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pop_eventinfo.m
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pop_eventinfo.m
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% pop_eventinfo() - GUI for BIDS event info editing, generated based on
% fields of EEG.event
%
% Usage:
% >> [EEG, eInfoDesc, eInfo] = pop_eventinfo( EEG );
%
% Inputs:
% EEG - EEG dataset structure. May only contain one dataset.
%
% Optional input:
% 'default' - generate BIDS event info using default values without
% popping up the GUI
% Outputs:
% 'EEG' - [struct] Updated EEG structure containing event BIDS information
% in each EEG structure at EEG.BIDS.eInfoDesc and EEG.BIDS.eInfo
%
% 'eInfoDesc' - [struct] structure describing BIDS event fields as you specified.
% See BIDS specification for all suggested fields.
%
% 'eInfo' - [cell] BIDS event fields and their corresponding
% event fields in the EEGLAB event structure. Note that
% EEGLAB event latency, duration, and type are inserted
% automatically as columns "onset" (latency in sec), "duration"
% (duration in sec), "value" (EEGLAB event type)
%
% Author: Dung Truong, Arnaud Delorme
function [EEG, STUDY, command] = pop_eventinfo(EEG, STUDY, varargin)
%% check if there's already an opened window
if ~isempty(findobj('Tag','eventBidsTable'))
errordlg2('A window is already openened for pop_eventinfo');
return
end
command = ''; %'[EEG, [], command] = pop_eventinfo(EEG)';
%% if STUDY is provided, check for consistency
hasSTUDY = false;
if exist('STUDY','var') && ~isempty(STUDY)
[STUDY, EEG] = pop_checkdatasetinfo(STUDY, EEG);
command = '[EEG, STUDY, command] = pop_eventinfo(EEG, STUDY);';
hasSTUDY = true;
end
% perform check to make sure EEG.event is consistent across EEG
try
allEvents = [EEG.event];
if ~isempty(allEvents)
eventFields = fieldnames(allEvents);
else
return; % empty
end
catch ME
if (strcmp(ME.identifier, 'MATLAB:catenate:structFieldBad'))
numFields = cellfun(@(x) numel(fieldnames(x)), {EEG.event});
[num, index] = max(numFields);
eventFields = fieldnames(EEG(index).event);
warning('There is mismatch in number of fields in EEG.event structures. Using fields of EEG(%d) which has the highest number of fields (%d).', index, num);
end
end
bidsFields = {'onset', 'duration', 'trial_type','value','stim_file','sample','response_time'};
eventFields = setdiff(eventFields, 'latency');
% define global variables
% -----------------------
% main data structure containing event info to be updated by events in GUI
eventBIDS = newEventBIDS(EEG, eventFields, bidsFields);
% default GUI settings
appWidth = 800;
appHeight = 500;
bg = [0.65 0.76 1];
fg = [0 0 0.4];
levelThreshold = 20;
fontSize = 12;
% Use GUI
if nargin < 3
% create UI
f = figure('MenuBar', 'None', 'ToolBar', 'None', 'Name', 'Edit BIDS event info - pop_eventinfo', 'Color', bg);
f.Position(3) = appWidth;
f.Position(4) = appHeight;
uicontrol(f, 'Style', 'text', 'String', 'BIDS information for EEG.event fields', 'Units', 'normalized','FontWeight','bold','ForegroundColor', fg,'BackgroundColor', bg, 'Position', [0 0.9 1 0.1]);
tbl = uitable(f, 'RowName',[],'ColumnName', { 'BIDS Field' 'EEGLAB Field' 'Levels' 'LongName' 'Description' 'Unit Name' 'Unit Prefix' 'TermURL' }, 'Units', 'normalized', 'FontSize', fontSize, 'Tag', 'eventBidsTable');
