.gitignore

bin/
dist/
client-dist/
build/
client-build/
*.log
*.log.*
.settings
.eclipse
executeLog*
*.pyc
*.class
productionLog
*~

!/intermine/webservice/client/download/dist/

# /intermine/objectstore/main/
/intermine/objectstore/main/src.png
/intermine/objectstore/main/src.dot

# /intermine/perl/
/intermine/perl/blib
/intermine/perl/Makefile
/intermine/perl/Makefile.old
/intermine/perl/pm_to_blib

# /intermine/perl/InterMine-Item/
/intermine/perl/InterMine-Item/*.tar.gz
/intermine/perl/InterMine-Item/*.yml
/intermine/perl/InterMine-Item/_build
/intermine/perl/InterMine-Item/Build
/intermine/perl/InterMine-Item/blib
/intermine/perl/InterMine-Item/Makefile.PL
/intermine/perl/InterMine-Item/*bak
/intermine/perl/InterMine-Item/MYMETA.*
/intermine/perl/InterMine-Item/META.*

# /intermine/perl/InterMine-Model/
/intermine/perl/InterMine-Model/*tar.gz
/intermine/perl/InterMine-Model/*.yml
/intermine/perl/InterMine-Model/Makefile.PL
/intermine/perl/InterMine-Model/Build
/intermine/perl/InterMine-Model/_build
/intermine/perl/InterMine-Model/blib
/intermine/perl/InterMine-Model/*.bak
/intermine/perl/InterMine-Model/MYMETA.*
/intermine/perl/InterMine-Model/META.*

# /intermine/perl/InterMine-TypeLibrary/
/intermine/perl/InterMine-TypeLibrary/*.tar.gz
/intermine/perl/InterMine-TypeLibrary/*.yml
/intermine/perl/InterMine-TypeLibrary/Makefile.PL
/intermine/perl/InterMine-TypeLibrary/Build
/intermine/perl/InterMine-TypeLibrary/_build
/intermine/perl/InterMine-TypeLibrary/blib
/intermine/perl/InterMine-TypeLibrary/*.bak

# /intermine/perl/MineViewer/
/intermine/perl/MineViewer/blib
/intermine/perl/MineViewer/*META*
/intermine/perl/MineViewer/logs
/intermine/perl/MineViewer/Build
/intermine/perl/MineViewer/build
/intermine/perl/MineViewer/_build
/intermine/perl/MineViewer/.git
/intermine/perl/MineViewer/.git-ignore
/intermine/perl/MineViewer/*.pid

# /intermine/perl/MineViewer/data/
/intermine/perl/MineViewer/data/*.db

# /intermine/perl/MineViewer/public/javascripts/
/intermine/perl/MineViewer/public/javascripts/*zip
/intermine/perl/MineViewer/public/javascripts/js
/intermine/perl/MineViewer/public/javascripts/css
/intermine/perl/MineViewer/public/javascripts/development-bundle
/intermine/perl/MineViewer/public/javascripts/DataTables*

# /intermine/perl/WebReports/
/intermine/perl/WebReports/*.pid
/intermine/perl/WebReports/Build
/intermine/perl/WebReports/Build.Pl
/intermine/perl/WebReports/*META*

# /intermine/perl/Webservice-InterMine/
/intermine/perl/Webservice-InterMine/*.tar.gz
/intermine/perl/Webservice-InterMine/_build
/intermine/perl/Webservice-InterMine/blib
/intermine/perl/Webservice-InterMine/Build
/intermine/perl/Webservice-InterMine/*.yml
/intermine/perl/Webservice-InterMine/Makefile*
/intermine/perl/Webservice-InterMine/*.out
/intermine/perl/Webservice-InterMine/nytprof
/intermine/perl/Webservice-InterMine/cover_db
/intermine/perl/Webservice-InterMine/_Inline
/intermine/perl/Webservice-InterMine/*.bak
/intermine/perl/Webservice-InterMine/MYMETA.json
/intermine/perl/Webservice-InterMine/META.json

