fancy", - "url": "https://doi.org/10.1002/dvdy.22561" + "url": "https://doi.org/10.1002/dvdy.22561", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -7275,7 +7455,10 @@ "pageEnd": 287, "pageStart": 284, "title": "clusterProfiler: an R Package for Comparing Biological Themes Among Gene Clusters", - "url": "https://doi.org/10.1089/omi.2011.0118" + "url": "https://doi.org/10.1089/omi.2011.0118", + "meta": { + "publicationType": "journal" + } }, { "type": "Article", @@ -7414,7 +7597,10 @@ "pageEnd": 1443, "pageStart": 1436, "title": "NAD + repletion improves mitochondrial and stem cell function and enhances life span in mice", - "url": "https://doi.org/10.1126/science.aaf2693" + "url": "https://doi.org/10.1126/science.aaf2693", + "meta": { + "publicationType": "journal" + } } ], "title": "Hepatic lipid overload potentiates biliary epithelial cell activation via E2Fs", diff --git a/src/codecs/jats/__file_snapshots__/elife-30274-v1.yaml b/src/codecs/jats/__file_snapshots__/elife-30274-v1.yaml index b2e3947df..8d5860152 100644 --- a/src/codecs/jats/__file_snapshots__/elife-30274-v1.yaml +++ b/src/codecs/jats/__file_snapshots__/elife-30274-v1.yaml @@ -361,6 +361,8 @@ references: name: BMJ volumeNumber: 332 title: The cost of dichotomising continuous variables + meta: + publicationType: journal - type: Article id: bib2 authors: @@ -395,6 +397,8 @@ references: pageEnd: 291 pageStart: 288 title: The error of the red cell count + meta: + publicationType: journal - type: Article id: bib3 authors: @@ -435,6 +439,8 @@ references: title: >- Registered report: Transcriptional amplification in tumor cells with elevated c-Myc + meta: + publicationType: journal - 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type: Article id: bib32 authors: @@ -2371,6 +2433,8 @@ references: title: >- Linkage disequilibrium and association with methamphetamine dependence/psychosis of mu-opioid receptor gene polymorphisms + meta: + publicationType: journal - type: Article id: bib33 authors: @@ -2433,6 +2497,8 @@ references: title: >- No unexpected CRISPR-Cas9 off-target activity revealed by trio sequencing of gene-edited mice + meta: + publicationType: journal - type: Article id: bib34 authors: @@ -2489,6 +2555,8 @@ references: title: >- A programmable dual-RNA-guided DNA endonuclease in adaptive bacterial immunity + meta: + publicationType: journal - type: Article id: bib35 authors: @@ -2525,6 +2593,8 @@ references: title: >- Trace amine-associated receptor 1: a promising target for the treatment of psychostimulant addiction + meta: + publicationType: journal - type: Article id: bib36 authors: @@ -2605,6 +2675,8 @@ references: name: Frontiers in Pharmacology volumeNumber: 9 title: Behavioral effects of a potential novel TAAR1 antagonist + meta: + publicationType: journal - type: Article id: bib37 authors: @@ -2634,6 +2706,8 @@ references: pageEnd: 331 pageStart: 323 title: Molecular mechanisms of epistasis within and between genes + meta: + publicationType: journal - type: Article id: bib38 authors: @@ -2690,6 +2764,8 @@ references: title: >- Taar1-mediated modulation of presynaptic dopaminergic neurotransmission: role of D2 dopamine autoreceptors + meta: + publicationType: journal - type: Article id: bib39 authors: @@ -2769,6 +2845,8 @@ references: pageEnd: 956 pageStart: 948 title: Trace amine-associated receptor 1 modulates dopaminergic activity + meta: + publicationType: journal - type: Article id: bib40 authors: @@ -2820,6 +2898,8 @@ references: title: >- Role of TAAR1 within the subregions of the mesocorticolimbic dopaminergic system in Cocaine-Seeking behavior + meta: + publicationType: journal - type: Article id: bib41 authors: @@ -2855,6 +2935,8 @@ references: name: Frontiers in Pharmacology volumeNumber: 9 title: 'TAAR1 in addiction: looking beyond the tip of the iceberg' + meta: + publicationType: journal - type: Article id: bib42 authors: @@ -2950,6 +3032,8 @@ references: title: >- Mesocorticolimbic monoamine correlates of methamphetamine sensitization and motivation + meta: + publicationType: journal - type: Article id: bib43 authors: @@ -3066,6 +3150,8 @@ references: title: >- Prefrontal glutamate correlates of methamphetamine sensitization and preference + meta: + publicationType: journal - type: Article id: bib44 authors: @@ -3156,6 +3242,8 @@ references: title: >- Correction of the auditory phenotype in C57BL/6N mice via CRISPR/Cas9-mediated homology directed repair + meta: + publicationType: journal - type: Article id: bib45 authors: @@ -3207,6 +3295,8 @@ references: title: >- Low body temperature affects associative processes in long-trace conditioned flavor aversion + meta: + publicationType: journal - type: Article id: bib46 authors: @@ -3268,6 +3358,8 @@ references: title: >- Low body temperature, time dilation, and long-trace conditioned flavor aversion in rats + meta: + publicationType: journal - type: Article id: bib47 authors: @@ -3312,6 +3404,8 @@ references: pageEnd: 120 pageStart: 75 title: 'GeneNetwork: a toolbox for systems genetics' + meta: + publicationType: journal - type: Article id: bib48 authors: @@ -3346,6 +3440,8 @@ references: pageEnd: 272 pageStart: 255 title: The virtuous cycle of human genetics and mouse models in drug discovery + meta: + publicationType: journal - type: Article id: bib49 authors: @@ -3401,6 +3497,8 @@ references: name: Scientific Reports volumeNumber: 6 title: Exome sequencing in the knockin mice generated using the CRISPR/Cas system + meta: + publicationType: journal - type: Article id: bib50 authors: @@ -3412,6 +3510,8 @@ references: title: Overdose death rates url: >- https://www.drugabuse.gov/related-topics/trends-statistics/overdose-death-rates + meta: + publicationType: web - type: Article id: bib51 authors: @@ -3422,6 +3522,8 @@ references: value: '2019' title: Methamphetamine url: https://www.drugabuse.gov/publications/research-reports/methamphetamine/ + meta: + publicationType: web - type: Article id: bib52 authors: @@ -3442,6 +3544,8 @@ references: addressLocality: Washington, DC name: The National Academies Press title: Guide for the Care and Use of Laboratory Animals + meta: + publicationType: book - type: Article id: bib53 authors: @@ -3488,6 +3592,8 @@ references: title: >- A partial trace amine-associated receptor 1 agonist exhibits properties consistent with a methamphetamine substitution treatment + meta: + publicationType: journal - type: Article id: bib54 authors: @@ -3553,6 +3659,8 @@ references: title: >- A spontaneous mutation in Taar1 Impacts Methamphetamine-Related Traits Exclusively in DBA/2 Mice from a Single Vendor + meta: + publicationType: journal - type: Article id: bib55 authors: @@ -3674,6 +3782,8 @@ references: title: >- TAAR1 activation modulates monoaminergic neurotransmission, preventing hyperdopaminergic and hypoglutamatergic activity + meta: + publicationType: journal - type: Article id: bib56 authors: @@ -3714,6 +3824,8 @@ references: name: Frontiers in Pharmacology volumeNumber: 8 title: The case for TAAR1 as a modulator of central nervous system function + meta: + publicationType: journal - type: Article id: bib57 authors: @@ -3765,6 +3877,8 @@ references: title: >- Sensitivity to rewarding or aversive effects of methamphetamine determines methamphetamine intake + meta: + publicationType: journal - type: Article id: bib58 authors: @@ -3821,6 +3935,8 @@ references: title: >- A genetic animal model of differential sensitivity to methamphetamine reinforcement + meta: + publicationType: journal - type: Article id: bib59 authors: @@ -3867,6 +3983,8 @@ references: title: >- Profound reduction in sensitivity to the aversive effects of methamphetamine in mice bred for high methamphetamine intake + meta: + publicationType: journal - type: Article id: bib60 authors: @@ -3932,6 +4050,8 @@ references: name: Frontiers in Neuroscience volumeNumber: 10 title: A mouse model for Binge-Level methamphetamine use + meta: + publicationType: journal - type: Article id: bib61 authors: @@ -3994,6 +4114,8 @@ references: title: >- Depression-like symptoms of withdrawal in a genetic mouse model of binge methamphetamine intake + meta: + publicationType: journal - 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type: Article id: bib128 authors: @@ -8508,6 +8762,8 @@ references: title: >- HERC2 facilitates BLM and WRN helicase complex interaction with RPA to suppress G-Quadruplex DNA + meta: + publicationType: journal - type: Article id: bib129 authors: @@ -8542,6 +8798,8 @@ references: pageEnd: 3488 pageStart: 3470 title: G-quadruplex nucleic acids and human disease + meta: + publicationType: journal - type: Article id: bib130 authors: @@ -8765,6 +9023,8 @@ references: title: >- CX-5461 is a DNA G-quadruplex stabilizer with selective lethality in BRCA1/2 deficient tumours + meta: + publicationType: journal - type: Article id: bib131 authors: @@ -8822,6 +9082,8 @@ references: title: >- Topoisomerase I plays a critical role in suppressing genome instability at a highly transcribed G-quadruplex-forming sequence + meta: + publicationType: journal - type: Article id: bib132 authors: @@ -8852,6 +9114,8 @@ references: