From 22847ac1a543b8e675b573527694cffbd2b4c734 Mon Sep 17 00:00:00 2001 From: Intron7 Date: Wed, 22 Jan 2025 13:02:15 +0100 Subject: [PATCH 1/5] fix docs release notes --- docs/release-notes/0.11.0.md | 2 +- docs/release-notes/0.11.1.md | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/docs/release-notes/0.11.0.md b/docs/release-notes/0.11.0.md index ccdb6e31..912601e3 100644 --- a/docs/release-notes/0.11.0.md +++ b/docs/release-notes/0.11.0.md @@ -1,4 +1,4 @@ -### 0.10.11 {small}`2024-12-19` +### 0.11.0 {small}`2024-12-19` ```{rubric} Features ``` diff --git a/docs/release-notes/0.11.1.md b/docs/release-notes/0.11.1.md index 03ff9687..fa0a069d 100644 --- a/docs/release-notes/0.11.1.md +++ b/docs/release-notes/0.11.1.md @@ -1,4 +1,4 @@ -### 0.10.11 {small}`2025-01-21` +### 0.11.1 {small}`2025-01-21` ```{rubric} Features ``` From b8b8d8d040f12e63e1d5bdfbe300553caf854610 Mon Sep 17 00:00:00 2001 From: Intron7 Date: Wed, 22 Jan 2025 13:05:46 +0100 Subject: [PATCH 2/5] update release notes --- docs/release-notes/0.11.0.md | 4 ++-- docs/release-notes/0.11.1.md | 4 ++-- 2 files changed, 4 insertions(+), 4 deletions(-) diff --git a/docs/release-notes/0.11.0.md b/docs/release-notes/0.11.0.md index 912601e3..0e33df61 100644 --- a/docs/release-notes/0.11.0.md +++ b/docs/release-notes/0.11.0.md @@ -3,7 +3,7 @@ ```{rubric} Features ``` * Adds support for Multi-GPU out-of-core support through Dask {pr}`179` {smaller}`S Dicks, I Gold & P Angerer` -* use `cuvs` over `raft` for `pp.neighbors` for `rapids>=24.12`{pr}`304` {smaller}`S Dicks` +* use `cuvs` over `raft` for `pp.neighbors` for `rapids>=24.12` {pr}`304` {smaller}`S Dicks` * switched to a different implementation of `pp.harmony_integrate` {pr}`308` {smaller}`S Dicks` ```{rubric} Performance ``` @@ -13,4 +13,4 @@ ```{rubric} Misc ``` -* Update `get_random_state` for `scrublet `{pr}`301` {smaller}`S Dicks` +* Update `get_random_state` for `scrublet` {pr}`301` {smaller}`S Dicks` diff --git a/docs/release-notes/0.11.1.md b/docs/release-notes/0.11.1.md index fa0a069d..3a17a433 100644 --- a/docs/release-notes/0.11.1.md +++ b/docs/release-notes/0.11.1.md @@ -10,5 +10,5 @@ ```{rubric} Misc ``` -* Pin `numba<0.61.0`{pr}`319` {smaller}`S Dicks` -* Update Docker to `rapids-24.12` and `python-3.12`{pr}`318` {smaller}`S Dicks` +* Pin `numba<0.61.0` {pr}`319` {smaller}`S Dicks` +* Update Docker to `rapids-24.12` and `python-3.12` {pr}`318` {smaller}`S Dicks` From 06d2c8737e6b35e20b1d0a778edb35a3eb1c157e Mon Sep 17 00:00:00 2001 From: Intron7 Date: Wed, 22 Jan 2025 13:24:54 +0100 Subject: [PATCH 3/5] set timeout --- .github/workflows/test-gpu-dev.yml | 3 +++ .github/workflows/test-gpu.yml | 3 +++ 2 files changed, 6 insertions(+) diff --git a/.github/workflows/test-gpu-dev.yml b/.github/workflows/test-gpu-dev.yml index 2d5cd25f..177f1e6f 100644 --- a/.github/workflows/test-gpu-dev.yml +++ b/.github/workflows/test-gpu-dev.yml @@ -49,6 +49,9 @@ jobs: with: cache-dependency-path: pyproject.toml + - name: Set UV Timeout + run: UV_HTTP_TIMEOUT = 120 + - name: Install rapids-singlecell run: >- uv pip install --system -e .