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environment.yml
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environment.yml
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name: thesis-workflow
channels:
- conda-forge
- bioconda
- defaults
dependencies:
- aioeasywebdav=2.4.0=py39hde42818_1001
- aiohttp=3.7.4.post0=py39h89e85a6_0
- amply=0.1.4=py_0
- appdirs=1.4.4=pyh9f0ad1d_0
- async-timeout=3.0.1=py_1000
- atk-1.0=2.36.0=he69c4ee_4
- attmap=0.13.0=pyhd8ed1ab_0
- attrs=21.2.0=pyhd8ed1ab_0
- backports=1.0=py_2
- backports.functools_lru_cache=1.6.4=pyhd8ed1ab_0
- bcrypt=3.2.0=py39hcbf5805_1
- boto3=1.17.98=pyhd8ed1ab_0
- botocore=1.20.98=pyhd8ed1ab_0
- brotlipy=0.7.0=py39hcbf5805_1001
- bzip2=1.0.8=hc929b4f_4
- c-ares=1.17.1=h0d85af4_1
- ca-certificates=2021.5.30=h033912b_0
- cachetools=4.2.2=pyhd8ed1ab_0
- cairo=1.16.0=he43a7df_1008
- certifi=2021.5.30=py39h6e9494a_0
- cffi=1.14.5=py39h319c39b_0
- chardet=4.0.0=py39h6e9494a_1
- coincbc=2.10.5=he839f3e_1
- configargparse=1.4.1=pyhd8ed1ab_0
- connection_pool=0.0.3=pyhd3deb0d_0
- cryptography=3.4.7=py39ha2c9959_0
- datrie=0.8.2=py39h89e85a6_2
- decorator=4.4.2=py_0
- docutils=0.17.1=py39h6e9494a_0
- dropbox=11.11.0=pyhd8ed1ab_0
- expat=2.4.1=he49afe7_0
- fastp=0.20.1=hfd59bb5_1
- fftw=3.3.9=nompi_hf0880f0_101
- filechunkio=1.8=py_2
- filelock=3.0.12=pyh9f0ad1d_0
- font-ttf-dejavu-sans-mono=2.37=hab24e00_0
- font-ttf-inconsolata=3.000=h77eed37_0
- font-ttf-source-code-pro=2.038=h77eed37_0
- font-ttf-ubuntu=0.83=hab24e00_0
- fontconfig=2.13.1=h10f422b_1005
- fonts-conda-ecosystem=1=0
- fonts-conda-forge=1=0
- freetype=2.10.4=h4cff582_1
- fribidi=1.0.10=hbcb3906_0
- ftputil=5.0.1=pyhd8ed1ab_0
- gdk-pixbuf=2.42.6=h2e6141f_0
- gettext=0.21.0=h7535e17_0
- ghostscript=9.54.0=he49afe7_1
- giflib=5.2.1=hbcb3906_2
- gitdb=4.0.7=pyhd8ed1ab_0
- gitpython=3.1.18=pyhd8ed1ab_0
- google-api-core=1.30.0=pyhd8ed1ab_0
- google-api-python-client=2.9.0=pyhd8ed1ab_0
- google-auth=1.31.0=pyhd3eb1b0_0
- google-auth-httplib2=0.1.0=pyhd8ed1ab_0
- google-cloud-core=1.7.0=pyh6c4a22f_0
- google-cloud-storage=1.38.0=pyh44b312d_0
- google-crc32c=1.1.2=py39he650545_0
- google-resumable-media=1.3.0=pyh6c4a22f_0
- googleapis-common-protos=1.53.0=py39h6e9494a_0
- graphite2=1.3.14=h38d11af_0