pageEnd: 968 pageStart: 951 title: Structure of the biologically relevant G-Quadruplex in the c-MYC promoter + meta: + publicationType: journal - type: Article id: bib133 authors: @@ -8911,6 +9175,8 @@ references: pageEnd: D284 pageStart: D281 title: 'Gene3D: modelling protein structure, function and evolution' + meta: + publicationType: journal - type: Article id: bib134 authors: @@ -8962,6 +9228,8 @@ references: title: >- The clinical significance of cyclin B1 and Wee1 expression in non-small-cell lung cancer + meta: + publicationType: journal - type: Article id: bib135 authors: @@ -9018,6 +9286,8 @@ references: title: >- Downregulation of Nedd4L predicts poor prognosis, promotes tumor growth and inhibits MAPK/ERK signal pathway in hepatocellular carcinoma + meta: + publicationType: journal - type: Article id: bib136 authors: @@ -9095,6 +9365,8 @@ references: title: >- BCLAF1 and its splicing regulator SRSF10 regulate the tumorigenic potential of colon cancer cells + meta: + publicationType: journal - type: Article id: bib137 authors: @@ -9201,6 +9473,8 @@ references: title: >- Targeting BRCA1 and BRCA2 deficiencies with G-Quadruplex-Interacting compounds + meta: + publicationType: journal title: Genetic interactions of G-quadruplexes in humans meta: authorNotes: diff --git a/src/codecs/jats/__file_snapshots__/elife-52882-v2.yaml b/src/codecs/jats/__file_snapshots__/elife-52882-v2.yaml index 6cccd6274..efaba0209 100644 --- a/src/codecs/jats/__file_snapshots__/elife-52882-v2.yaml +++ b/src/codecs/jats/__file_snapshots__/elife-52882-v2.yaml @@ -367,6 +367,8 @@ references: title: >- "Decision"-making in bacteria: chemotactic response of Escherichia coli to conflicting stimuli + meta: + publicationType: journal - type: Article id: bib2 authors: @@ -418,6 +420,8 @@ references: title: >- Whole-brain functional imaging at cellular resolution using light-sheet microscopy + meta: + publicationType: journal - type: Article id: bib3 authors: @@ -443,6 +447,8 @@ references: pageEnd: 129 pageStart: 128 title: 'CircStat: a MATLAB toolbox for circular statistics' + meta: + publicationType: journal - type: Article id: bib4 authors: @@ -473,6 +479,8 @@ references: pageEnd: 504 pageStart: 500 title: Chemotaxis in E coli analysed by 3D tracking + meta: + publicationType: journal - type: Article id: bib5 authors: @@ -509,6 +517,8 @@ references: name: Frontiers in Systems Neuroscience volumeNumber: 5 title: Prey capture behavior evoked by simple visual stimuli in larval zebrafish + meta: + publicationType: journal - type: Article id: bib6 authors: @@ -543,6 +553,8 @@ references: pageEnd: 846 pageStart: 831 title: Visuomotor transformations underlying hunting behavior in zebrafish + meta: + publicationType: journal - 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type: Article id: bib13 authors: @@ -829,6 +853,8 @@ references: title: >- Brain-wide mapping of neural activity controlling zebrafish exploratory locomotion + meta: + publicationType: journal - type: Article id: bib14 authors: @@ -863,6 +889,8 @@ references: pageEnd: 663 pageStart: 646 title: The development of vision in the zebrafish (Danio rerio) + meta: + publicationType: journal - type: Article id: bib15 authors: @@ -917,6 +945,8 @@ references: pageEnd: 19131 pageStart: 19126 title: OFF ganglion cells cannot drive the optokinetic reflex in zebrafish + meta: + publicationType: journal - type: Article id: bib16 authors: @@ -957,6 +987,8 @@ references: pageEnd: 6039 pageStart: 6034 title: Zebrafish larvae lose vision at night + meta: + publicationType: journal - type: Article id: bib17 authors: @@ -972,6 +1004,8 @@ references: type: Organization name: Nabu Press title: Elemente Der Psychophysik + meta: + publicationType: book - type: Article id: bib18 authors: @@ -1028,6 +1062,8 @@ references: title: >- Deep brain photoreceptors control light-seeking behavior in zebrafish larvae + meta: + publicationType: journal - type: Article id: bib19 authors: @@ -1069,6 +1105,8 @@ references: title: >- Small modulation of ongoing cortical dynamics by sensory input during natural vision + meta: + publicationType: journal - type: Article id: bib20 authors: @@ -1089,6 +1127,8 @@ references: type: Organization name: Dover Publications, Inc title: The Orientation of Animals, Kinesis, Taxes and Compass Reactions + meta: + publicationType: book - type: Article id: bib21 authors: @@ -1117,6 +1157,8 @@ references: title: >- The hebbian paradigm reintegrated: local reverberations as internal representations + meta: + publicationType: journal - type: Article id: bib22 authors: @@ -1157,6 +1199,8 @@ references: name: PLOS ONE volumeNumber: 10 title: The behavioral space of zebrafish locomotion and its neural network analog + meta: + publicationType: journal - type: Article id: bib23 authors: @@ -1196,6 +1240,8 @@ references: pageEnd: 441 pageStart: 410 title: Active sampling and decision making in Drosophila chemotaxis + meta: + publicationType: journal - 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type: Article id: bib29 authors: @@ -1487,6 +1543,8 @@ references: name: GitLab title: Programs closed-loop phototaxis url: https://gitlab.com/Phiasso/programs_closed-loop_phototaxis.git + meta: + publicationType: software - type: Article id: bib30 authors: @@ -1503,6 +1561,8 @@ references: name: GitLab title: Analysis behavioral phototaxis url: https://gitlab.com/Phiasso/analysis.git + meta: + publicationType: software - type: Article id: bib31 authors: @@ -1573,6 +1633,8 @@ references: name: PLOS ONE volumeNumber: 10 title: Statistical analysis of zebrafish locomotor response + meta: + publicationType: journal - type: Article id: bib32 authors: @@ -1603,6 +1665,8 @@ references: pageEnd: 496 pageStart: 477 title: Statistical measures of bacterial motility + meta: + publicationType: journal - type: Article id: bib33 authors: @@ -1637,6 +1701,8 @@ references: pageEnd: 2512 pageStart: 2509 title: The gradient-sensing mechanism in bacterial chemotaxis + meta: + publicationType: journal - type: Article id: bib34 authors: @@ -1674,6 +1740,8 @@ references: title: >- Phototaxis during the slug stage of Dictyostelium discoideum: a model study + meta: + publicationType: journal - type: Article id: bib35 authors: @@ -1720,6 +1788,8 @@ references: title: >- Structure of the zebrafish locomotor repertoire revealed with unsupervised behavioral clustering + meta: + publicationType: journal - type: Article id: bib36 authors: @@ -1757,6 +1827,8 @@ references: title: >- Photo-tropotaxis based on projection through the cerebral commissure in the terrestrial slug Limax + meta: + publicationType: journal - type: Article id: bib37 authors: @@ -1844,6 +1916,8 @@ references: title: >- A comparative analysis of the preference for dark environments in five teleosts + meta: + publicationType: journal - type: Article id: bib38 authors: @@ -1886,6 +1960,8 @@ references: title: >- Fin-tail coordination during escape and predatory behavior in larval zebrafish + meta: + publicationType: journal - type: Article id: bib39 authors: @@ -1922,6 +1998,8 @@ references: title: >- Effects of adaptation in maintaining high sensitivity over a wide range of backgrounds for Escherichia coli chemotaxis + meta: + publicationType: journal - type: Article id: bib40 authors: @@ -1971,6 +2049,8 @@ references: pageEnd: 3378 pageStart: 3369 title: Step-response analysis of chemotaxis in Caenorhabditis elegans + meta: + publicationType: journal - type: Article id: bib41 authors: @@ -2010,6 +2090,8 @@ references: pageEnd: 6537 pageStart: 6532 title: Single-cell twitching chemotaxis in developing biofilms + meta: + publicationType: journal - type: Article id: bib42 authors: @@ -2046,6 +2128,8 @@ references: title: >- Channeling of red and green cone inputs to the zebrafish optomotor response + meta: + publicationType: journal - type: Article id: bib43 authors: @@ -2107,6 +2191,8 @@ references: title: >- Fast functional imaging of multiple brain regions in intact zebrafish larvae using selective plane illumination microscopy + meta: + publicationType: journal - type: Article id: bib44 authors: @@ -2154,6 +2240,8 @@ references: title: >- Hypocretin/Orexin overexpression induces an Insomnia-Like phenotype in zebrafish + meta: + publicationType: journal - type: Article id: bib45 authors: @@ -2196,6 +2284,8 @@ references: title: >- Sensorimotor transformation from light reception to phototactic behavior inDrosophila larvae (Diptera: Drosophilidae) + meta: + publicationType: journal - type: Article id: bib46 authors: @@ -2231,6 +2321,8 @@ references: pageEnd: 1553 pageStart: 1551 title: Natural preference of zebrafish (Danio rerio) for a dark environment + meta: + publicationType: journal - type: Article id: bib47 authors: @@ -2265,6 +2357,8 @@ references: pageEnd: 633 pageStart: 628 title: 'Motion perception: seeing and deciding' + meta: + publicationType: journal - type: Article id: bib48 authors: @@ -2301,6 +2395,8 @@ references: title: >- Neural basis of a perceptual decision in the parietal cortex (area LIP) of the rhesus monkey + meta: + publicationType: journal - type: Article id: bib49 authors: @@ -2346,6 +2442,8 @@ references: name: PLOS Computational Biology volumeNumber: 4 title: Dimensionality and dynamics in the behavior of C. elegans + meta: + publicationType: journal - type: Article id: bib50 authors: @@ -2413,6 +2511,8 @@ references: title: >- Sensorimotor pathway controlling stopping behavior during chemotaxis in the Drosophila Melanogaster larva + meta: + publicationType: journal - type: Article id: bib51 authors: @@ -2459,6 +2559,8 @@ references: title: >- Linking spontaneous activity of single cortical neurons and the underlying functional architecture + meta: + publicationType: journal - type: Article id: bib52 authors: @@ -2489,6 +2591,8 @@ references: pageEnd: 841 pageStart: 823 title: On the theory of the brownian motion + meta: + publicationType: journal - type: Article id: bib53 authors: @@ -2518,6 +2622,8 @@ references: pageEnd: 463 pageStart: 455 title: Synaptic reverberation underlying mnemonic persistent activity + meta: + publicationType: journal - type: Article id: bib54 authors: @@ -2547,6 +2653,8 @@ references: pageEnd: 968 pageStart: 955 title: Probabilistic decision making by slow reverberation in cortical circuits + meta: + publicationType: journal - type: Article id: bib55 authors: @@ -2576,6 +2684,8 @@ references: pageEnd: 234 pageStart: 215 title: Decision making in recurrent neuronal circuits + meta: + publicationType: journal - type: Article id: bib56 authors: @@ -2607,6 +2717,8 @@ references: title: >- Chemotaxis by the nematode Caenorhabditis elegans: identification of attractants and analysis of the response by use of mutants + meta: + publicationType: journal - type: Article id: bib57 authors: @@ -2651,6 +2763,8 @@ references: pageEnd: 922 pageStart: 916 title: Light-sensitive neurons and channels mediate phototaxis in C. elegans + meta: + publicationType: journal - type: Article id: bib58 authors: @@ -2726,6 +2840,8 @@ references: pageEnd: 12 pageStart: 1 title: Sensorimotor computation underlying phototaxis in zebrafish + meta: + publicationType: journal - type: Article id: bib59 authors: @@ -2772,6 +2888,8 @@ references: title: >- Asymmetry in the clockwise and counterclockwise rotation of the bacterial flagellar motor + meta: + publicationType: journal title: >- From behavior to circuit modeling of light-seeking navigation in zebrafish larvae diff --git a/src/codecs/jats/__file_snapshots__/f1000-7-1655-v1.yaml b/src/codecs/jats/__file_snapshots__/f1000-7-1655-v1.yaml index 4ede79709..31483d3d6 100644 --- a/src/codecs/jats/__file_snapshots__/f1000-7-1655-v1.yaml +++ b/src/codecs/jats/__file_snapshots__/f1000-7-1655-v1.yaml @@ -281,6 +281,8 @@ references: Journal Article Versions (JAV): Recommendations of the NISO/ALPSP JAV Technical Working Group (NISO-RP-8-2008) url: https://groups.niso.org/publications/rp/RP-8-2008.pdf + meta: + publicationType: journal - type: Article id: ref-2 authors: @@ -323,6 +325,8 @@ references: pageEnd: 547 pageStart: 545 title: Publish peer reviews. + meta: + publicationType: journal - type: Article id: ref-3 authors: @@ -357,6 +361,8 @@ references: title: >- What is open peer review? A systematic review [version 2; referees: 4 approved]. + meta: + publicationType: journal title: Publishing peer review materials meta: authorNotes: diff --git a/src/codecs/jats/__file_snapshots__/f1000-8-1394-v1.yaml b/src/codecs/jats/__file_snapshots__/f1000-8-1394-v1.yaml index bf360b8ce..d3cfe3608 100644 --- a/src/codecs/jats/__file_snapshots__/f1000-8-1394-v1.yaml +++ b/src/codecs/jats/__file_snapshots__/f1000-8-1394-v1.yaml @@ -219,6 +219,7 @@ references: title: Hemp food products - A problem? meta: label: '1' + publicationType: journal - type: Article id: ref-2 authors: @@ -251,6 +252,7 @@ references: title: Hemp food products - an update. meta: label: '2' + publicationType: journal - type: Article id: ref-3 authors: @@ -264,6 +266,7 @@ references: https://www.who.int/medicines/access/controlled-substances/CannabidiolCriticalReview.pdf meta: label: '3' + publicationType: journal - type: Article id: ref-4 authors: @@ -280,6 +283,7 @@ references: https://www.naturalproductsinsider.com/ingredients/researching-safety-and-efficacy-cbd-hemp-extracts meta: label: '4' + publicationType: journal - type: Article id: ref-5 authors: @@ -309,6 +313,7 @@ references: Cannabidiol-haltigen Extrakten. meta: label: '5' + publicationType: journal - type: Article id: ref-6 authors: @@ -336,6 +341,7 @@ references: title: The trouble with CBD oil. meta: label: '6' + publicationType: journal - type: Article id: ref-7 authors: @@ -357,6 +363,7 @@ references: https://drjohnwilkinson.co.uk/wp-content/uploads/SDI_DrJohn-cannabis-Dec-Drinks-2015-1.pdf meta: label: '7' + publicationType: journal - type: Article id: ref-8 authors: @@ -400,6 +407,7 @@ references: refractory epilepsy. meta: label: '8' + publicationType: journal - type: Article id: ref-9 authors: @@ -451,6 +459,7 @@ references: results. meta: label: '9' + publicationType: journal - type: Article id: ref-10 authors: @@ -497,6 +506,7 @@ references: interventional trial. meta: label: '10' + publicationType: journal - type: Article id: ref-11 authors: @@ -547,6 +557,7 @@ references: Gastric and Physiological Fluid. meta: label: '11' + publicationType: journal - type: Article id: ref-12 authors: @@ -559,6 +570,7 @@ references: url: https://www.edqm.eu/en/european-pharmacopoeia-ph-eur-9th-edition meta: label: '12' + publicationType: journal - type: Article id: ref-13 authors: @@ -576,6 +588,7 @@ references: url: http://www.doi.org/10.17605/OSF.IO/F7ZXY meta: label: '13' + publicationType: journal - type: Article id: ref-14 authors: @@ -591,6 +604,7 @@ references: https://www.bfr.bund.de/de/presseinformation/2000/07/bgvv_empfiehlt_richtwerte_fuer_thc__tetrahydrocannabinol__in_hanfhaltigen_lebensmitteln-884.html meta: label: '14' + publicationType: journal - type: Article id: ref-15 authors: @@ -619,6 +633,7 @@ references: of tetrahydrocannabinol (THC) in milk and other food of animal origin. meta: label: '15' + publicationType: journal - type: Article id: ref-16 authors: @@ -665,6 +680,7 @@ references: Supercritical Fluid Extract of the Aerial Parts of Hemp. meta: label: '16' + publicationType: journal - type: Article id: ref-17 authors: @@ -708,6 +724,7 @@ references: cannabidiol to cannabinol. meta: label: '17' + publicationType: journal - type: Article id: ref-18 authors: @@ -748,6 +765,7 @@ references: title: Structure of cannabidiol. XII. Isomerization to tetrahydrocannabinols. meta: label: '18' + publicationType: journal - type: Article id: ref-19 authors: @@ -790,6 +808,7 @@ references: 9-tetrahydrocannabinol and related cannabinoids in artificial gastric juice, and their pharmacological effects in mice. meta: label: '19' + publicationType: journal - type: Article id: ref-20 authors: @@ -825,6 +844,7 @@ references: title: Current status of THC in German hemp food products. meta: label: '20' + publicationType: journal - type: Article id: ref-21 authors: @@ -859,6 +879,7 @@ references: products - a review. meta: label: '21' + publicationType: journal - type: Article id: ref-22 authors: @@ -890,6 +911,7 @@ references: title: 'Cannabis use in Europe: Current trends and public health concerns.' meta: label: '22' + publicationType: journal - type: Article id: ref-23 authors: @@ -940,6 +962,7 @@ references: to Occur in Humans. meta: label: '23' + publicationType: journal - type: Article id: ref-24 authors: @@ -991,6 +1014,7 @@ references: et al.Cannabis and Cannabinoid Research 2016;1(1):102-112; DOI: 10.1089/can.2015.0004. meta: label: '24' + publicationType: journal - type: Article id: ref-25 authors: @@ -1014,6 +1038,7 @@ references: https://publications.europa.eu/en/publication-detail/-/publication/d2e5f917-9fd7-11e5-8781-01aa75ed71a1/language-en meta: label: '25' + publicationType: journal - type: Article id: ref-26 authors: @@ -1038,6 +1063,7 @@ references: url: https://eur-lex.europa.eu/eli/reg/2011/1169/oj meta: label: '26' + publicationType: journal - type: Article id: ref-27 authors: @@ -1058,6 +1084,7 @@ references: https://eur-lex.europa.eu/LexUriServ/LexUriServ.do?uri=OJ:L:2006:404:0009:0025:EN:PDF meta: label: '27' + publicationType: journal - type: Article id: ref-28 authors: @@ -1099,6 +1126,7 @@ references: illicit drugs using the margin of exposure approach. meta: label: '28' + publicationType: journal - type: Article id: ref-29 authors: @@ -1133,6 +1161,7 @@ references: title: Pharmacokinetics and pharmacodynamics of cannabinoids. meta: label: '29' + publicationType: journal - type: Article id: ref-30 authors: @@ -1168,6 +1197,7 @@ references: title: '[Cannabis poisoning after eating salad].' meta: label: '30' + publicationType: journal - type: Article id: ref-31 authors: @@ -1187,6 +1217,7 @@ references: 034/2018 des BfR vom 8. November 2018. meta: label: '31' + publicationType: journal - type: Article id: ref-32 authors: @@ -1235,6 +1266,7 @@ references: title: Labeling Accuracy of Cannabidiol Extracts Sold Online. meta: label: '32' + publicationType: journal title: >- Are side effects of cannabidiol (CBD) products caused by tetrahydrocannabinol (THC) contamination? diff --git a/src/codecs/jats/__file_snapshots__/f1000-8-978-v1.yaml b/src/codecs/jats/__file_snapshots__/f1000-8-978-v1.yaml index baa0a2260..be7c5701e 100644 --- a/src/codecs/jats/__file_snapshots__/f1000-8-978-v1.yaml +++ b/src/codecs/jats/__file_snapshots__/f1000-8-978-v1.yaml @@ -289,6 +289,7 @@ references: title: Impacts of climate change on the future of biodiversity. meta: label: '1' + publicationType: journal - type: Article id: ref-2 authors: @@ -328,6 +329,7 @@ references: knowledge from forests. meta: label: '2' + publicationType: journal - type: Article id: ref-3 authors: @@ -367,6 +369,7 @@ references: complex than expected. evidence from a case study in the himalaya. meta: label: '3' + publicationType: journal - type: Article id: ref-4 authors: @@ -386,6 +389,7 @@ references: https://research.fit.edu/media/site-specific/researchfitedu/coast-climate-adaptation-library/middle-east/regional---middle-east/Elasha.