# /intermine/perl/Webservice-InterMine-Bio/
/intermine/perl/Webservice-InterMine-Bio/MYMETA.*
/intermine/perl/Webservice-InterMine-Bio/META.*
/intermine/perl/Webservice-InterMine-Bio/blib
/intermine/perl/Webservice-InterMine-Bio/Build
/intermine/perl/Webservice-InterMine-Bio/_build
/intermine/perl/Webservice-InterMine-Bio/Makefile.PL
/intermine/perl/Webservice-InterMine-Bio/*.tar.gz
/intermine/perl/Webservice-InterMine-Bio/*.swp
/intermine/perl/Webservice-InterMine-Bio/*.bak

# /intermine/perl/Webservice-InterMine-Simple/
/intermine/perl/Webservice-InterMine-Simple/blib
/intermine/perl/Webservice-InterMine-Simple/_build
/intermine/perl/Webservice-InterMine-Simple/Build
/intermine/perl/Webservice-InterMine-Simple/Build.PL
/intermine/perl/Webservice-InterMine-Simple/*META*

# /intermine/perl/registry/
/intermine/perl/registry/logs
/intermine/perl/registry/data
/intermine/perl/registry/sessions
/intermine/perl/registry/Build
/intermine/perl/registry/*build
/intermine/perl/registry/blib
/intermine/perl/registry/*tar.gz
/intermine/perl/registry/script
/intermine/perl/registry/data_old
/intermine/perl/registry/*pid
/intermine/perl/registry/*META*

# /intermine/python/
/intermine/python/*.egg-info
/intermine/python/*.zip
/intermine/python/htmlcov
/intermine/python/docs
/intermine/python/.git

# /intermine/python/intermine-core
/intermine/python/intermine-core/*.egg-info
/intermine/python/intermine-core/*.zip
/intermine/python/intermine-core/htmlcov
/intermine/python/intermine-core/docs
/intermine/python/intermine-core/.git
/intermine/python/intermine-core/.tox

# /intermine/python/intermine-bio/
/intermine/python/intermine-bio/docs

# /intermine/python/intermine-core/
/intermine/python/intermine-core/docs
/intermine/python/intermine-core/htmlcov
/intermine/python/intermine-core/*.zip

# /intermine/ruby/intermine/
/intermine/ruby/intermine/pkg
/intermine/ruby/intermine/html

# /intermine/ruby/intermine-bio/
/intermine/ruby/intermine-bio/html
/intermine/ruby/intermine-bio/pkg

# /intermine/scripts/
/intermine/scripts/_Inline

# testmodel
/testmodel/test/properties
/testmodel/webapp/test/properties

# /intermine/web/main/
/intermine/web/main/files
/intermine/web/main/allclasses-frame.html
/intermine/web/main/index.html
/intermine/web/main/overview-frame.html
/intermine/web/main/stylesheet.css

# /intermine/web/test
/intermine/web/test/properties

# intermine/api/test
/intermine/api/test/properties

# /intermine/web/test/src/org/intermine/webservice/server/output/
/intermine/web/test/src/org/intermine/webservice/server/output/RowResultProcessorBenchmark.java
/intermine/web/test/src/org/intermine/webservice/server/output/FilterBenchmarkTest.java

# /intermine/webapp/main/resources/webapp/images/
/intermine/webapp/main/resources/webapp/images/.xvpics

# /intermine/webservice/client/javascript/imbedding/0.2/
/intermine/webservice/client/javascript/imbedding/0.2/*min.*

# /intermine/webservice/client/javascript/imbedding/0.2/style/
/intermine/webservice/client/javascript/imbedding/0.2/style/*min.*

# mines
malariamine/

# IDEs
nbproject/
nb-build.xml
.idea/
apache-tomcat*
prefixed
failures.list
*.jks
biotestmine/project.xml