From 6e874046dec956281c444f2a984b9694c8fb7eab Mon Sep 17 00:00:00 2001 From: Tom White Date: Fri, 11 Oct 2024 09:30:22 +0100 Subject: [PATCH] Try installing latest bio2zarr at end --- .github/workflows/build-numpy-2.yml | 2 ++ requirements-numpy2-dev.txt | 1 - 2 files changed, 2 insertions(+), 1 deletion(-) diff --git a/.github/workflows/build-numpy-2.yml b/.github/workflows/build-numpy-2.yml index 013ecec7e..4e1c14890 100644 --- a/.github/workflows/build-numpy-2.yml +++ b/.github/workflows/build-numpy-2.yml @@ -23,6 +23,8 @@ jobs: run: | python -m pip install --upgrade pip pip install -r requirements-numpy2.txt -r requirements-numpy2-dev.txt + # update bio2zarr for NumPy 2, see https://github.com/sgkit-dev/bio2zarr/issues/256 + pip install -U 'numpy<2.1' -U git+https://github.com/sgkit-dev/bio2zarr.git # - name: Run pre-commit # uses: pre-commit/action@v2.0.0 - name: Test with pytest (numba jit disabled) diff --git a/requirements-numpy2-dev.txt b/requirements-numpy2-dev.txt index f2370bd5e..275c7d538 100644 --- a/requirements-numpy2-dev.txt +++ b/requirements-numpy2-dev.txt @@ -14,7 +14,6 @@ bed-reader rechunker cbgen > 1.0.5; platform_system != "Windows" cbgen == 1.0.1; platform_system == "Windows" -bio2zarr @ git+https://github.com/sgkit-dev/bio2zarr.git; platform_system != "Windows" yarl matplotlib asv