-
Notifications
You must be signed in to change notification settings - Fork 91
/
dpr1fact.c
848 lines (828 loc) · 36 KB
/
dpr1fact.c
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
564
565
566
567
568
569
570
571
572
573
574
575
576
577
578
579
580
581
582
583
584
585
586
587
588
589
590
591
592
593
594
595
596
597
598
599
600
601
602
603
604
605
606
607
608
609
610
611
612
613
614
615
616
617
618
619
620
621
622
623
624
625
626
627
628
629
630
631
632
633
634
635
636
637
638
639
640
641
642
643
644
645
646
647
648
649
650
651
652
653
654
655
656
657
658
659
660
661
662
663
664
665
666
667
668
669
670
671
672
673
674
675
676
677
678
679
680
681
682
683
684
685
686
687
688
689
690
691
692
693
694
695
696
697
698
699
700
701
702
703
704
705
706
707
708
709
710
711
712
713
714
715
716
717
718
719
720
721
722
723
724
725
726
727
728
729
730
731
732
733
734
735
736
737
738
739
740
741
742
743
744
745
746
747
748
749
750
751
752
753
754
755
756
757
758
759
760
761
762
763
764
765
766
767
768
769
770
771
772
773
774
775
776
777
778
779
780
781
782
783
784
785
786
787
788
789
790
791
792
793
794
795
796
797
798
799
800
801
802
803
804
805
806
807
808
809
810
811
812
813
814
815
816
817
818
819
820
821
822
823
824
825
826
827
828
829
830
831
832
833
834
835
836
837
838
839
840
841
842
843
844
845
846
847
848
/*
% [Lden,L.d] = dpr1fact(x, d, Lsym, smult, maxu)
% DPR1FACT Factor d[iag] p[lus] r[ank] 1:
% [Lden,L.d] = dpr1fact(x, d, Lsym, smult, maxu)
% Computes fi and d such that
% diag(d_IN) + x*diag(smult)*x' =
%(PI_{i=1}^n L(p_OUT^i,beta_i)) * diag(d_OUT) * (PI_{i=1}^n L(p_OUT^i,beta_i))'
% where L(p,beta) = eye(n) + tril(p*beta',-1).
%
% Lden.dopiv(k) = 1 if p(:,k) has been reordered, with permutation in
% Lden.pivperm.
% We reorder if otherwise |p(i,k)*beta(j,k)| > maxu.
%
% SEE ALSO fwdpr1,bwdpr1,sedumi
% ******************** INTERNAL FUNCTION OF SEDUMI ********************
function [Lden,L.d] = dpr1fact(x, d, Lsym, smult, maxu)
% This file is part of SeDuMi 1.1 by Imre Polik and Oleksandr Romanko
% Copyright (C) 2005 McMaster University, Hamilton, CANADA (since 1.1)
%
% Copyright (C) 2001 Jos F. Sturm (up to 1.05R5)
% Dept. Econometrics & O.R., Tilburg University, the Netherlands.
% Supported by the Netherlands Organization for Scientific Research (NWO).
%
% Affiliation SeDuMi 1.03 and 1.04Beta (2000):
% Dept. Quantitative Economics, Maastricht University, the Netherlands.
%
% Affiliations up to SeDuMi 1.02 (AUG1998):
% CRL, McMaster University, Canada.
% Supported by the Netherlands Organization for Scientific Research (NWO).
%
% This program is free software; you can redistribute it and/or modify
% it under the terms of the GNU General Public License as published by
% the Free Software Foundation; either version 2 of the License, or
% (at your option) any later version.
%
% This program is distributed in the hope that it will be useful,
% but WITHOUT ANY WARRANTY; without even the implied warranty of
% MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
% GNU General Public License for more details.
%
% You should have received a copy of the GNU General Public License
% along with this program; if not, write to the Free Software
% Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA
% 02110-1301, USA
*/
#include <math.h>
#include <string.h>
#include "mex.h"
#include "blksdp.h"
#define LDEN_OUT myplhs[0]
#define D_OUT myplhs[1]
#define NPAROUT 2
#define X_IN prhs[0]
#define D_IN prhs[1]
#define LSYMB_IN prhs[2]
#define SMULT_IN prhs[3]
#define MAXU_IN prhs[4]
#define NPARIN 5
/* ============================================================
DPR1FACT-subroutines: Compact Cholesky for X = diag(d) + p*p'.
several versions, to allow sequential or permuted ordering.
============================================================ */
/* ************************************************************
dpr1fact - Compact Cholesky for X = diag(d) + p*p'/t to
X = L(p,beta) * diag(d_OUT) * L(p,beta)'
where L(p,beta) = eye(m) + tril(p*beta',-1)
INPUT:
n - Order of beta. n = min(m,idep), where idep is the
1st entry where d(idep) = 0 on input. Caller then needs to finish by
pivoting on idep by itself.
mu - mu(m) = 0, mu(i) = max(psqr(i+1:mk)), for i=1:mk-1.
maxu - Controls stability check: we postpone rows such that
max(abs(L)) <= maxu.