-2010.-Mapping-of-CC-Threats--Human-Development-Impacts-In-The-Arab-Region.pdf meta: label: '4' + publicationType: journal - type: Article id: ref-5 authors: @@ -399,6 +403,7 @@ references: Development- Commission on Climate Change and Development meta: label: '5' + publicationType: journal - type: Article id: ref-6 authors: @@ -438,6 +443,7 @@ references: xerophytes in the hyper-arid northern united arab emirates. meta: label: '6' + publicationType: journal - type: Article id: ref-7 authors: @@ -480,6 +486,7 @@ references: Step towards Conservation. meta: label: '7' + publicationType: journal - type: Article id: ref-8 authors: @@ -497,6 +504,7 @@ references: url: https://www.ipcc.ch/site/assets/uploads/2018/05/ar4_wg1_full_report-1.pdf meta: label: '8' + publicationType: journal - type: Article id: ref-9 authors: @@ -518,6 +526,7 @@ references: https://pdfs.semanticscholar.org/dbee/e153dac2b70d2c3a237531bfa48f45aa9ec5.pdf meta: label: '9' + publicationType: journal - type: Article id: ref-10 authors: @@ -560,6 +569,7 @@ references: species. meta: label: '10' + publicationType: journal - type: Article id: ref-11 authors: @@ -599,6 +609,7 @@ references: title: Ensemble forecasting of species distributions. meta: label: '11' + publicationType: journal - type: Article id: ref-12 authors: @@ -639,6 +650,7 @@ references: h. riparia lour) in yunnan, China. meta: label: '12' + publicationType: journal - type: Article id: ref-13 authors: @@ -685,6 +697,7 @@ references: tectona grandis) in tropical asia: implications for forest management and planning. meta: label: '13' + publicationType: journal - type: Article id: ref-14 authors: @@ -722,6 +735,7 @@ references: indigenous forests. meta: label: '14' + publicationType: journal - type: Article id: ref-15 authors: @@ -764,6 +778,7 @@ references: planning. meta: label: '15' + publicationType: journal - type: Article id: ref-16 authors: @@ -804,6 +819,7 @@ references: title: Making better biogeographical predictions of species’ distributions. meta: label: '16' + publicationType: journal - type: Article id: ref-17 authors: @@ -846,6 +862,7 @@ references: a test case using cryptic geckos in madagascar. meta: label: '17' + publicationType: journal - type: Article id: ref-18 authors: @@ -885,6 +902,7 @@ references: for four major forest tree species in the Asia–Pacific region. meta: label: '18' + publicationType: journal - type: Article id: ref-19 authors: @@ -927,6 +945,7 @@ references: juniperus excelsa m. bieb. in the central and eastern alborz mountains, iran. meta: label: '19' + publicationType: journal - type: Article id: ref-20 authors: @@ -973,6 +992,7 @@ references: systematic conservation planning. meta: label: '20' + publicationType: journal - type: Article id: ref-21 authors: @@ -1021,6 +1041,7 @@ references: title: Predicting species distributions for conservation decisions. meta: label: '21' + publicationType: journal - type: Article id: ref-22 authors: @@ -1061,6 +1082,7 @@ references: title: Maximum entropy modeling of species geographic distributions. meta: label: '22' + publicationType: journal - type: Article id: ref-23 authors: @@ -1103,6 +1125,7 @@ references: different species distribution modeling methods. meta: label: '23' + publicationType: journal - type: Article id: ref-24 authors: @@ -1125,6 +1148,7 @@ references: title: Raxworthy cj, nakamura m, townsend peterson a. meta: label: '24' + publicationType: journal - type: Article id: ref-25 authors: @@ -1165,6 +1189,7 @@ references: title: Maximum entropy modeling of species geographic distributions. meta: label: '25' + publicationType: journal - type: Article id: ref-26 authors: @@ -1209,6 +1234,7 @@ references: title: Calotropis procera (ushaar) keratitis. meta: label: '26' + publicationType: journal - type: Article id: ref-27 authors: @@ -1244,6 +1270,7 @@ references: title: Artificial forests as conservation sites for the native flora of the uae. meta: label: '27' + publicationType: journal - type: Article id: ref-28 authors: @@ -1268,6 +1295,7 @@ references: title: The worldclim interpolated global terrestrial climate surfaces meta: label: '28' + publicationType: journal - type: Article id: ref-29 authors: @@ -1279,6 +1307,7 @@ references: title: Arcgis 10.1 meta: label: '29' + publicationType: journal - type: Article id: ref-30 authors: @@ -1318,6 +1347,7 @@ references: title: 'Rcp 4.5: a pathway for stabilization of radiative forcing by 2100.' meta: label: '30' + publicationType: journal - type: Article id: ref-31 authors: @@ -1358,6 +1388,7 @@ references: title: Very high resolution interpolated climate surfaces for global land areas. meta: label: '31' + publicationType: journal - type: Article id: ref-32 authors: @@ -1400,6 +1431,7 @@ references: data. meta: label: '32' + publicationType: journal - type: Article id: ref-33 authors: @@ -1451,6 +1483,7 @@ references: niche model predictions. meta: label: '33' + publicationType: journal - type: Article id: ref-34 authors: @@ -1486,6 +1519,7 @@ references: http://www.academicjournals.org/app/webroot/article/article1379515268_Kumar%20and%20Stohlgren.pdf meta: label: '34' + publicationType: journal - type: Article id: ref-35 authors: @@ -1528,6 +1562,7 @@ references: distribution models. meta: label: '35' + publicationType: journal - type: Article id: ref-36 authors: @@ -1581,6 +1616,7 @@ references: Prionailurus bengalensis) in India. meta: label: '36' + publicationType: journal - type: Article id: ref-37 authors: @@ -1621,6 +1657,7 @@ references: title: A statistical explanation of maxent for ecologists. meta: label: '37' + publicationType: journal - type: Article id: ref-38 authors: @@ -1659,6 +1696,7 @@ references: species distributions: an implementation with maxent. meta: label: '38' + publicationType: journal - type: Article id: ref-39 authors: @@ -1701,6 +1739,7 @@ references: and the true skill statistic (tss). meta: label: '39' + publicationType: journal - type: Article id: ref-40 authors: @@ -1740,6 +1779,7 @@ references: using maxent modeling. meta: label: '40' + publicationType: journal - type: Article id: ref-41 authors: @@ -1755,6 +1795,7 @@ references: url: https://figshare.com/articles/SURE2018_zip/8233328/1 meta: label: '41' + publicationType: journal - type: Article id: ref-42 authors: @@ -1806,6 +1847,7 @@ references: changes in water availability. meta: label: '42' + publicationType: journal - type: Article id: ref-43 authors: @@ -1849,6 +1891,7 @@ references: calotropis procera: an exotic and evergreen species in caatinga, brazilian semi-arid. meta: label: '43' + publicationType: journal - type: Article id: ref-44 authors: @@ -1866,6 +1909,7 @@ references: url: http://repo.mel.cgiar.org/handle/20.500.11766/4908 meta: label: '44' + publicationType: journal - type: Article id: ref-45 authors: @@ -1877,6 +1921,7 @@ references: title: State of Environment Report of the United Arab Emirates 2015 meta: label: '45' + publicationType: journal - type: Article id: ref-46 authors: @@ -1920,6 +1965,7 @@ references: deserts of the UAE. meta: label: '46' + publicationType: journal - type: Article id: ref-47 authors: @@ -1933,6 +1979,7 @@ references: https://www.moccae.gov.ae/assets/30e58e2e/national-climate-change-plan-for-the-united-arab-emirates-2017-2050.aspx meta: label: '47' + publicationType: journal title: Climate change-induced species distribution modeling in hyper-arid ecosystems meta: authorNotes: diff --git a/src/codecs/jats/__file_snapshots__/ijm-00202.yaml b/src/codecs/jats/__file_snapshots__/ijm-00202.yaml index fa8f805d6..0f7b2307a 100644 --- a/src/codecs/jats/__file_snapshots__/ijm-00202.yaml +++ b/src/codecs/jats/__file_snapshots__/ijm-00202.yaml @@ -165,6 +165,8 @@ references: pageEnd: 40 pageStart: 1 title: Gender-Based taxation and the division of family chores + meta: + publicationType: journal - type: Article id: bib3 authors: @@ -202,6 +204,8 @@ references: title: >- La segregación ocupacional de género y las diferencias en las remuneraciones de los asalariados privados. Uruguay, 1990-2000 + meta: + publicationType: journal - type: Article id: bib34 authors: @@ -237,6 +241,8 @@ references: pageEnd: 155 pageStart: 141 title: Gender bias in Tax