nextflow_schema.json

{
  "$schema": "http://json-schema.org/draft-07/schema",
  "$id": "https://raw.githubusercontent.com//master/nextflow_schema.json",
  "title": " pipeline parameters",
  "description": "",
  "type": "object",
  "definitions": {
    "input_output": {
      "title": "Input/Output",
      "type": "object",
      "description": "",
      "default": "",
      "properties": {
        "total_reads": {
          "type": "integer",
          "default": 10000,
          "description": "Number of reads to generate per GENERATE_READS process."
        },
        "num_files": {
          "type": "integer",
          "default": 10,
          "description": "Number of GENERATE_READS processes which generate a single FASTQ file."
        },
        "small_files": {
          "type": "integer",
          "default": 1000,
          "description": "Number of miniature text files to generate in MANY_SMALL_FILES process"
        }
      }
    },
    "tool_selection": {
      "title": "Tool Selection",
      "type": "object",
      "description": "",
      "default": "",
      "properties": {
        "run": {
          "type": "string",
          "description": "Selectively run a tool. If this option is enabled only tools with this name will be ran. Note: this may affect downstream tools."
        },
        "skip": {
          "type": "string",
          "description": "Selectively disable a tool. If this option is enabled a tool will be ignored. Note: this may affect downstream tools."
        }
      }
    }
  },
  "allOf": [
    {
      "$ref": "#/definitions/input_output"
    },
    {
      "$ref": "#/definitions/tool_selection"
    }
  ]
}