UPDATED:
d - Length n vector: the diagonal entries. On input, the old ones,
d(1:n) > 0. On output the updated ones after the factorization.
Remain positive if t > 0.
fi - on input, contains the vector x (=p.^2),
on output it is such that beta(j) = p(j) / fi(j), for
j not in ph2psqr.i.
t - Initial t: set t = 1 for D+p*p', set t = -1 for D-p*p'.
OUTPUT
ph2psqr - The postponed rows j, with corresponding psqr(j). Controled
by maxu.
REMARK:
Since L=eye(m)+tril(p*beta'), beta(n-1) and fi(n-1) are useful only
if m > n: it'll be used in rows n:m-1.
RETURNS: nph2, number of postponed nodes = length(ph2psqr).
************************************************************ */
mwIndex dpr1fact(double *fi, double *d, keydouble *ph2psqr, double *pt, const mwIndex n,
const double *mu, const double maxu)
{
mwIndex nph2;
double dj,fij, muph2, t;
keydouble p2j;
/* ------------------------------------------------------------
fi(j) = x(j) + t*d(j), d_new(j) = fi(j)/t, tnew = fi(j)/d_old(j)
Store j in p2j.k
------------------------------------------------------------ */
t = *pt;
nph2 = 0;
muph2 = 0.0; /* muph2 = max(psqr(postponed_nodes)) */
for(p2j.k = 0; p2j.k < n; p2j.k++){
/* ------------------------------------------------------------
Step j: remains to factor diag(d(j:end)) + p(j:end)*p(j:end)'/t.
The pivot is d(j) + p(j)^2/t = (t*d(j)+x(j))/t.
------------------------------------------------------------ */
dj = d[p2j.k];
p2j.r = fi[p2j.k]; /* p2j = {j, p_j^2} */
fij = p2j.r + t*dj; /* fi(j) = p_j^2 + t*d_j */
/* ------------------------------------------------------------
max SQR of below-diag = [pj^2 * max(p(j+1:end).^2)] / t^2
This should not exceed maxu^2 * pivot^2.
------------------------------------------------------------ */
if(p2j.r * MAX(muph2, mu[p2j.k]) <= SQR(maxu * fij)){
fi[p2j.k] = fij; /* pivot j is stable */
d[p2j.k] = fij / t; /* d(j;NEW) = d_j + (p_j^2 / t). */
t = fij / dj; /* Compute new t for next iter. */
}
else{
ph2psqr[nph2++] = p2j; /* Postpone to phase 2 */
muph2 = MAX(muph2, p2j.r); /* max(ph2psqr.r) */
}
}
*pt = t;
return nph2;
}
/* ************************************************************
dpr1factperm - Compact Cholesky for X = diag(d) + p*p' to
X = L(p,beta) * diag(d_OUT) * L(p,beta)'
where L(p,beta) = eye(m) + tril(p*beta',-1).
Follows the sequence given in "perm"; realligns accepted pivots
from start of "perm", stores rejected ones in ph2psqr.
INPUT:
n - Order of beta. n = min(m,idep), where idep is the
1st entry where d(idep) = 0 on input. Caller then needs to finish by
pivoting on idep by itself.
t - Initial t: set t = 1 for D+p*p', set t = -1 for D-p*p'.
maxu - Controls stability check: we postpone rows such that
max(abs(L)) <= maxu.
mu - max(psqr(perm[i+1:m-1])) for all i=1:n (n <= m). NB: in perm-order.
UPDATED:
perm - pivot sequence. Evaluate pivots perm(0:n-1). On output,
perm(0:n-nph2-1) are the accepted pivots.
d - Length n vector: the diagonal entries. On input, the old ones,
d(1:n) > 0. On output the updated ones after the factorization.
Remain positive if t > 0.
fi - on input, contains the vector x (=p.^2),
on output s.t. beta(j) = p(j) / fi(j) for j=perm[0:n-nph2-1].
OUTPUT
ph2psqr - The postponed rows j, with corresponding psqr(j). Controled
by maxu.
REMARK:
Since L=eye(m)+tril(p*beta'), beta(n-1) and fi(n-1) are useful only
if m > n: it'll be used in rows n:m-1.
RETURNS: nph2, number of postponed nodes = length(ph2psqr).