tbl.Position = [0.01 0.54 0.98 0.41];
tbl.CellSelectionCallback = {@cellSelectedCB, eventFields};
tbl.CellEditCallback = @cellEditCB;
tbl.ColumnEditable = [false false false true true true true true];
tbl.ColumnWidth = {appWidth/9, appWidth/9,appWidth/9,appWidth*2/9,appWidth*2/9,appWidth/9,appWidth/9,appWidth/9};
units = {' ','ampere','becquerel','candela','coulomb','degree Celsius','farad','gray','henry','hertz','joule','katal','kelvin','kilogram','lumen','lux','metre','mole','newton','ohm','pascal','radian','second','siemens','sievert','steradian','tesla','volt','watt','weber'};
unitPrefixes = {' ','deci','centi','milli','micro','nano','pico','femto','atto','zepto','yocto','deca','hecto','kilo','mega','giga','tera','peta','exa','zetta','yotta'};
tbl.ColumnFormat = {[] [] [] [] [] units unitPrefixes []};
uicontrol(f, 'Style', 'pushbutton', 'String', 'Add BIDS field', 'Units', 'normalized', 'Position', [0.01 0.49 0.22 0.05], 'Callback', {@addFieldCB, tbl});
uicontrol(f, 'Style', 'pushbutton', 'String', 'Remove BIDS field', 'Units', 'normalized', 'Position', [0.24 0.49 0.22 0.05], 'Callback', {@removeFieldCB, tbl, bidsFields});
uicontrol(f, 'Style', 'pushbutton', 'String', 'Ok', 'Units', 'normalized', 'Position', [0.85 0.05 0.1 0.05], 'Callback', @okCB);
uicontrol(f, 'Style', 'pushbutton', 'String', 'Cancel', 'Units', 'normalized', 'Position', [0.7 0.05 0.1 0.05], 'Callback', @cancelCB);
% pre-populate table
bidsFields = fieldnames(eventBIDS);
data = cell(length(bidsFields),length(tbl.ColumnName));
for i=1:length(bidsFields)
% pre-populate description
field = bidsFields{i};
data{i, strcmp(tbl.ColumnName,'BIDS Field')} = field;
if isfield(eventBIDS, field)
if isfield(eventBIDS.(field), 'EEGField')
data{i,strcmp(tbl.ColumnName, 'EEGLAB Field')} = eventBIDS.(field).EEGField;
end
if isfield(eventBIDS.(field), 'LongName')
data{i,strcmp(tbl.ColumnName, 'LongName')} = eventBIDS.(field).LongName;
end
if isfield(eventBIDS.(field), 'Description')
data{i,strcmp(tbl.ColumnName, 'Description')} = eventBIDS.(field).Description;
end
if isfield(eventBIDS.(field), 'Units')
data{i,strcmp(tbl.ColumnName, 'Unit Name')} = eventBIDS.(field).Units;
end
if isfield(eventBIDS.(field), 'TermURL')
data{i,strcmp(tbl.ColumnName, 'TermURL')} = eventBIDS.(field).TermURL;
end
if isfield(eventBIDS.(field), 'Levels') && ~isempty(eventBIDS.(field).Levels)
data{i,strcmp(tbl.ColumnName, 'Levels')} = strjoin(fieldnames(eventBIDS.(field).Levels),',');
else
if strcmp(field, 'onset') || strcmp(field, "sample") || strcmp(field, "duration")
data{i,strcmp(tbl.ColumnName, 'Levels')} = 'n/a';
else
data{i,strcmp(tbl.ColumnName, 'Levels')} = 'Click to specify below';
end
end
end
clear('field');
end
tbl.Data = data;
waitfor(f);
% Use default value - pop_eventinfo(EEG,'default') called
elseif nargin < 4 && ischar(varargin{1}) && strcmp(varargin{1}, 'default')
done();
end
%% --Helper functions---
%---------------------
function cancelCB(~, ~)
clear('eventBIDS');
close(f);
end
function okCB(~, ~)
done();
close(f);
end
% Callback for Add BIDS field button
function addFieldCB(~, ~, bidsTable)
[~, ~, ~, structout] = inputgui('geometry', {[1 1]}, 'geomvert', 1, 'uilist', {...