- graphviz=2.47.3=h77de9ca_0
- grpcio=1.38.0=py39hb974310_0
- gtk2=2.24.33=h675d97a_1
- gts=0.7.6=hccb3bdf_2
- harfbuzz=2.8.1=h159f659_0
- htslib=1.12=hc38c3fb_1
- httplib2=0.19.1=pyhd8ed1ab_0
- icu=68.1=h74dc148_0
- idna=2.10=pyh9f0ad1d_0
- imagemagick=7.1.0_1=pl5321h3e49128_0
- importlib-metadata=4.5.0=py39h6e9494a_0
- iniconfig=1.1.1=pyh9f0ad1d_0
- ipython_genutils=0.2.0=py_1
- jbig=2.1=h0d85af4_2003
- jinja2=3.0.1=pyhd8ed1ab_0
- jmespath=0.10.0=pyh9f0ad1d_0
- jpeg=9d=hbcb3906_0
- jsonschema=3.2.0=pyhd8ed1ab_3
- jupyter_core=4.7.1=py39h6e9494a_0
- k8=0.2.5=h87af4ef_1
- krb5=1.19.1=hcfbf3a7_0
- lerc=2.2.1=h046ec9c_0
- libblas=3.9.0=9_openblas
- libcblas=3.9.0=9_openblas
- libcrc32c=1.1.1=hb1e8313_2
- libcurl=7.77.0=hf45b732_0
- libcxx=11.1.0=habf9029_0
- libdeflate=1.7=h35c211d_5
- libedit=3.1.20210216=h9ed2024_1
- libev=4.33=haf1e3a3_1
- libffi=3.3=h046ec9c_2
- libgd=2.3.2=h4e7a7ea_0
- libgfortran=5.0.0=9_3_0_h6c81a4c_22
- libgfortran5=9.3.0=h6c81a4c_22
- libglib=2.68.3=hd556434_0
- libiconv=1.16=haf1e3a3_0
- liblapack=3.9.0=9_openblas
- libnghttp2=1.43.0=h07e645a_0
- libopenblas=0.3.15=openmp_h5e1b9a4_1
- libpng=1.6.37=hb0a8c7a_2
- libprotobuf=3.17.2=hcf210ce_0
- librsvg=2.50.7=hd2a7919_0
- libsodium=1.0.18=hbcb3906_1
- libssh2=1.9.0=h52ee1ee_6
- libtiff=4.3.0=h1167814_1
- libtool=2.4.6=h2e338ed_1007
- libwebp=1.2.0=h1648767_0
- libwebp-base=1.2.0=h0d85af4_2
- libxcb=1.13=h35c211d_1003
- libxml2=2.9.12=h93ec3fd_0
- llvm-openmp=11.1.0=hda6cdc1_1
- logmuse=0.2.6=pyh8c360ce_0
- lz4-c=1.9.3=h046ec9c_0
- markupsafe=2.0.1=py39h89e85a6_0
- megahit=1.2.9=hfbae3c0_0
- minimap2=2.20=h188c3c3_0
- more-itertools=8.8.0=pyhd8ed1ab_0
- multidict=5.1.0=py39hcbf5805_1
- nbformat=5.1.3=pyhd8ed1ab_0
- ncurses=6.2=h2e338ed_4
- networkx=2.5.1=pyhd8ed1ab_0
- numpy=1.20.3=py39h7eed0ac_1
- oauth2client=4.1.3=py_0
- openjdk=11.0.9.1=hcf210ce_1
- openjpeg=2.4.0=h6e7aa92_1
- openssl=1.1.1k=h0d85af4_0
- packaging=20.9=pyh44b312d_0
- pandas=1.2.4=py39h4d6be9b_0
- pango=1.48.5=ha05cd14_0
- paramiko=2.7.2=pyh9f0ad1d_0
- pcre=8.45=he49afe7_0
- peppy=0.31.1=pyhd8ed1ab_0
- perl=5.32.1=0_h0d85af4_perl5
- pip=21.1.2=pyhd8ed1ab_0
- pixman=0.40.0=hbcb3906_0
- pkg-config=0.29.2=hb849cc2_1008
- pluggy=0.13.1=py39h6e9494a_4
- ply=3.11=py_1