************************************************************ */
mwIndex dpr1factperm(double *fi, double *d, keydouble *ph2psqr, double *pt,
mwIndex *perm, const mwIndex n, const double *mu, const double maxu)
{
mwIndex i, jnz, nph2;
double dj,fij, muph2, t;
keydouble p2j;
/* ------------------------------------------------------------
fi(j) = x(j) + t*d(j), d_new(j) = fi(j)/t, tnew = fi(j)/d_old(j)
Store j in p2j.k
------------------------------------------------------------ */
t = *pt;
nph2 = 0;
muph2 = 0.0;
jnz = 0; /* index into perm_OUT, for accepted pivots */
for(i = 0; i < n; i++){
p2j.k = perm[i];
dj = d[p2j.k];
p2j.r = fi[p2j.k]; /* p2j = {j, p_j^2} */
fij = p2j.r + t*dj; /* fi(j) = p_j^2 + t*d_j */
if(p2j.r * MAX(muph2, mu[i]) <= SQR(maxu * fij)){
fi[p2j.k] = fij; /* pivot j is stable */
perm[jnz++] = p2j.k;
d[p2j.k] = fij / t; /* d(j;NEW) = d_j + (p_j^2 / t). */
t = fij / dj; /* Compute new t for next iter. */
}
else{
ph2psqr[nph2++] = p2j; /* Postpone to phase 2 */
muph2 = MAX(muph2, p2j.r); /* max(ph2psqr.r) */
}
}
mxAssert(jnz + nph2 == n, "");
*pt = t;
return nph2;
}
/* ************************************************************
ph2dpr1fact - Compact Cholesky for X = diag(d) + p*p' to
X = L(p,beta) * diag(d_OUT) * L(p,beta)'
where L(p,beta) = eye(m) + tril(p*beta',-1)
INPUT:
n - Order of psqr (number of phase-2 rows).
t - Initial t: output from 1st phase; is mon. incr.
t >= 1 for D+p*p', whereas -1 <= t < 0 for D-p*p'.
UPDATED:
psqr - Contains the sparse vector (p.^2), where the row-indices
are the postponed row numbers. On output, the r-values are
replaced by fi (so that beta = p ./ fi).
d - the diagonal entries. On input, the old ones,
on output the updated ones after the factorization.
Only those with psqr.i-indices are changed (should be
all positive already on input).
REMARK:
Since L=eye(m)+tril(p*beta'), beta(n-1) and fi(n-1) are useful only
if m > n: it'll be used in rows n:m-1.
************************************************************ */
void ph2dpr1fact(keydouble *psqr, double *d, double *pt, const mwIndex n)
{
mwIndex j, jnz;
double dj,fij,t;
t = *pt;
/* ------------------------------------------------------------
fi(j) = x(j) + t*d(j), d_new(j) = fi(j)/t, tnew = fi(j)/d_old(j)
------------------------------------------------------------ */
for(jnz = 0; jnz < n; jnz++){
j = (psqr+jnz)->k;
dj = d[j];
fij = ((psqr+jnz)->r += t*dj); /* fi(j) = p_j^2 + t*d_j */
d[j] = fij / t; /* d(j;NEW) = d_j + (p_j^2 / t). */
t = fij / dj; /* Compute new t for next iter. */
}
*pt = t;
}
/* ============================================================
MAIN routine for Compact Cholesky for X = diag(d) + p*p'.
redirects to the dpr1fact subroutines.
============================================================ */
/* ************************************************************
PROCEDURE dodpr1fact - Factors diag +/- rank-1:
(D+t*p*p')(perm) = L * diag(d_NEW(perm)) * L',
L = I+tril(p(perm)*beta',-1).
INPUT
p - length m. We've to factor diag(d)+ (1/t) * p*p'.
t - scalar: 1 for adding p*p', -1 for subtracting p*p'.
maxu - scalar >= 1: The factor L(p,beta) = I+tril(p(perm)*beta',-1)
will be such that max(abs(L)) <= maxu by choosing perm-ordering.
m - length(p).
UPDATED
d - length m. The diagonal. This factors
diag(d_OLD)+t*p*p' = L(p,beta) * diag(d_NEW) * L(p,beta)'
OUTPUT
beta - Length <= m (actual length returned in *pm).
perm - Length m. Only written if RETURN=1, which means that the
original ordering was not maxu-stable. Pivot ordering on p,d.
pn - *pn = length(beta) <= m; n<m only if there are dependent rows.
dep - Length ndep+1. Lists rows i where d(i) == 0. Indices are
ascending, and dep[ndep] >= m is tail of this list. On output,
one entry may be removed, and stored in dep[ndep_OLD].
*pndep - Cardinality of dep. May be decremented on output, if a
dependency could be removed, i.e. if t > 0 and p(dep) != 0.
WORK
psqr - length m float working array, for p.^2 and later "fi".
kdwork - length m working array for storing postponed
rows (rowno and psqr(rowno)), which have to be sorted.
RETURNS 1 if reordered rows into perm; 0 means that we used
the sequential 0:m-1 ordering.
CAUTION: If t < 0, one dependency may be added by the
rank-1 subtraction. The caller should therefore call findnewdep
afterwards (for t < 0).
************************************************************ */
char dodpr1fact(double *beta, mwIndex *perm, double *d, double t, const double *p,
const mwIndex m, mwIndex *pn, mwIndex *dep, mwIndex *pndep,
const double maxu, double *psqr, keydouble *kdwork)
{
mwIndex ndep, n, i, j, nph2, nextj, idep;
double psqrdep, h;
double *mu;
char deldep;
/* ------------------------------------------------------------
If t = 0, then factor diag(d)+0*p*p' = I*diag(d)*I, i.e. beta=0.
------------------------------------------------------------ */
if(t == 0.0){
*pn = 0; /* number of nonzeros in beta */
return 0;
}
/* ------------------------------------------------------------
t is nonzero, replace by tnew := 1/t.