[test,rapids12] diff --git a/.github/workflows/test-gpu.yml b/.github/workflows/test-gpu.yml index 40d0c931..f424cd37 100644 --- a/.github/workflows/test-gpu.yml +++ b/.github/workflows/test-gpu.yml @@ -48,6 +48,9 @@ jobs: uses: hynek/setup-cached-uv@v2 with: cache-dependency-path: pyproject.toml + + - name: Set UV Timeout + run: UV_HTTP_TIMEOUT = 120 - name: Install rapids-singlecell run: uv pip install --system -e .[test,rapids12] --extra-index-url=https://pypi.nvidia.com --index-strategy=unsafe-best-match From f8992e4f6df9c737fc9e07fdd494e57ee73db7a5 Mon Sep 17 00:00:00 2001 From: "pre-commit-ci[bot]" <66853113+pre-commit-ci[bot]@users.noreply.github.com> Date: Wed, 22 Jan 2025 12:25:03 +0000 Subject: [PATCH 4/5] [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci --- .github/workflows/test-gpu-dev.yml | 2 +- .github/workflows/test-gpu.yml | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/.github/workflows/test-gpu-dev.yml b/.github/workflows/test-gpu-dev.yml index 177f1e6f..493b082c 100644 --- a/.github/workflows/test-gpu-dev.yml +++ b/.github/workflows/test-gpu-dev.yml @@ -51,7 +51,7 @@ jobs: - name: Set UV Timeout run: UV_HTTP_TIMEOUT = 120 - + - name: Install rapids-singlecell run: >- uv pip install --system -e .[test,rapids12] diff --git a/.github/workflows/test-gpu.yml b/.github/workflows/test-gpu.yml index f424cd37..4a9145d5 100644 --- a/.github/workflows/test-gpu.yml +++ b/.github/workflows/test-gpu.yml @@ -48,7 +48,7 @@ jobs: uses: hynek/setup-cached-uv@v2 with: cache-dependency-path: pyproject.toml - + - name: Set UV Timeout run: UV_HTTP_TIMEOUT = 120 From faa148ce58a49e3a50988bc6480c17318e2b9067 Mon Sep 17 00:00:00 2001 From: Intron7 Date: Wed, 22 Jan 2025 13:33:50 +0100 Subject: [PATCH 5/5] update timeout --- .github/workflows/test-gpu-dev.yml | 4 +++- .github/workflows/test-gpu.yml | 4 +++- 2 files changed, 6 insertions(+), 2 deletions(-) diff --git a/.github/workflows/test-gpu-dev.yml b/.github/workflows/test-gpu-dev.yml index 493b082c..add1a11d 100644 --- a/.github/workflows/test-gpu-dev.yml +++ b/.github/workflows/test-gpu-dev.yml @@ -50,7 +50,9 @@ jobs: cache-dependency-path: pyproject.toml - name: Set UV Timeout - run: UV_HTTP_TIMEOUT = 120 + env: + UV_HTTP_TIMEOUT: 120 + run: echo "UV_HTTP_TIMEOUT is set to $UV_HTTP_TIMEOUT" - name: Install rapids-singlecell run: >- diff --git a/.github/workflows/test-gpu.yml b/.github/workflows/test-gpu.yml index 4a9145d5..1acdda8e 100644 --- a/.github/workflows/test-gpu.yml +++ b/.github/workflows/test-gpu.yml @@ -50,7 +50,9 @@ jobs: cache-dependency-path: pyproject.toml - name: Set UV Timeout - run: UV_HTTP_TIMEOUT = 120 + env: + UV_HTTP_TIMEOUT: 120 + run: echo "UV_HTTP_TIMEOUT is set to $UV_HTTP_TIMEOUT" - name: Install rapids-singlecell run: uv pip install --system -e .[test,rapids12] --extra-index-url=https://pypi.nvidia.com --index-strategy=unsafe-best-match