From f4d7cb07b75da22e6607214e9cf83bb4a4b1f45b Mon Sep 17 00:00:00 2001 From: olivroy <52606734+olivroy@users.noreply.github.com> Date: Fri, 23 Jun 2023 13:33:17 -0400 Subject: [PATCH 1/2] Add favicon to pkgdown site (#553) --- pkgdown/favicon/apple-touch-icon-120x120.png | Bin 0 -> 5760 bytes pkgdown/favicon/apple-touch-icon-152x152.png | Bin 0 -> 7291 bytes pkgdown/favicon/apple-touch-icon-180x180.png | Bin 0 -> 8394 bytes pkgdown/favicon/apple-touch-icon-60x60.png | Bin 0 -> 2891 bytes pkgdown/favicon/apple-touch-icon-76x76.png | Bin 0 -> 3697 bytes pkgdown/favicon/apple-touch-icon.png | Bin 0 -> 8394 bytes pkgdown/favicon/favicon-16x16.png | Bin 0 -> 915 bytes pkgdown/favicon/favicon-32x32.png | Bin 0 -> 1582 bytes pkgdown/favicon/favicon.ico | Bin 0 -> 15086 bytes 9 files changed, 0 insertions(+), 0 deletions(-) create mode 100644 pkgdown/favicon/apple-touch-icon-120x120.png create mode 100644 pkgdown/favicon/apple-touch-icon-152x152.png create mode 100644 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zg0uhD`;>+EYNx;P`vuyjW&AK(vJa%;nM z#nENb&*WRgn9zpiTJN!JS9|f!>;8|k@@AYt6L1DI#*XKeTl@T|wLN9;(KOhv56SMl zREa>`mPfi#szBRm?Am7D+uQkT-tpc8Eb;o>c4J?sAAtTCliv99kC)Q7JMGToWfXM& z+s*iu$-~0bHM~m##|9*)eVq3T#+A^Hf3)xbymh7JZLsC-#?ynM)x(vc=cx^2>oFe& z^Df4_fw>d8lQ(c`yD#Kj?J>Kce?MqXA`UlqLfUONaqeR7yy>@?XV?RwceDrZ37i|? zGYd3nOG^W;5wuTvl4Et&QzroZUZA-V-(&`G@L!T@{8wB0XLT~_JVQ&vVUlSjLNh~> z!xTdk4D2caFikY_F$EZNh8~k+7YD$_9xmobI|a=Wfk;j}MGb28m_yCs|5=Q+8w;KB z9>A#7kNPmy!dT3|Ozs8fUy3=o4QZ&i_;Ai$^m~PC25ZON{$7kR-TDEVeWrebwV!~# zMT`|60lz-=jy{M_9=!Ak>4!6sItlS0glB6- z^chdiAN4`Tjq^7OcM=n4UX}ifx7l>8<)9_)BxZ9zCqLfszdYwRGAr#P9U~oyI9VeD z*WB8_Bm5AE`&f_f;=ErxGx=5>i}c}&r>$e;V{R^Tl|Re;hS1IXLmXAA_*2IZ;5S+0~~$W_dmR>w@m;5 literal 0 HcmV?d00001 From 73759417f2d06ed25a541503b4207fa6f881f261 Mon Sep 17 00:00:00 2001 From: olivroy <52606734+olivroy@users.noreply.github.com> Date: Tue, 11 Jul 2023 09:43:44 -0400 Subject: [PATCH 2/2] Remove `tidyr::spread()` (#552) * Remove `tidyr::spread()` from examples and vignettes. * Require tidyr (>= 1.0.0) * Change spread -> pivot_wider in tests. * Remove the last tidyr::spread in pkg code * WS --- DESCRIPTION | 2 +- R/adorn_title.R | 2 +- R/tabyl.R | 7 ++++++- man/adorn_title.Rd | 2 +- tests/testthat/test-adorn-title.R | 4 ++-- tests/testthat/test-adorn-totals.R | 4 ++-- tests/testthat/test-tabyl-classifiers.R | 9 +++++++-- vignettes/tabyls.Rmd | 4 ++-- vignettes/tabyls.md | 4 ++-- 9 files changed, 24 insertions(+), 14 deletions(-) diff --git a/DESCRIPTION b/DESCRIPTION index fad20f4f..08153716 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -32,7 +32,7 @@ Imports: stringr, snakecase (>= 0.9.2), tidyselect (>= 1.0.0), - tidyr (>= 0.7.0) + tidyr (>= 1.0.0) License: MIT + file LICENSE LazyData: true RoxygenNote: 7.2.3 diff --git a/R/adorn_title.R b/R/adorn_title.R index 273d813b..3294cb29 100644 --- a/R/adorn_title.R +++ b/R/adorn_title.R @@ -22,7 +22,7 @@ #' mtcars %>% #' group_by(gear, am) %>% #' summarise(avg_mpg = mean(mpg), .groups = "drop") %>% -#' spread(gear, avg_mpg) %>% +#' pivot_wider(names_from = am, values_from = avg_mpg) %>% #' adorn_rounding() %>% #' adorn_title("top", row_name = "Gears", col_name = "Cylinders") adorn_title <- function(dat, placement = "top", row_name, col_name) { diff --git a/R/tabyl.R b/R/tabyl.R index 11d020b2..03576757 100644 --- a/R/tabyl.R +++ b/R/tabyl.R @@ -207,7 +207,12 @@ tabyl_2way <- function(dat, var1, var2, show_na = TRUE, show_missing_levels = TR tabl[2][is.na(tabl[2])] <- "NA_" tabl[2][tabl[2] == ""] <- "emptystring_" result <- tabl %>% - tidyr::spread(!!var2, "tabyl_2way_n", fill = 0) + tidyr::pivot_wider( + names_from = !!var2, + values_from = "tabyl_2way_n", + values_fn = ~ dplyr::coalesce(.x, 0L), + names_sort = TRUE + ) if ("emptystring_" %in% names(result)) { result <- result[c(setdiff(names(result), "emptystring_"), "emptystring_")] if (getOption("tabyl.emptystring", TRUE) & interactive()) { diff --git a/man/adorn_title.Rd b/man/adorn_title.Rd index f6f9d092..81c17b14 100644 --- a/man/adorn_title.Rd +++ b/man/adorn_title.Rd @@ -33,7 +33,7 @@ library(dplyr) mtcars \%>\% group_by(gear, am) \%>\% summarise(avg_mpg = mean(mpg), .groups = "drop") \%>\% - spread(gear, avg_mpg) \%>\% + pivot_wider(names_from = am, values_from = avg_mpg) \%>\% adorn_rounding() \%>\% adorn_title("top", row_name = "Gears", col_name = "Cylinders") } diff --git a/tests/testthat/test-adorn-title.R b/tests/testthat/test-adorn-title.R index d6d959ba..d0e2d3ec 100644 --- a/tests/testthat/test-adorn-title.R +++ b/tests/testthat/test-adorn-title.R @@ -38,7 +38,7 @@ test_that("name overrides work", { test_that("non-tabyls are treated correctly", { non_tab <- mtcars %>% dplyr::count(gear, cyl) %>% - tidyr::spread(gear, n) + tidyr::pivot_wider(names_from = gear, values_from = n) expect_error(adorn_title(non_tab), "When input is not a data.frame of class tabyl, a value must be specified for the col_name argument") expect_equal( @@ -111,7 +111,7 @@ test_that("for printing purposes: tabyl class stays tabyl, data.frame stays data mtcars %>% dplyr::group_by(cyl, am) %>% dplyr::summarise(mean_mpg = mean(mpg)) %>% - tidyr::spread(am, mean_mpg) + tidyr::pivot_wider(names_from = am, values_from = mean_mpg) # handles tibble input expect_s3_class( diff --git a/tests/testthat/test-adorn-totals.R b/tests/testthat/test-adorn-totals.R index 9046ce47..b7598ebc 100644 --- a/tests/testthat/test-adorn-totals.R +++ b/tests/testthat/test-adorn-totals.R @@ -120,7 +120,7 @@ ct_2 <- mtcars %>% dplyr::group_by(cyl, gear) %>% dplyr::tally() %>% - tidyr::spread(gear, n) + tidyr::pivot_wider(names_from = gear, values_from = n) df1 <- data.frame(x = c(1, 2), y = c(NA, 4)) test_that("grouped_df gets ungrouped and succeeds", { @@ -128,7 +128,7 @@ test_that("grouped_df gets ungrouped and succeeds", { mtcars %>% dplyr::group_by(cyl, gear) %>% dplyr::tally() %>% - tidyr::spread(gear, n) + tidyr::pivot_wider(names_from = gear, values_from = n) expect_equal( ct_2 %>% adorn_totals(), ct_2 %>% dplyr::ungroup() %>% adorn_totals() diff --git a/tests/testthat/test-tabyl-classifiers.R b/tests/testthat/test-tabyl-classifiers.R index 2279f993..f682d9e4 100644 --- a/tests/testthat/test-tabyl-classifiers.R +++ b/tests/testthat/test-tabyl-classifiers.R @@ -5,11 +5,16 @@ a <- mtcars %>% b <- mtcars %>% dplyr::count(cyl, carb) %>% - tidyr::spread(carb, n, fill = 0) %>% + tidyr::pivot_wider( + names_from = carb, + values_from = n, + values_fill = 0, + names_sort = TRUE + ) %>% as.data.frame() # for comparison purposes, remove the tbl_df aspect -test_that("as_tabyl works on result of a non-janitor count/spread", { +test_that("as_tabyl works on result of a non-janitor count/pivot_wider", { expect_equal( as_tabyl(a), as_tabyl(b, 2, "cyl", "carb") diff --git a/vignettes/tabyls.Rmd b/vignettes/tabyls.Rmd index 3382608a..31908572 100644 --- a/vignettes/tabyls.Rmd +++ b/vignettes/tabyls.Rmd @@ -208,11 +208,11 @@ cases %>% Here's a more complex example that uses a data.frame of means, not counts. We create a table containing the mean of a 3rd variable when grouped by two other variables, then use `adorn_` functions to round the values and append Ns. The first part is pretty straightforward: ```{r more_non_tabyls, warning = FALSE, message = FALSE} -library(tidyr) # for spread() +library(tidyr) # for pivot_wider() mpg_by_cyl_and_am <- mtcars %>% group_by(cyl, am) %>% summarise(mpg = mean(mpg), .groups = "drop") %>% - spread(am, mpg) + pivot_wider(names_from = am, values_from = mpg) mpg_by_cyl_and_am ``` diff --git a/vignettes/tabyls.md b/vignettes/tabyls.md index 5da88717..ea526931 100644 --- a/vignettes/tabyls.md +++ b/vignettes/tabyls.md @@ -353,11 +353,11 @@ grouped by two other variables, then use `adorn_` functions to round the values and append Ns. The first part is pretty straightforward: ``` r -library(tidyr) # for spread() +library(tidyr) # for pivot_wider() mpg_by_cyl_and_am <- mtcars %>% group_by(cyl, am) %>% summarise(mpg = mean(mpg), .groups = "drop") %>% - spread(am, mpg) + pivot_wider(names_from = am, values_from = mpg) mpg_by_cyl_and_am #> # A tibble: 3 × 3