We've to factor diag(d) + p*p' / tnew.
------------------------------------------------------------ */
t = 1/t;
ndep = *pndep;
/* ------------------------------------------------------------
Use beta temporarily as mu(1:m), which lists max(psqr(i+1:m)).
mu will be used only to select stable pivots, before writing beta.
------------------------------------------------------------ */
mu = beta;
/* ------------------------------------------------------------
Let psqr = p(1:m).^2
------------------------------------------------------------ */
realHadamard(psqr, p, p, m);
/* ------------------------------------------------------------
Case A: d(1:mk) > 0 (no dep). Then n = m.
------------------------------------------------------------ */
if(dep[0] >= m){
*pn = m;
/* ------------------------------------------------------------
Let mu(m) = 0, mu(i) = max(psqr(i+1:mk)), for i=1:mk-1.
------------------------------------------------------------ */
for(h = 0.0, i = m ; i > 0; i--){
mu[i-1] = h;
h = MAX(h, psqr[i-1]);
}
/* ------------------------------------------------------------
1st round: pivot sequentially on 1:m, skipping instable ones.
------------------------------------------------------------ */
nph2 = dpr1fact(psqr, d, kdwork, &t, m, mu, maxu);
/* ------------------------------------------------------------
Write results 1st round: beta = p ./ psqr.
------------------------------------------------------------ */
if(!nph2){ /* all 1:m handled */
realHadadiv(beta, p, psqr, m);
return 0;
}
else{ /* skipped kdwork.k */
for(i = 0, j = 0; i < nph2; i++){
nextj = (kdwork+i)->k;
fromto(perm+j, j, nextj); /* perm[j-i:nextj-i] = j:nextj */
realHadadiv(beta + j, p + j, psqr + j, nextj - j);
j = nextj + 1; /* skip nextj == (kdwork+i)->k */
--perm; --beta; /* keep j valid index */
}
fromto(perm+j, j, m); /* perm[j-i:nextj-i] = j:nextj */
realHadadiv(beta + j, p + j, psqr + j, m - j);
perm += m; /* point just behind accepted pivots */
beta += m;
/* ------------------------------------------------------------
Sort rejected nodes in decreasing order of p.^2.
------------------------------------------------------------ */
kdsortdec(kdwork, nph2);
/* ------------------------------------------------------------
2nd round factorization: ordered.
------------------------------------------------------------ */
ph2dpr1fact(kdwork, d, &t, nph2);
for(i = 0; i < nph2; i++){
j = (kdwork+i)->k;
perm[i] = j;
beta[i] = p[j] / (kdwork+i)->r;
}
return 1;
} /* if nph2 > 0 */
} /* if !dep */
/* ------------------------------------------------------------
If d(1:mk) is NOT positive:
Let (j,psqrdep) = max{psqr(i) | d(i)==0.0, i=1:m}
------------------------------------------------------------ */
else{
psqrdep = 0.0;
j = 0;
for(i = 0; dep[i] < m; i++)
if(psqr[dep[i]] > psqrdep){
j = i;
psqrdep = psqr[dep[i]];
}
mxAssert(i <= ndep, "");
/* ------------------------------------------------------------
Threshold h = maxu^2 * psqrdep
If all psqr>h have been factorized, we'll pivot on dep[k], if
t * psqrdep > 0 (otherwise we view this as being zero).
------------------------------------------------------------ */
if(psqrdep > 0.0){ /* we'll remove dependency at idep=dep[j] */
idep = dep[j];
/* ------------------------------------------------------------
If psqrdep>0, we can remove dependency idep=dep[j].
Let dep[j:ndep-1] = dep[j+1:ndep] (incl tail dep[ndep]), then
let dep[ndep] = idep, and --ndep. For Lorentz cones, removed
dependencies may get dependent again at the t=-1 step.
------------------------------------------------------------ */
if(t > 0.0){
deldep = 1;
memmove(dep+j, dep+j+1, (ndep - j) * sizeof(mwIndex));
h = SQR(maxu) * psqrdep;
dep[ndep] = idep; /* remember removed dependency */
*pndep = --ndep;
}
/* ------------------------------------------------------------
If we're subtracting a rank-1 factor (t<0), then psqrdep should
be zero (up to rounding errors)
------------------------------------------------------------ */
else{ /* D - p*p' should be psd, so */
h = psqrdep; /* we've to round [0,psqrdep] to 0 */
deldep = 0;
}
}
else{
idep = dep[0]; /* psqr(dep) == 0: remains dependent */
h = 0.0;
deldep = 0;
}
/* ------------------------------------------------------------
PARTITION: perm = [find(psqr > h), idep, remainder].
Then let n be j = length(find(psqr > h)).
Temporarily use nph2 = m-length(remainder).