systems based on household income + meta: + publicationType: journal - type: Article id: bib4 authors: @@ -257,6 +263,8 @@ references: type: Organization name: Cambridge University Press title: Public economics and the household + meta: + publicationType: book - type: Article id: bib5 authors: @@ -287,6 +295,8 @@ references: pageEnd: 323 pageStart: 297 title: Family labor supply, taxation and saving in an imperfect capital market + meta: + publicationType: journal - type: Article id: bib6 authors: @@ -319,6 +329,8 @@ references: title: >- Taxation of married couples in Germany and the UK: One-earner couples make the difference + meta: + publicationType: journal - type: Article id: bib7 authors: @@ -349,6 +361,8 @@ references: pageEnd: 140 pageStart: 121 title: 'Strengthening a fiscal Pillar: the Uruguayan dual income tax' + meta: + publicationType: journal - type: Article id: bib8 authors: @@ -371,6 +385,8 @@ references: title: >- Revealing Gender Gap Changes in Home Production and Labor Income in Uruguay WP 5/18 + meta: + publicationType: report - type: Article id: bib9 authors: @@ -396,6 +412,8 @@ references: pageEnd: 88 pageStart: 63 title: 'Salarios femeninos en Uruguay: ¿existe un techo de cristal?' + meta: + publicationType: journal - type: Article id: bib10 authors: @@ -413,6 +431,8 @@ references: title: >- ZOIB: Stata module to fit a zero-one inflated beta distribution by maximum likelihood + meta: + publicationType: journal - type: Article id: bib35 authors: @@ -439,6 +459,8 @@ references: tributarios Y encuestas de hogares para El período 2009-2011. Serie Documentos de Trabajo, DT 06/2014, Instituto de Economía, Facultad de Ciencias Económicas y Administración + meta: + publicationType: book - type: Article id: bib11 authors: @@ -472,6 +494,8 @@ references: de movilidad en el período 2009-2012, Serie Documentos de Trabajo, DT 03/2015, Instituto de Economía, Facultad de Ciencias Económicas y Administración + meta: + publicationType: book - type: Article id: bib12 authors: @@ -507,6 +531,8 @@ references: pageEnd: 867 pageStart: 860 title: Regression analysis of proportions in finance with self selection + meta: + publicationType: journal - type: Article id: bib13 authors: @@ -527,6 +553,8 @@ references: title: >- Budgeting for women´s rights: monitoring government budgets for compliance with CEDAW + meta: + publicationType: book - type: Article id: bib14 authors: @@ -549,6 +577,8 @@ references: title: >- Brechas salariales en Uruguay: género, segregación y desajustes por calificación + meta: + publicationType: journal - type: Article id: bib15 authors: @@ -579,6 +609,8 @@ references: title: >- Desigualdades persistentes: mercado de trabajo, calificación y género. El futuro en foco: Cuadernos sobre Desarrollo Humano + meta: + publicationType: book - type: Article id: bib16 authors: @@ -609,6 +641,8 @@ references: pageEnd: 815 pageStart: 799 title: Beta regression for modelling rates and proportions + meta: + publicationType: journal - type: Article id: bib17 authors: @@ -639,6 +673,8 @@ references: pageEnd: 456 pageStart: 436 title: Moving towards dual income taxation in Europe + meta: + publicationType: journal - type: Article id: bib20 authors: @@ -667,6 +703,8 @@ references: addressLocality: London name: Routledge title: Taxation and gender equality. A conceptual framework + meta: + publicationType: book - type: Article id: bib18 authors: @@ -687,6 +725,8 @@ references: type: CreativeWork name: Comparative Chapter. Non-published title: Gender Equity and Taxation in Latin America and the Caribbean + meta: + publicationType: report - type: Article id: bib19 authors: @@ -712,6 +752,8 @@ references: title: >- Taxation and Gender Equity: A comparative analysis of direct and indirect taxes in developing and developed countries + meta: + publicationType: book - type: Article id: bib21 authors: @@ -747,6 +789,8 @@ references: pageEnd: 1149 pageStart: 1113 title: Taxation and household labour supply + meta: + publicationType: journal - type: Article id: bib22 authors: @@ -779,6 +823,8 @@ references: title: >- Regression analysis of variates observed on (0, 1): percentages, proportions and fractions + meta: + publicationType: journal - type: Article id: bib23 authors: @@ -804,6 +850,8 @@ references: title: >- Tax reform and feminist theory in the United States: incorporating human connection + meta: + publicationType: journal - type: Article id: bib24 authors: @@ -834,6 +882,8 @@ references: pageEnd: 126 pageStart: 111 title: Inflated beta distributions + meta: + publicationType: journal - type: Article id: bib25 authors: @@ -864,6 +914,8 @@ references: pageEnd: 1623 pageStart: 1609 title: A general class of zero-or-one inflated beta regression models + meta: + publicationType: journal - type: Article id: bib26 authors: @@ -891,6 +943,8 @@ references: title: >- Maximum likelihood estimation of models with beta-distributed dependent variables + meta: + publicationType: journal - type: Article id: bib28 authors: @@ -930,6 +984,8 @@ references: addressLocality: London name: Routledge title: Gender equality and taxation in Argentina + meta: + publicationType: book - type: Article id: bib36 authors: @@ -950,6 +1006,8 @@ references: title: >- Equidad de género del sistema tributario en la Argentina: estimación de la carga fiscal desglosada por tipo de hogar + meta: + publicationType: journal - type: Article id: bib29 authors: @@ -982,6 +1040,8 @@ references: title: >- A better lemon squeezer? maximum-likelihood regression with beta-distributed dependent variables + meta: + publicationType: journal - type: Article id: bib30 authors: @@ -997,6 +1057,8 @@ references: type: CreativeWork name: IMF Working Paper, No. 96/99. title: Gender bias in Tax systems + meta: + publicationType: report title: >- Gendered effects of the personal income tax: Evidence from a schedular system with individual filing in Uruguay diff --git a/src/codecs/jats/__file_snapshots__/plosone-0091296.yaml b/src/codecs/jats/__file_snapshots__/plosone-0091296.yaml index 55d6ed6d7..854d09ec1 100644 --- a/src/codecs/jats/__file_snapshots__/plosone-0091296.yaml +++ b/src/codecs/jats/__file_snapshots__/plosone-0091296.yaml @@ -199,6 +199,7 @@ references: functioning in reef fishes meta: label: '1' + publicationType: journal - type: Article id: pone-0091296-Cinner1 authors: @@ -238,6 +239,7 @@ references: on the condition of coral reef fisheries meta: label: '2' + publicationType: journal - type: Article id: pone-0091296-SadovydeMitcheson1 authors: @@ -284,6 +286,7 @@ references: extinction risks in a billion dollar fishery meta: label: '3' + publicationType: journal - type: Article id: pone-0091296-Parrish1 authors: @@ -306,6 +309,7 @@ references: title: Using behaviour and ecology to exploit schooling fishes meta: label: '4' + publicationType: journal - type: Article id: pone-0091296-Pitcher1 authors: [] @@ -315,6 +319,7 @@ references: editors. Encyclopaedia of Ocean Sciences. UK, Academic Press. pp. 975–987. meta: label: '5' + publicationType: book - type: Article id: pone-0091296-Hamilton1 authors: [] @@ -326,6 +331,7 @@ references: Nature Conservancy. TNC Pacific Island Countries Report No. 4/04. meta: label: '6' + publicationType: other - type: Article id: pone-0091296-Aswani1 authors: @@ -353,6 +359,7 @@ references: title: 'Lagoon ecology and social strategies: habitat diversity and ethnobiology' meta: label: '7' + publicationType: journal - type: Article id: pone-0091296-Claro1 authors: @@ -394,6 +401,7 @@ references: management interventions on important reef fishes from 1960–2005 meta: label: '8' + publicationType: journal - type: Article id: pone-0091296-Hamilton2 authors: @@ -428,6 +436,7 @@ references: aggregations in the Coral Triangle meta: label: '9' + publicationType: journal - type: Article id: pone-0091296-MatosCaraballo1 authors: @@ -462,6 +471,7 @@ references: (Mycteroperca tigris) at Vieques Island, Puerto Rico meta: label: '10' + publicationType: journal - type: Article id: pone-0091296-Robinson1 authors: @@ -502,6 +512,7 @@ references: Seychelles meta: label: '11' + publicationType: journal - type: Article id: pone-0091296-Domeier1 authors: @@ -529,6 +540,7 @@ references: title: 'Tropical reef fish spawning aggregations: defined and reviewed' meta: label: '12' + publicationType: journal - type: Article id: pone-0091296-SadovydeMitcheson2 authors: @@ -573,6 +585,7 @@ references: title: A global baseline for spawning aggregations of reef fishes meta: label: '13' + publicationType: journal - type: Article id: pone-0091296-Wilberg1 authors: @@ -612,6 +625,7 @@ references: assessment models meta: label: '14' + publicationType: journal - type: Article id: pone-0091296-Rhodes1 authors: @@ -651,6 +665,7 @@ references: brown-marbled grouper, Epinephelus fuscoguttatus (Forsskål, 1775) meta: label: '15' + publicationType: journal - type: Article id: pone-0091296-Bijoux1 authors: @@ -695,6 +710,7 @@ references: a herbivorous tropical reef fish, Siganus sutor meta: label: '16' + publicationType: journal - type: Article id: pone-0091296-Meyer1 authors: @@ -725,6 +741,7 @@ references: reserve meta: label: '17' + publicationType: journal - type: Article id: pone-0091296-Hitt1 authors: @@ -760,6 +777,7 @@ references: Islands meta: label: '18' + publicationType: journal - type: Article id: pone-0091296-Johannes1 authors: @@ -791,6 +809,7 @@ references: Islands, concerning fish aggregating behaviour meta: label: '19' + publicationType: journal - type: Article id: pone-0091296-Christie1 authors: @@ -820,6 +839,7 @@ references: from central to community orientation meta: label: '20' + publicationType: journal - type: Article id: pone-0091296-AguilarPerera1 authors: @@ -844,6 +864,7 @@ references: Mexican Caribbean Coast meta: label: '21' + publicationType: journal - type: Article id: pone-0091296-Cinner2 authors: @@ -868,6 +889,7 @@ references: lessons from long-enduring customary management systems meta: label: '22' + publicationType: journal - type: Article id: pone-0091296-Daw1 authors: @@ -902,6 +924,7 @@ references: catch monitoring, underwater visual census and fishers' knowledge meta: label: '23' + publicationType: journal - type: Article id: pone-0091296-Aswani2 authors: @@ -926,6 +949,7 @@ references: Islands: resource management or optimal foraging meta: label: '24' + publicationType: journal - type: Article id: pone-0091296-Connell1 authors: @@ -955,6 +979,7 @@ references: predatory fish at One Tree Reef, Australia meta: label: '25' + publicationType: journal - type: Article id: pone-0091296-Choat1 authors: [] @@ -965,6 +990,7 @@ references: Springer. pp. 85–116. meta: label: '26' + publicationType: book - type: Article id: pone-0091296-Heyman1 authors: @@ -994,12 +1020,14 @@ references: aggregations at Gladden Spit, Belize meta: label: '27' + publicationType: journal - type: Article id: pone-0091296-Matlin1 authors: [] title: 'Matlin MW (2005) Cognition. Hoboken: Wiley.' meta: label: '28' + publicationType: book - type: Article id: pone-0091296-Sadovy1 authors: @@ -1027,6 +1055,7 @@ references: title: Are aggregation-fisheries sustainable? Reef fish fisheries as a case study meta: label: '29' + publicationType: journal - type: Article id: pone-0091296-Hobday1 authors: @@ -1069,6 +1098,7 @@ references: title: Ecological risk assessment for the effects of fishing meta: label: '30' + publicationType: journal - type: Article id: pone-0091296-Patrick1 authors: @@ -1113,6 +1143,7 @@ references: of United States fish stocks to overfishing meta: label: '31' + publicationType: journal - type: Article id: pone-0091296-Froese1 authors: [] @@ -1122,6 +1153,7 @@ references: url: http://www.fishbase.org meta: label: '32' + publicationType: other - type: Article id: pone-0091296-ArregunSnchez1 authors: @@ -1144,6 +1176,7 @@ references: title: 'Catchability: a key parameter for fish stock assessment' meta: label: '33' + publicationType: journal - type: Article id: pone-0091296-Cinner3 authors: @@ -1186,6 +1219,7 @@ references: title: Linking social and ecological systems to sustain coral reef fisheries meta: label: '34' + publicationType: journal - type: Article id: pone-0091296-Samoilys1 authors: @@ -1230,6 +1264,7 @@ references: Africa meta: label: '35' + publicationType: journal - type: Article id: pone-0091296-Feary1 authors: @@ -1269,6 +1304,7 @@ references: success, and underwater visual surveys meta: label: '36' + publicationType: journal - type: Article id: pone-0091296-Cinner4 authors: @@ -1303,6 +1339,7 @@ references: at Ahus Island, Papua New Guinea meta: label: '37' + publicationType: journal - type: Article id: pone-0091296-Crona1 authors: @@ -1326,6 +1363,7 @@ references: among resource users in a Kenyan seascape meta: label: '38' + publicationType: journal - type: Article id: pone-0091296-Davis1 authors: @@ -1355,6 +1393,7 @@ references: local ecological knowledge meta: label: '39' + publicationType: journal - type: Article id: pone-0091296-Jacquet1 authors: @@ -1382,6 +1421,7 @@ references: title: 'Funding priorities: big barriers to small-scale fisheries' meta: label: '40' + publicationType: journal - type: Article id: pone-0091296-Newton1 authors: @@ -1424,6 +1464,7 @@ references: title: Current and future sustainability of island coral reef fisheries meta: label: '41' + publicationType: journal - type: Article id: pone-0091296-Mangi1 authors: @@ -1453,6 +1494,7 @@ references: coral reef ecosystems meta: label: '42' + publicationType: journal - type: Article id: pone-0091296-Corpuz1 authors: @@ -1487,6 +1529,7 @@ references: fishing gear meta: label: '43' + publicationType: journal - type: Article id: pone-0091296-Benjamini1 authors: @@ -1516,6 +1559,7 @@ references: multiple testing meta: label: '44' + publicationType: journal - type: Article id: pone-0091296-Legendre1 authors: [] @@ -1524,6 +1568,7 @@ references: Elsevier. meta: label: '45' + publicationType: book - type: Article id: pone-0091296-Johannes2 authors: @@ -1546,6 +1591,7 @@ references: title: Traditional marine conservation methods in Oceania and their demise meta: label: '46' + publicationType: journal - type: Article id: pone-0091296-Colding1 authors: @@ -1575,6 +1621,7 @@ references: biological conservation meta: label: '47' + publicationType: journal - type: Article id: pone-0091296-Carrier1 authors: @@ -1597,6 +1644,7 @@ references: title: Fishing practices on Ponam Island (Manus Province, Papua New Guinea) meta: label: '48' + publicationType: journal - type: Article id: pone-0091296-Carrier2 authors: [] @@ -1607,6 +1655,7 @@ references: 143–167. meta: label: '49' + publicationType: book - type: Article id: pone-0091296-Newman1 authors: @@ -1637,6 +1686,7 @@ references: central Great Barrier Reef meta: label: '50' + publicationType: journal - type: Article id: pone-0091296-McClanahan1 authors: @@ -1666,6 +1716,7 @@ references: artisanal coral reef fishery of Papua New Guinea meta: label: '51' + publicationType: journal - type: Article id: pone-0091296-Grandcourt1 authors: @@ -1702,6 +1753,7 @@ references: fulviflamma (Forsskål, 1775), in the southern Arabian Gulf meta: label: '52' + publicationType: journal - type: Article id: pone-0091296-Claydon1 authors: @@ -1726,6 +1778,7 @@ references: threats and management meta: label: '53' + publicationType: journal - type: Article id: pone-0091296-Rhodes2 authors: @@ -1755,6 +1808,7 @@ references: (Plectropomus areolatus) to fishing meta: label: '54' + publicationType: journal - type: Article id: pone-0091296-Ebisawa1 authors: @@ -1779,6 +1833,7 @@ references: waters off the Ryukyu Islands meta: label: '55' + publicationType: journal - type: Article id: pone-0091296-Nanami1 authors: @@ -1808,6 +1863,7 @@ references: thumbprint emperor Lethrinus harak (Lethrinidae) meta: label: '56' + publicationType: journal - type: Article id: pone-0091296-Johannes3 authors: [] @@ -1816,6 +1872,7 @@ references: Palau District of Micronesia. Berkley, CA: University of California Press. meta: label: '57' + publicationType: book - type: Article id: pone-0091296-Parrish2 authors: [] @@ -1825,6 +1882,7 @@ references: and fisheries management. Boulder, Colorado: Westview Press. pp. 405–463. meta: label: '58' + publicationType: book - type: Article id: pone-0091296-KaundaArara1 authors: @@ -1854,6 +1912,7 @@ references: fisheries in coastal Kenya meta: label: '59' + publicationType: journal - type: Article id: pone-0091296-Jennings1 authors: @@ -1886,6 +1945,7 @@ references: title: Life history correlates of responses to fisheries exploitation meta: label: '60' + publicationType: journal - type: Article id: pone-0091296-Cinner5 authors: @@ -1922,6 +1982,7 @@ references: title: Periodic closures as adaptive coral reef management in the Indo-Pacific meta: label: '61' + publicationType: journal title: >- The Influence of Fisher Knowledge on the Susceptibility of Reef Fish Aggregations to Fishing diff --git a/src/codecs/jats/__file_snapshots__/plosone-0093988.yaml b/src/codecs/jats/__file_snapshots__/plosone-0093988.yaml index bbaf6448a..f4fc83ce2 100644 --- a/src/codecs/jats/__file_snapshots__/plosone-0093988.yaml +++ b/src/codecs/jats/__file_snapshots__/plosone-0093988.yaml @@ -150,12 +150,14 @@ references: title: 'Social dilemmas: The anatomy of cooperation' meta: label: '1' + publicationType: journal - type: Article id: pone-0093988-Axelrod1 authors: [] title: Axelrod R (2006) The Evolution of Cooperation. Basic books. meta: label: '2' + publicationType: other - type: Article id: pone-0093988-Hardin1 authors: @@ -178,6 +180,7 @@ references: title: The tragedy of the commons meta: label: '3' + publicationType: journal - type: Article id: pone-0093988-Flood1 authors: @@ -200,6 +203,7 @@ references: title: Some experimental games meta: label: '4' + publicationType: journal - type: Article id: pone-0093988-Hamilton1 authors: @@ -227,6 +231,7 @@ references: title: The evolution of cooperation meta: label: '5' + publicationType: journal - type: Article id: pone-0093988-MaynardSmith1 authors: [] @@ -235,6 +240,7 @@ references: University Press. meta: label: '6' + publicationType: other - type: Article id: pone-0093988-Skyrms1 authors: [] @@ -243,6 +249,7 @@ references: Cambridge University Press. meta: label: '7' + publicationType: other - type: Article id: pone-0093988-Isaac1 