- prettytable=2.1.0=pyhd8ed1ab_0
- prinseq=0.20.4=3
- protobuf=3.17.2=py39h9fcab8e_0
- psutil=5.8.0=py39hcbf5805_1
- pthread-stubs=0.4=hc929b4f_1001
- pulp=2.4=py39h6e9494a_0
- py=1.10.0=pyhd3deb0d_0
- pyasn1=0.4.8=py_0
- pyasn1-modules=0.2.8=py_0
- pycparser=2.20=pyh9f0ad1d_2
- pygments=2.9.0=pyhd8ed1ab_0
- pygraphviz=1.7=py39h7bed040_0
- pynacl=1.4.0=py39hcbf5805_2
- pyopenssl=20.0.1=pyhd8ed1ab_0
- pyparsing=2.4.7=pyh9f0ad1d_0
- pyrsistent=0.17.3=py39hcbf5805_2
- pysftp=0.2.9=py_1
- pysocks=1.7.1=py39h6e9494a_3
- pytest=6.2.4=py39h6e9494a_0
- python=3.9.5=hd187cdc_0_cpython
- python-dateutil=2.8.1=py_0
- python-irodsclient=1.0.0=pyhd8ed1ab_0
- python_abi=3.9=1_cp39
- pytz=2021.1=pyhd8ed1ab_0
- pyyaml=5.4.1=py39hcbf5805_0
- ratelimiter=1.2.0=py_1002
- readline=8.1=h05e3726_0
- requests=2.25.1=pyhd3deb0d_0
- rsa=4.7.2=pyh44b312d_0
- s3transfer=0.4.2=pyhd8ed1ab_0
- samtools=1.12=hfcfc997_1
- seqkit=0.16.1=h527b516_0
- seqtk=1.3=h188c3c3_3
- setuptools=52.0.0=py39hecd8cb5_0
- simplejson=3.17.2=py39hcbf5805_2
- six=1.16.0=pyh6c4a22f_0
- slacker=0.14.0=py_0
- smart_open=5.1.0=pyhd8ed1ab_1
- smmap=3.0.5=pyh44b312d_0
- snakemake=6.4.1=hdfd78af_0
- snakemake-minimal=6.4.1=pyhdfd78af_0
- sqlite=3.36.0=h23a322b_0
- stone=3.2.1=pyhd8ed1ab_0
- stopit=1.1.2=py_0
- tk=8.6.10=hb0a8c7a_1
- toml=0.10.2=pyhd8ed1ab_0
- toposort=1.6=pyhd8ed1ab_0
- traitlets=5.0.5=py_0
- typing-extensions=3.10.0.0=hd8ed1ab_0
- typing_extensions=3.10.0.0=pyha770c72_0
- tzdata=2021a=he74cb21_0
- ubiquerg=0.6.1=pyh9f0ad1d_0
- uritemplate=3.0.1=py_0
- urllib3=1.26.5=pyhd8ed1ab_0
- veracitools=0.1.3=py_0
- wcwidth=0.2.5=pyh9f0ad1d_2
- wheel=0.36.2=pyhd3deb0d_0
- wrapt=1.12.1=py39hcbf5805_3
- xmlrunner=1.7.7=py_0
- xorg-kbproto=1.0.7=h35c211d_1002
- xorg-libice=1.0.10=h01d97ff_0
- xorg-libsm=1.2.3=h1de35cc_1000
- xorg-libx11=1.7.2=h0d85af4_0
- xorg-libxau=1.0.9=h35c211d_0
- xorg-libxdmcp=1.1.3=h35c211d_0
- xorg-libxext=1.3.4=h0d85af4_1
- xorg-libxrender=0.9.10=h0d85af4_1003
- xorg-libxt=1.2.1=h0d85af4_2
- xorg-renderproto=0.11.1=h1de35cc_1002
- xorg-xextproto=7.3.0=h35c211d_1002
- xorg-xproto=7.0.31=h35c211d_1007
- xz=5.2.5=haf1e3a3_1
- yaml=0.2.5=haf1e3a3_0
- yarl=1.5.1=py39hb5aae12_0
- zipp=3.4.1=pyhd8ed1ab_0
- zlib=1.2.11=h7795811_1010
- zstd=1.5.0=h582d3a0_0