------------------------------------------------------------ */
for(i = 0, j = 0, nph2 = m; i < idep; i++)
if(psqr[i] > h)
perm[j++] = i;
else
perm[--nph2] = i;
for(++i; i < m; i++) /* skip over i = idep */
if(psqr[i] > h)
perm[j++] = i;
else
perm[--nph2] = i;
mxAssert(j == nph2-1,"");
perm[j] = idep; /* finally insert idep */
n = j; /* length(find(psqr > h)) */
*pn = j + deldep; /* cardinality of beta */
/* ------------------------------------------------------------
Now h=max(psqr(perm(n+1:m))).
Let mu(i) = max(psqr(perm(i+1:m))).
------------------------------------------------------------ */
for(i = n ; i > 0; i--){
mu[i-1] = h;
h = MAX(h, psqr[perm[i-1]]);
}
/* ------------------------------------------------------------
1st round: pivot sequentially on perm(1:n), skipping instable ones.
The stable pivots are re-alligned at start of perm.
------------------------------------------------------------ */
nph2 = dpr1factperm(psqr, d, kdwork, &t, perm, n, mu, maxu);
/* ------------------------------------------------------------
Write results 1st round: beta = p(perm(1:n-nph2)) ./ psqr(perm(1:n-nph2)).
------------------------------------------------------------ */
n -= nph2; /* cardinality 1st round */
for(i = 0; i < n; i++){
j = perm[i];
beta[i] = p[j] / psqr[j];
}
perm += n; /* handled 1st round */
beta += n;
/* ------------------------------------------------------------
Sort rejected nodes in decreasing order of p.^2.
------------------------------------------------------------ */
if(nph2){
kdsortdec(kdwork, nph2);
/* ------------------------------------------------------------
2nd round factorization: ordered.
------------------------------------------------------------ */
ph2dpr1fact(kdwork, d, &t, nph2);
for(i = 0; i < nph2; i++){
j = (kdwork+i)->k;
perm[i] = j;
beta[i] = p[j] / (kdwork+i)->r;
}
}
/* ------------------------------------------------------------
If psqrdep > 0, we can now finish off the factorization by
pivoting on idep == perm[nph2]:
d_new(i) = p_i^2/t, beta = 1/p_i.
------------------------------------------------------------ */
if(deldep){
d[idep] = psqr[idep] / t;
beta[nph2] = 1.0 / p[idep];
}
}
return 1;
}
/* ************************************************************
PROCEDURE findnewdep - CAUTION: this searches only over previously
removed dependencies. The rank reduction could however have happened
elsewehere, viz. last pivot location!!
INPUT
ndep - Number of dependent nodes, d[dep[0:ndep-1]] == 0.
maxndep - dep is length maxndep+1. dep[ndep+1:maxndep] are previously
removed dependencies.
d - length m vector, m = dep[ndep].
UPDATED
dep - length maxndep+1 array. If d[dep[i]] <= 0 for some i > ndep,
then dep[i] is inserted into dep(0:ndep), so that dep(0:ndep+1) remains
sorted.
RETURNS 1 if ndep has to be incremented, i.e. an entry of
dep(ndep+1:maxndep) is inserted into dep(0:ndep). Otherwise returns 0.
************************************************************ */
mwIndex findnewdep(mwIndex *dep, const mwIndex ndep, const mwIndex maxndep, const double *d)
{
mwIndex i, j, idep;
for(i = ndep + 1; i <= maxndep; i++)
if(d[dep[i]] <= 0.0)
break;
if(i <= maxndep){
idep = dep[i];
j = 0;
intbsearch(&j, dep, ndep, idep); /* first j s.t. dep[j] > idep */
memmove(dep+j+1, dep+j, (i - j) * sizeof(mwIndex));
dep[j] = idep;
return 1;
}
else
return 0;
}
/* ============================================================
PRODFORMFACT does a dpr1fact for each rank-1 update.
============================================================ */
/* ************************************************************
PROCEDURE prodformfact
INPUT
xsuper - column k consists of rows 0:xsuper(k+1)-1.
n - number of (dense) columns
smult - Length n vector. the k-th step adds (D+smult(k)*pk*pk').
firstpiv - Length n array, first affecting pivot.
colperm - Length n array, column permutation for smult and firstpiv.
maxu - max_k(max abs(Lk)) will be at most maxu. Rows may be
reordered to achieve this.
UPDATED
p - Length(p) = sum(xsuper). On input, contains the dense columns
as in X = diag(d) + P*diag(smult(colperm))*P'. On output, a
product-form forward solve has been made to p(:,2:n).
d - length xsuper[n] nonnegative vector. On input, the diagonal w/o dense
columns. On output, the diagonal in the final product form Cholesky.
dep - Length ndep+1 list of entries where d(i)=0; dep(0) < dep(1)...;
dep[ndep] = xsuper[n], the tail.
pndep - length of dep, may be decreased on output, if dependencies
are removed by adding the rank-1 updates..
OUTPUT
perm - sum_j(xsuper(j+1)|ordered(j)=1) array, contains a stable pivot
ordering for those columns where ordered[j]=1.
beta - Length length(p). Such that L_k = eye(m) + tril(pk * betak, -1).
betajc - Length n+1. start of betak. nnz(beta) <= nnz(p).
ordered - length n. Ordered[j]==1 iff the rows of column j are
reordered for numerical stability (controled by maxu).