authors: @@ -272,6 +279,7 @@ references: mechanism meta: label: '8' + publicationType: journal - type: Article id: pone-0093988-Fehr1 authors: @@ -299,6 +307,7 @@ references: title: Altruistic punishment in humans meta: label: '9' + publicationType: journal - type: Article id: pone-0093988-Killingback1 authors: @@ -335,6 +344,7 @@ references: cooperation meta: label: '10' + publicationType: journal - type: Article id: pone-0093988-Doebeli1 authors: @@ -367,6 +377,7 @@ references: title: The evolutionary origin of cooperators and defectors meta: label: '11' + publicationType: journal - type: Article id: pone-0093988-Killingback2 authors: @@ -399,6 +410,7 @@ references: title: Cooperation and defection in the tragedy of the commons meta: label: '12' + publicationType: journal - type: Article id: pone-0093988-Killingback3 authors: @@ -435,6 +447,7 @@ references: commons meta: label: '13' + publicationType: journal - type: Article id: pone-0093988-Holt1 authors: @@ -462,6 +475,7 @@ references: title: 'The Nash equilibrium: A perspective' meta: label: '14' + publicationType: journal - type: Article id: pone-0093988-Basu1 authors: @@ -484,6 +498,7 @@ references: title: 'The traveler''s dilemma: Paradoxes of rationality in game theory' meta: label: '15' + publicationType: journal - type: Article id: pone-0093988-Basu2 authors: @@ -506,6 +521,7 @@ references: title: The traveler's dilemma meta: label: '16' + publicationType: journal - type: Article id: pone-0093988-Goeree1 authors: @@ -533,6 +549,7 @@ references: title: Ten little treasures of game theory and ten intuitive contradictions meta: label: '17' + publicationType: journal - type: Article id: pone-0093988-VanHuyck1 authors: @@ -566,6 +583,7 @@ references: title: Tacit coordination games, strategic uncertainty, and coordination failure meta: label: '18' + publicationType: journal - type: Article id: pone-0093988-Capra1 authors: @@ -603,6 +621,7 @@ references: title: Anomalous behavior in a traveler's dilemma? meta: label: '19' + publicationType: journal - type: Article id: pone-0093988-Goeree2 authors: @@ -630,6 +649,7 @@ references: title: 'Stochastic game theory: For playing games, not just for doing theory' meta: label: '20' + publicationType: journal - type: Article id: pone-0093988-Becker1 authors: [] @@ -638,6 +658,7 @@ references: Inst. für Volkswirtschaftslehre, Univ. meta: label: '21' + publicationType: other - type: Article id: pone-0093988-Basu3 authors: @@ -672,6 +693,7 @@ references: implicit collusion meta: label: '22' + publicationType: journal - type: Article id: pone-0093988-Hofbauer1 authors: [] @@ -680,6 +702,7 @@ references: Cambridge University Press. meta: label: '23' + publicationType: other - type: Article id: pone-0093988-Manapat1 authors: @@ -717,6 +740,7 @@ references: title: Stochastic evolutionary dynamics resolve the Traveler's Dilemma meta: label: '24' + publicationType: journal - type: Article id: pone-0093988-Riehl1 authors: @@ -741,6 +765,7 @@ references: communally nesting bird meta: label: '25' + publicationType: journal - type: Article id: pone-0093988-Riehl2 authors: @@ -770,6 +795,7 @@ references: Greater (Ani Crotophaga) major at Gatún Lake, Panama meta: label: '26' + publicationType: journal - type: Article id: pone-0093988-Bryant1 authors: @@ -792,6 +818,7 @@ references: title: A simple rational expectations Keynes-type model meta: label: '27' + publicationType: journal - type: Article id: pone-0093988-Anderson1 authors: @@ -826,6 +853,7 @@ references: equilibrium meta: label: '28' + publicationType: journal - type: Article id: pone-0093988-Halpern1 authors: @@ -853,6 +881,7 @@ references: title: 'Iterated regret minimization: A new solution concept' meta: label: '29' + publicationType: journal - type: Article id: pone-0093988-Capraro1 authors: @@ -874,6 +903,7 @@ references: title: A model of human cooperation in social dilemmas meta: label: '30' + publicationType: journal - type: Article id: pone-0093988-Capraro2 authors: @@ -913,6 +943,7 @@ references: title: Cooperative equilibria in iterated social dilemmas meta: label: '31' + publicationType: journal - type: Article id: pone-0093988-Li1 authors: @@ -944,6 +975,7 @@ references: title: Evolution of cooperation in spatial Traveler's Dilemma game meta: label: '32' + publicationType: journal - type: Article id: pone-0093988-Camerer1 authors: @@ -976,6 +1008,7 @@ references: title: A cognitive hierarchy model of games meta: label: '33' + publicationType: journal - type: Article id: pone-0093988-CostaGomes1 authors: @@ -1008,6 +1041,7 @@ references: title: 'Cognition and Behavior in Normal-Form Games: An Experimental Study' meta: label: '34' + publicationType: journal - type: Article id: pone-0093988-McKelvey1 authors: @@ -1035,6 +1069,7 @@ references: title: Quantal response equilibria for normal form games meta: label: '35' + publicationType: journal - type: Article id: pone-0093988-Stahl1 authors: @@ -1062,6 +1097,7 @@ references: title: Experimental evidence on players' models of other players meta: label: '36' + publicationType: journal - type: Article id: pone-0093988-Wright1 authors: [] @@ -1071,12 +1107,14 @@ references: Conference on Artificial Intelligenc: 901–907. meta: label: '37' + publicationType: other - type: Article id: pone-0093988-Tirole1 authors: [] title: Tirole J (1988) The Theory of Industrial Organization. MIT press. meta: label: '38' + publicationType: other - type: Article id: pone-0093988-Metz1 authors: @@ -1122,6 +1160,7 @@ references: faithful reproduction meta: label: '39' + publicationType: journal - type: Article id: pone-0093988-Geritz1 authors: @@ -1159,6 +1198,7 @@ references: title: Dynamics of adaptation and evolutionary branching meta: label: '40' + publicationType: journal - type: Article id: pone-0093988-Geritz2 authors: @@ -1193,6 +1233,7 @@ references: of the evolutionary tree meta: label: '41' + publicationType: journal - type: Article id: pone-0093988-Nowak1 authors: @@ -1220,6 +1261,7 @@ references: title: Evolutionary games and spatial chaos meta: label: '42' + publicationType: journal - type: Article id: pone-0093988-Killingback4 authors: @@ -1249,6 +1291,7 @@ references: title: 'Spatial evolutionary game theory: Hawks and Doves revisited' meta: label: '43' + publicationType: journal - type: Article id: pone-0093988-Nakamaru1 authors: @@ -1281,6 +1324,7 @@ references: title: The evolution of cooperation in a lattice-structured population meta: label: '44' + publicationType: journal - type: Article id: pone-0093988-VanBaalen1 authors: @@ -1309,6 +1353,7 @@ references: title: The unit of selection in viscous populations and the evolution of altruism meta: label: '45' + publicationType: journal - type: Article id: pone-0093988-Ifti1 authors: @@ -1343,6 +1388,7 @@ references: Prisoner's Dilemma meta: label: '46' + publicationType: journal - type: Article id: pone-0093988-Hauert1 authors: @@ -1372,6 +1418,7 @@ references: snowdrift game meta: label: '47' + publicationType: journal - type: Article id: pone-0093988-Santos1 authors: @@ -1401,6 +1448,7 @@ references: cooperation meta: label: '48' + publicationType: journal - type: Article id: pone-0093988-Ohtsuki1 authors: @@ -1440,6 +1488,7 @@ references: networks meta: label: '49' + publicationType: journal - type: Article id: pone-0093988-Szabo1 authors: @@ -1467,6 +1516,7 @@ references: title: Evolutionary games on graphs meta: label: '50' + publicationType: journal - type: Article id: pone-0093988-Watts1 authors: @@ -1494,6 +1544,7 @@ references: title: Collective dynamics of ‘small-world’ networks meta: label: '51' + publicationType: journal - type: Article id: pone-0093988-Barabsi1 authors: @@ -1521,6 +1572,7 @@ references: title: Emergence of scaling in random networks meta: label: '52' + publicationType: journal - type: Article id: pone-0093988-Albert1 authors: @@ -1548,12 +1600,14 @@ references: title: Statistical mechanics of complex networks meta: label: '53' + publicationType: journal - type: Article id: pone-0093988-Newman1 authors: [] title: 'Newman M (2010) Networks: An Introduction. Oxford University Press.' meta: label: '54' + publicationType: other - type: Article id: pone-0093988-Dufwenberg1 authors: @@ -1581,6 +1635,7 @@ references: title: 'Price competition and market concentration: an experimental study' meta: label: '55' + publicationType: journal title: >- An Application of Evolutionary Game Theory to Social Dilemmas: The Traveler's Dilemma and the Minimum Effort Coordination Game diff --git a/src/codecs/jats/__file_snapshots__/plosone-0178565.yaml b/src/codecs/jats/__file_snapshots__/plosone-0178565.yaml index 8019dac13..04dc1ba4b 100644 --- a/src/codecs/jats/__file_snapshots__/plosone-0178565.yaml +++ b/src/codecs/jats/__file_snapshots__/plosone-0178565.yaml @@ -203,6 +203,7 @@ references: title: Estimates of global cyanobacterial biomass and its distribution meta: label: '1' + publicationType: journal - type: Article id: pone-0178565-ref002 authors: @@ -220,6 +221,7 @@ references: title: 'Ecology of Cyanobacteria II: Their Diversity in Space and Time' meta: label: '2' + publicationType: book - type: Article