diff --git a/package-lock.json b/package-lock.json
index fac506d18..1dfc30b51 100644
--- a/package-lock.json
+++ b/package-lock.json
@@ -31752,6 +31752,11 @@
"spdx-expression-parse": "^3.0.0"
}
},
+ "validate.js": {
+ "version": "0.13.1",
+ "resolved": "https://registry.npmjs.org/validate.js/-/validate.js-0.13.1.tgz",
+ "integrity": "sha512-PnFM3xiZ+kYmLyTiMgTYmU7ZHkjBZz2/+F0DaALc/uUtVzdCt1wAosvYJ5hFQi/hz8O4zb52FQhHZRC+uVkJ+g=="
+ },
"value-equal": {
"version": "0.4.0",
"resolved": "https://registry.npmjs.org/value-equal/-/value-equal-0.4.0.tgz",
diff --git a/src/assets/thirdPartyServices/snet/gene_annotation_service/form/index.js b/src/assets/thirdPartyServices/snet/gene_annotation_service/form/index.js
index da481c6e6..6e5a2c4ac 100644
--- a/src/assets/thirdPartyServices/snet/gene_annotation_service/form/index.js
+++ b/src/assets/thirdPartyServices/snet/gene_annotation_service/form/index.js
@@ -29,7 +29,7 @@ const GeneGoOptions = [
{ label: "Molecular Function", value: "molecular_function" },
];
-const Pathways = [{ label: "SMPDB", value: "smpdb" }, { label: "Reactome", value: "reactome" }];
+const Pathways = [{ label: "Reactome", value: "reactome" }];
const GeneInputMethods = { Manual: 0, Import: 1 };
@@ -137,13 +137,14 @@ const AnnotationForm = props => {
} else if (sa === "biogrid-interaction-annotation") {
const int = new Filter();
int.setFilter("interaction");
- int.setValue(annotations.includes("gene-pathway-annotation") && includeProtiens ? "Proteins" : "Genes");
+ int.setValue(includeProtiens ? "Proteins" : "Genes");
annotation.setFiltersList([int, ...(annotations.includes("gene-go-annotation") ? [namespace, nop] : [])]);
}
return annotation;
})
);
+
const requestProps = {
request: annotationRequest,
onEnd: ({ status, statusMessage, message: msg }) => {
@@ -184,11 +185,11 @@ const AnnotationForm = props => {
},
};
- this.props.serviceClient.unary(Annotate.Annotate, requestProps);
+ props.serviceClient.unary(Annotate.Annotate, requestProps);
};
return (
-
+
{/* Gene List */}
Input Genes
diff --git a/src/assets/thirdPartyServices/snet/gene_annotation_service/index.js b/src/assets/thirdPartyServices/snet/gene_annotation_service/index.js
index b1972cdc3..21572e877 100644
--- a/src/assets/thirdPartyServices/snet/gene_annotation_service/index.js
+++ b/src/assets/thirdPartyServices/snet/gene_annotation_service/index.js
@@ -1,5 +1,4 @@
import React, { useState } from "react";
-import ReactDOM from "react-dom";
import { SnackbarProvider } from "notistack";
import AnnotationForm from "./form";
import AnnotationResult from "./result";
@@ -10,9 +9,11 @@ const App = props => {
return (
-
{id ? : }
+
+ {id ? : }
+
);
};
-ReactDOM.render(, document.getElementById("app"));
+export default App;
diff --git a/src/assets/thirdPartyServices/snet/gene_annotation_service/result/index.js b/src/assets/thirdPartyServices/snet/gene_annotation_service/result/index.js
index d4688298a..d7ebf7b65 100644
--- a/src/assets/thirdPartyServices/snet/gene_annotation_service/result/index.js
+++ b/src/assets/thirdPartyServices/snet/gene_annotation_service/result/index.js
@@ -1,5 +1,5 @@
import React, { useState, useEffect, Fragment } from "react";
-import { parse, formatDistanceToNow } from "date-fns";
+import { parse, formatDistanceToNow, toDate } from "date-fns";
import { RESULT_ADDR, downloadSchemeFile } from "../service";
import TabbedTables from "../tables";
import Visualizer from "../visualizer";
@@ -68,7 +68,6 @@ const AnnotationResult = props => {
const renderError = () => (
- {console.log(response)}
{response.statusMessage}. Try to
@@ -82,7 +81,7 @@ const AnnotationResult = props => {
The result contains {nodes.length} entities and {edges.length} connections between them.
- This page will expire in {formatDistanceToNow(parse(response.expire_time * 1000))}.
+ This page will expire in {formatDistanceToNow(toDate(response.expire_time * 1000))}.