WORK
fwork - length xsuper[n] float working array.
kdwork - length xsuper[n] (i,r)-working array.
************************************************************ */
void prodformfact(double *p, mwIndex *perm, double *beta, mwIndex *betajc,
double *d, char *ordered, const mwIndex *xsuper,
const mwIndex *colperm, const mwIndex *firstpiv,
const double *smult, const mwIndex n, mwIndex *dep, mwIndex *pndep,
const double maxu, double *fwork, keydouble *kdwork)
{
mwIndex k, colk, mk, nk, j, inz, maxndep;
double *betak, *pk, *pj;
char useperm;
/* ------------------------------------------------------------
Initialize. inz points to next avl. place in beta,
perm is used to store pivot ordering,
------------------------------------------------------------ */
inz = 0;
maxndep = *pndep;
/* ------------------------------------------------------------
For all columns k, mk = length(pk), nk = length(betak).
------------------------------------------------------------ */
for(k = 0, pk = p; k < n; k++){
colk = colperm[k]; /* pointer into smult, firstpiv */
betajc[k] = inz;
mk = xsuper[k+1];
betak = beta + inz;
pk += xsuper[k];
useperm = dodpr1fact(betak, perm, d, smult[colk], pk, mk, &nk, dep, pndep,
maxu, fwork, kdwork);
ordered[k] = useperm;
if(smult[colk] < 0.0)
*pndep += findnewdep(dep,*pndep,maxndep,d);
/* ------------------------------------------------------------
Forward solve on columns p(k+1:n)
------------------------------------------------------------ */
if(smult[colk] != 0.0){
if(useperm){
for(j = k+1, pj = pk; j < n; j++){ /* with pivoting */
pj += xsuper[j];
if(firstpiv[colperm[j]] <= k) /*Only if overlapping nzs*/
fwipr1o(pj, perm, pk, betak, mk, nk); /* o = ordered */
}
perm += mk; /* full length permutation */
}
else
for(j = k+1, pj = pk; j < n; j++){ /* without pivoting */
pj += xsuper[j];
if(firstpiv[colperm[j]] <= k)
fwipr1(pj, pk, betak, mk, nk);
}
}
/* ------------------------------------------------------------
Point to next column
------------------------------------------------------------ */
inz += nk;
}
/* ------------------------------------------------------------
In total, we wrote inz <= length(p) nonzeros in beta.
------------------------------------------------------------ */
betajc[n] = inz;
#ifdef DO_SUPER_SAFE
/* ------------------------------------------------------------
If smult[i] < 0 for some i, then let dep = find(d<=0), and d(dep) = 0.
Note: length(d) = m = xsuper[n].
------------------------------------------------------------ */
mk = xsuper[n];
inz = 0;
for(j = 0; j < mk; j++)
if(d[j] <= 0.0){
d[j] = 0.0;
dep[inz++] = j;
mxAssert(inz <= maxndep, "Fatal numerical error in dpr1fact.");
}
*pndep = inz;
#endif
}
#define NLDEN_FIELDS 5
/* ============================================================
MAIN: MEXFUNCTION
============================================================ */
/* ************************************************************
PROCEDURE mexFunction - Entry for Matlab
************************************************************ */
void mexFunction(const int nlhs, mxArray *plhs[],
const int nrhs, const mxArray *prhs[])
{
mxArray *MY_FIELD;
mxArray *myplhs[NPAROUT];
mwIndex m,n,ndep,i,j, permj, pnnz, dznnz, permnnz;
char *ordered;
mwIndex *dep, *colperm, *invrowperm, *betajc, *pivperm, *firstpiv;
double *beta, *d,*betajcPr, *pj, *orderedPr, *fwork, *p, *permPr, *lab;
const double *colpermPr, *smult, *firstPr;
const char *LdenFieldnames[] = {"betajc","beta","p","pivperm","dopiv"};
keydouble *kdwork;
double maxu;
jcir x,dz;
/* ------------------------------------------------------------
Check for proper number of arguments
------------------------------------------------------------ */
mxAssert(nrhs >= NPARIN, "dpr1fact requires more input arguments");
mxAssert(nlhs <= NPAROUT, "dpr1fact produces less output arguments");
/* ------------------------------------------------------------