id: pone-0178565-ref003 authors: @@ -270,6 +272,7 @@ references: title: Unicellular cyanobacteria fix N2 in the subtropical North Pacific Ocean meta: label: '3' + publicationType: journal - type: Article id: pone-0178565-ref004 authors: @@ -317,6 +320,7 @@ references: turbulent and highly aerobic conditions meta: label: '4' + publicationType: journal - type: Article id: pone-0178565-ref005 authors: @@ -369,6 +373,7 @@ references: genome sequencing meta: label: '5' + publicationType: journal - type: Article id: pone-0178565-ref006 authors: @@ -416,6 +421,7 @@ references: cyanobacteria meta: label: '6' + publicationType: journal - type: Article id: pone-0178565-ref007 authors: @@ -446,6 +452,7 @@ references: title: 'Genome evolution in cyanobacteria: the stable core and the variable shell' meta: label: '7' + publicationType: journal - type: Article id: pone-0178565-ref008 authors: @@ -487,6 +494,7 @@ references: phototrophic microorganisms meta: label: '8' + publicationType: journal - type: Article id: pone-0178565-ref009 authors: @@ -527,6 +535,7 @@ references: title: Cyanobacterial conversion of carbon dioxide to 2, 3-butanediol meta: label: '9' + publicationType: journal - type: Article id: pone-0178565-ref010 authors: @@ -558,6 +567,7 @@ references: title: Cyanobacteria as a platform for biofuel production meta: label: '10' + publicationType: journal - type: Article id: pone-0178565-ref011 authors: @@ -583,6 +593,7 @@ references: title: Metabolic fluxes and metabolic engineering meta: label: '11' + publicationType: journal - type: Article id: pone-0178565-ref012 authors: @@ -635,6 +646,7 @@ references: in Escherichia coli meta: label: '12' + publicationType: journal - type: Article id: pone-0178565-ref013 authors: @@ -687,6 +699,7 @@ references: levels of mutagenesis: application to Mycobacterium tuberculosis meta: label: '13' + publicationType: journal - type: Article id: pone-0178565-ref014 authors: @@ -718,6 +731,7 @@ references: aureus N315: an initial draft to the two-dimensional annotation meta: label: '14' + publicationType: journal - type: Article id: pone-0178565-ref015 authors: @@ -743,6 +757,7 @@ references: title: The minimal cell genome:" on being the right size" meta: label: '15' + publicationType: journal - type: Article id: pone-0178565-ref016 authors: @@ -793,6 +808,7 @@ references: title: Functional profiling of the Saccharomyces cerevisiae genome meta: label: '16' + publicationType: journal - type: Article id: pone-0178565-ref017 authors: @@ -823,6 +839,7 @@ references: title: Genome-wide screening for gene function using RNAi in mammalian cells meta: label: '17' + publicationType: journal - type: Article id: pone-0178565-ref018 authors: @@ -873,6 +890,7 @@ references: title: The essential gene set of a photosynthetic organism meta: label: '18' + publicationType: journal - type: Article id: pone-0178565-ref019 authors: @@ -913,6 +931,7 @@ references: title: Lethality and centrality in protein networks meta: label: '19' + publicationType: journal - type: Article id: pone-0178565-ref020 authors: @@ -955,6 +974,7 @@ references: characterization of cellular state meta: label: '20' + publicationType: journal - type: Article id: pone-0178565-ref021 authors: @@ -976,6 +996,7 @@ references: constraint-based approaches meta: label: '21' + publicationType: journal - type: Article id: pone-0178565-ref022 authors: @@ -1010,6 +1031,7 @@ references: title: Genome‐scale gene/reaction essentiality and synthetic lethality analysis meta: label: '22' + publicationType: journal - type: Article id: pone-0178565-ref023 authors: @@ -1049,6 +1071,7 @@ references: distribution and network modification for enhanced biofuel production meta: label: '23' + publicationType: journal - type: Article id: pone-0178565-ref024 authors: @@ -1091,6 +1114,7 @@ references: conditions meta: label: '24' + publicationType: journal - type: Article id: pone-0178565-ref025 authors: @@ -1136,6 +1160,7 @@ references: title: Whole-genome analysis of photosynthetic prokaryotes meta: label: '25' + publicationType: journal - type: Article id: pone-0178565-ref026 authors: @@ -1172,6 +1197,7 @@ references: and adaptive traits meta: label: '26' + publicationType: journal - type: Article id: pone-0178565-ref027 authors: @@ -1219,6 +1245,7 @@ references: phylogenetic profiles meta: label: '27' + publicationType: journal - type: Article id: pone-0178565-ref028 authors: @@ -1264,6 +1291,7 @@ references: title: 'CD-HIT: accelerated for clustering the next-generation sequencing data' meta: label: '28' + publicationType: journal - type: Article id: pone-0178565-ref029 authors: @@ -1304,6 +1332,7 @@ references: title: A global analysis of adaptive evolution of operons in cyanobacteria meta: label: '29' + publicationType: journal - type: Article id: pone-0178565-ref030 authors: @@ -1352,6 +1381,7 @@ references: biosynthetic enzyme in bacteria meta: label: '30' + publicationType: journal - type: Article id: pone-0178565-ref031 authors: @@ -1404,6 +1434,7 @@ references: Pseudomonas fluorescens 2–79 meta: label: '31' + publicationType: journal - type: Article id: pone-0178565-ref032 authors: @@ -1458,6 +1489,7 @@ references: Pseudomonas fluorescens meta: label: '32' + publicationType: journal - type: Article id: pone-0178565-ref033 authors: @@ -1488,6 +1520,7 @@ references: title: Circadian rhythms in cyanobacteria meta: label: '33' + publicationType: journal - type: Article id: pone-0178565-ref034 authors: @@ -1536,6 +1569,7 @@ references: Cyanothece sp. ATCC 51142 under constant light meta: label: '34' + publicationType: journal - type: Article id: pone-0178565-ref035 authors: @@ -1586,6 +1620,7 @@ references: title: Cyanobacterial signature genes meta: label: '35' + publicationType: journal - type: Article id: pone-0178565-ref036 authors: @@ -1629,6 +1664,7 @@ references: plastoquinone pool meta: label: '36' + publicationType: journal - type: Article id: pone-0178565-ref037 authors: @@ -1681,6 +1717,7 @@ references: absence of low molecular mass subunits PsbL and PsbJ meta: label: '37' + publicationType: journal - type: Article id: pone-0178565-ref038 authors: @@ -1734,6 +1771,7 @@ references: α‐tocopherol quinone meta: label: '38' + publicationType: journal - type: Article id: pone-0178565-ref039 authors: @@ -1777,6 +1815,7 @@ references: enterobactin from chorismate meta: label: '39' + publicationType: journal - type: Article id: pone-0178565-ref040 authors: @@ -1817,6 +1856,7 @@ references: title: Amino acid sequence homology among fructose-1, 6-bisphosphatases meta: label: '40' + publicationType: journal - type: Article id: pone-0178565-ref041 authors: @@ -1849,6 +1889,7 @@ references: PCC 7942 gene (gnd) encoding 6-phosphogluconate dehydrogenase meta: label: '41' + publicationType: journal - type: Article id: pone-0178565-ref042 authors: @@ -1878,6 +1919,7 @@ references: title: Gas vesicle proteins meta: label: '42' + publicationType: journal - type: Article id: pone-0178565-ref043 authors: @@ -1915,6 +1957,7 @@ references: Halobacterium halobium plasmid pNRC100 meta: label: '43' + publicationType: journal - type: Article id: pone-0178565-ref044 authors: @@ -1942,6 +1985,7 @@ references: ATPase meta: label: '44' + publicationType: journal - type: Article id: pone-0178565-ref045 authors: @@ -1984,6 +2028,7 @@ references: resistance pump meta: label: '45' + publicationType: journal - type: Article id: pone-0178565-ref046 authors: @@ -2007,6 +2052,7 @@ references: title: Functional promiscuity of homologues of the bacterial ArsA ATPases meta: label: '46' + publicationType: journal - type: Article id: pone-0178565-ref047 authors: @@ -2054,6 +2100,7 @@ references: analogies with eukaryotic RNAi, and hypothetical mechanisms of action meta: label: '47' + publicationType: journal - type: Article id: pone-0178565-ref048 authors: @@ -2096,6 +2143,7 @@ references: Cas3 protein meta: label: '48' + publicationType: journal title: >- Gene essentiality, conservation index and co-evolution of genes in cyanobacteria diff --git a/src/codecs/jats/index.ts b/src/codecs/jats/index.ts index f5110b578..2c0fa815e 100644 --- a/src/codecs/jats/index.ts +++ b/src/codecs/jats/index.ts @@ -1506,7 +1506,14 @@ export function decodeReference( publisher, identifiers, url, - meta, + meta: { + ...meta, + ...(publicationType + ? { + publicationType, + } + : {}), + }, }) } diff --git a/src/codecs/jats/jats.test.ts b/src/codecs/jats/jats.test.ts index b46e1e1eb..a93a35fda 100644 --- a/src/codecs/jats/jats.test.ts +++ b/src/codecs/jats/jats.test.ts @@ -186,6 +186,9 @@ test.each([ name: 'International journal of molecular sciences', type: 'Periodical', }, + meta: { + publicationType: 'journal', + }, pageStart: 21, title: 'Deferasirox-Dependent Iron Chelation Enhances Mitochondrial Dysfunction and Restores p53 Signaling by Stabilization of p53 Family Members in Leukemic Cells', type: 'Article' @@ -224,6 +227,9 @@ test.each([ type: "Date", value: "2019" }, + meta: { + publicationType: "other" + }, title: "YfmK is a Novel Nε-lysine Acetyltransferase that Directly Acetylates the Histone-like Protein HBsu in Bacillus Subtilis", type: "Article" },