Get inputs (x, lab=d, smult, maxu)
------------------------------------------------------------ */
m = mxGetM(X_IN); /* x */
n = mxGetN(X_IN);
mxAssert(mxIsSparse(X_IN), "x should be sparse.");
x.jc = mxGetJc(X_IN);
x.ir = mxGetIr(X_IN);
x.pr = mxGetPr(X_IN);
mxAssert( mxGetM(D_IN) * mxGetN(D_IN) == m, "Size mismatch d."); /* d */
mxAssert( mxGetM(SMULT_IN) * mxGetN(SMULT_IN) == n, "Size mismatch smult."); /* smult */
smult = mxGetPr(SMULT_IN);
maxu = mxGetScalar(MAXU_IN); /* maxu */
/* ------------------------------------------------------------
DISASSEMBLE structure Lsymb.{dz,perm,first}
------------------------------------------------------------ */
mxAssert(mxIsStruct(LSYMB_IN), "Lsymb should be a structure.");
MY_FIELD = mxGetField(LSYMB_IN,(mwIndex)0,"dz"); /* Lsymb.dz */
mxAssert( MY_FIELD != NULL, "Missing field Lsymb.dz.");
mxAssert(mxGetM(MY_FIELD) == m && mxGetN(MY_FIELD) == n, "Lsymb.dz size mismatch.");
mxAssert(mxIsSparse(MY_FIELD), "Lsymb.dz must be sparse.");
dz.jc = mxGetJc(MY_FIELD);
dz.ir = mxGetIr(MY_FIELD); /* (rowperm) */
MY_FIELD = mxGetField(LSYMB_IN,(mwIndex)0,"perm"); /* Lsymb.perm */
mxAssert(MY_FIELD != NULL, "Missing field Lsymb.perm.");
mxAssert(mxGetM(MY_FIELD) * mxGetN(MY_FIELD) == n, "Size mismatch Lsymb.perm."); /* (colperm) */
colpermPr = mxGetPr(MY_FIELD);
MY_FIELD = mxGetField(LSYMB_IN,(mwIndex)0,"first"); /* Lsymb.first */
mxAssert( MY_FIELD != NULL, "Missing field Lsymb.first.");
mxAssert( mxGetM(MY_FIELD) * mxGetN(MY_FIELD) == n, "Size mismatch Lsymb.first.");
firstPr = mxGetPr(MY_FIELD);
/* ------------------------------------------------------------
Let pnnz = sum(dz.jc), dznnz = dz.jc[n].
------------------------------------------------------------ */
for(i = 1, pnnz = 0; i <= n; i++)
pnnz += dz.jc[i];
dznnz = dz.jc[n];
/* ------------------------------------------------------------
Allocate working arrays:
mwIndex: colperm(n), firstpiv(n), dep(m+1), betajc(n+1), pivperm(pnnz),
invrowperm(m).
char: ordered(n)
double: fwork(dznnz), d(dznnz),
keydouble: kdwork(dznnz).
------------------------------------------------------------ */
firstpiv= (mwIndex *) mxCalloc(MAX(n,1), sizeof(mwIndex));
colperm = (mwIndex *) mxCalloc(MAX(n,1), sizeof(mwIndex));
dep = (mwIndex *) mxCalloc(m+1, sizeof(mwIndex));
betajc = (mwIndex *) mxCalloc(n+1, sizeof(mwIndex));
invrowperm = (mwIndex *) mxCalloc(MAX(m,1),sizeof(mwIndex));
pivperm = (mwIndex *) mxCalloc(MAX(pnnz,1), sizeof(mwIndex)); /* pivperm */
ordered = (char *) mxCalloc(MAX(n,1), sizeof(char)); /* boolean */
fwork = (double *) mxCalloc(MAX(dznnz,1), sizeof(double)); /* float */
d = (double *) mxCalloc(MAX(dznnz,1), sizeof(double));
kdwork = (keydouble *) mxCalloc(MAX(dznnz,1), sizeof(keydouble)); /*(i,r)*/
/* ------------------------------------------------------------
ALLOCATE vectors p(pnnz+m), beta(pnnz), .
NB1: will be assigned to output vectors later.
NB2: The +m for p is temporary. This will avoid memory problems when
initializing p(invperm,:) = x, if Lsymb.dz is invalid.
------------------------------------------------------------ */
p = (double *) mxCalloc(MAX(pnnz + m,1), sizeof(double)); /* p */
beta = (double *) mxCalloc(MAX(pnnz,1), sizeof(double)); /* beta */
/* ------------------------------------------------------------
Convert colperm and firstpiv to integer
------------------------------------------------------------ */
for(i = 0; i < n; i++){ /* colperm(0:n-1) */
j = colpermPr[i];
colperm[i] = --j;
}
for(i = 0; i < n; i++){
j = firstPr[i];
firstpiv[i] = --j;
}
/* ------------------------------------------------------------
CREATE OUTPUT vector lab := dOUT = dIN (duplicate)
------------------------------------------------------------ */
D_OUT = mxDuplicateArray(D_IN);
lab = mxGetPr(D_OUT);
/* ------------------------------------------------------------
Let d(1:dznnz) = lab(dz.ir).
------------------------------------------------------------ */
for(i = 0; i < dznnz; i++)
d[i] = lab[dz.ir[i]];
/* ------------------------------------------------------------
dep = [find(d<=0), m], ndep = length(find(d==0)
------------------------------------------------------------ */
ndep = 0;
for(i = 0; i < dznnz; i++) /* dep = find(d <= 0) */
if(d[i] <= 0.0)
dep[ndep++] = i;
dep[ndep] = m; /* tail of dep */
/* ------------------------------------------------------------
Let invrowperm(dz.ir) = 0:dznnz-1, where dznnz = dz.jc[n] <= m
------------------------------------------------------------ */
mxAssert(dznnz <= m,"");
for(i = 0; i < dznnz; i++)
invrowperm[dz.ir[i]] = i;
/* ------------------------------------------------------------
Let p(invrowperm,:) = x(:,colperm)
------------------------------------------------------------ */
for(j = 0, pj = p; j < n; j++){
pj += dz.jc[j];
permj = colperm[j];
for(i = x.jc[permj]; i < x.jc[permj+1]; i++)
pj[invrowperm[x.ir[i]]] = x.pr[i];
}
/* ------------------------------------------------------------
Create output structure Lden
------------------------------------------------------------ */
LDEN_OUT = mxCreateStructMatrix((mwSize)1, (mwSize)1, NLDEN_FIELDS, LdenFieldnames);
/* ------------------------------------------------------------
Create LDEN.P(pnnz), and realloc p to the size it should have, i.e. pnnz
------------------------------------------------------------ */
MY_FIELD = mxCreateDoubleMatrix(pnnz, (mwSize)1, mxREAL);
mxSetField(LDEN_OUT, (mwIndex)0,"p", MY_FIELD);
if(pnnz > 0){
mxFree(mxGetPr(MY_FIELD));
if((p = (double *) mxRealloc(p, pnnz * sizeof(double))) == NULL)
mexErrMsgTxt("Memory allocation error");
mxSetPr(MY_FIELD, p);
}
else
mxFree(p);
/* ------------------------------------------------------------
The actual job is done here:
Adding n rank-1 updates, with a multiple smult(1:n).
------------------------------------------------------------ */
prodformfact(p, pivperm, beta, betajc, d, ordered, dz.jc, colperm,
firstpiv, smult, n, dep, &ndep, maxu, fwork, kdwork);
/* ------------------------------------------------------------
THE DIAGONAL IS PERMUTED BACK:
Bring d back in original ordering: lab(dz.ir) = d(1:dznnz).
------------------------------------------------------------ */
for(i = 0; i < dznnz; i++)
lab[dz.ir[i]] = d[i];
/* ------------------------------------------------------------
Let permnnz = sum{dz.jc[j] | ordered[j]==1}, and set
Lden.pivperm = pivperm (mwIndex to double, but C-form)
------------------------------------------------------------ */
for(i = 0, permnnz = 0; i < n; i++)
permnnz += ordered[i] * dz.jc[i+1];
mxAssert(permnnz <= pnnz, "");
MY_FIELD = mxCreateDoubleMatrix(permnnz, (mwSize)1, mxREAL);
mxSetField(LDEN_OUT, (mwIndex)0,"pivperm", MY_FIELD);
permPr = mxGetPr(MY_FIELD);
for(i = 0; i < permnnz; i++)
permPr[i] = pivperm[i]; /* mwIndex to double */
/* ------------------------------------------------------------
Create LDEN.BETAJC(n+1)
------------------------------------------------------------ */
MY_FIELD = mxCreateDoubleMatrix(n + 1, (mwSize)1, mxREAL);
mxSetField(LDEN_OUT, (mwIndex)0,"betajc", MY_FIELD);
betajcPr = mxGetPr(MY_FIELD);
for(i = 0; i <= n; i++){
j = betajc[i];
betajcPr[i] = ++j;
}
/* ------------------------------------------------------------
Create LDEN.BETA(betajc[n])
------------------------------------------------------------ */
MY_FIELD = mxCreateDoubleMatrix(betajc[n], (mwSize)1, mxREAL);
mxSetField(LDEN_OUT, (mwIndex)0,"beta", MY_FIELD);
if(betajc[n] > 0){
mxFree(mxGetPr(MY_FIELD));
if((beta = (double *) mxRealloc(beta, betajc[n] * sizeof(double))) == NULL)
mexErrMsgTxt("Memory allocation error");
mxSetPr(MY_FIELD, beta);
}
else
mxFree(beta);
/* ------------------------------------------------------------
Create LDEN.DOPIV(n)
------------------------------------------------------------ */
MY_FIELD = mxCreateDoubleMatrix(n, (mwSize)1, mxREAL);
mxSetField(LDEN_OUT, (mwIndex)0,"dopiv", MY_FIELD);
orderedPr = mxGetPr(MY_FIELD);
for(i = 0; i < n; i++)
orderedPr[i] = ordered[i];
/* ------------------------------------------------------------
Release working arrays
------------------------------------------------------------ */
mxFree(kdwork);
mxFree(d);
mxFree(fwork);
mxFree(ordered);
mxFree(pivperm);
mxFree(invrowperm);
mxFree(betajc);
mxFree(dep);
mxFree(colperm);
mxFree(firstpiv);
/* ------------------------------------------------------------
Copy requested output parameters (at least 1), release others.
------------------------------------------------------------ */
i = MAX(nlhs, 1);
memcpy(plhs,myplhs, i * sizeof(mxArray *));
for(; i < NPAROUT; i++)
mxDestroyArray(myplhs[i]);
}