{'Style', 'text', 'string', 'New field name (no space):'} ...
{'Style', 'edit', 'Tag', 'new_name'} ...
});
if ~isempty(structout)
if ~isempty(structout.new_name)
% add to gui table
currData = bidsTable.Data;
newData = [currData; {structout.new_name '' '' '' '' '' '' ''}];
bidsTable.Data = newData;
% add to data structure
eventBIDS.(structout.new_name) = [];
eventBIDS.(structout.new_name).EEGField = '';
eventBIDS.(structout.new_name).LongName = '';
eventBIDS.(structout.new_name).Description = '';
eventBIDS.(structout.new_name).Levels = [];
eventBIDS.(structout.new_name).Units = '';
eventBIDS.(structout.new_name).TermURL = '';
end
end
end
% Callback for Remove BIDS field button
function removeFieldCB(~, ~, bidsTable, bidsFields)
fieldsToRemove = ['(none)' setdiff(bidsTable.Data(:, strcmp(bidsTable.ColumnName,'BIDS Field'))', bidsFields)]; % only allow removing added custom fields
[~, ~, ~, structout] = inputgui('geometry', {[1 1]}, 'geomvert', 1, 'uilist', {...
{'Style', 'text', 'string', 'Custom field to remove:'} ...
{'Style', 'popupmenu', 'string', fieldsToRemove, 'Tag', 'removed_field'} ...
});
if ~isempty(structout)
if ~isempty(structout.removed_field) && structout.removed_field > 1
selectedField = fieldsToRemove{structout.removed_field};
if ~strcmp(selectedField, '(none)')
currBidsFields = bidsTable.Data(:, strcmp(bidsTable.ColumnName, 'BIDS Field'));
rowIdx = strcmp(currBidsFields, selectedField);
bidsTable.Data(rowIdx,:) = [];
if isfield(eventBIDS, selectedField)
eventBIDS = rmfield(eventBIDS, selectedField);
end
end
end
end
end
function done()
eInfoDesc = [];
eInfo = {};
% default fields automatically generated by EEGLAB in bids_export
eInfoDesc.duration.LongName = 'Event duration';
eInfoDesc.duration.Description = 'Duration of the event (measured from onset) in seconds';
eInfoDesc.duration.Units = 'second';
eInfoDesc.sample.LongName = 'Sample';
eInfoDesc.sample.Description = 'Onset of the event according to the sampling scheme of the recorded modality (i.e., referring to the raw data file that the events.tsv file accompanies).';
eInfoDesc.trial_type.LongName = 'Event categorization';
eInfoDesc.trial_type.Description = 'Primary categorisation of each trial to identify them as instances of the experimental conditions.';
eInfoDesc.response_time.LongName = 'Response time';
eInfoDesc.response_time.Description = 'Response time measued in seconds.';
eInfoDesc.response_time.Units = 'second';
eInfoDesc.stim_file.LongName = 'Stimulus file location';
eInfoDesc.stim_file.Description = 'Represents the location of the stimulus file (image, video, sound etc.) presented at the given onset time. They should be stored in the /stimuli folder (under the root folder of the dataset; with optional subfolders). The values under the stim_file column correspond to a path relative to "/stimuli".';
% prepare return struct
fields = fieldnames(eventBIDS);
fMap = [];
if hasSTUDY && isfield(STUDY.etc, 'tags')
hedTags = STUDY.etc.tags;
fMap = fieldMap.createfMapFromStruct(hedTags);
elseif isfield(EEG(1).etc,'tags')
hedTags = EEG(1).etc.tags;
fMap = fieldMap.createfMapFromStruct(hedTags);
end
for k=1:length(fields)
bidsField = fields{k};
if ~isfield(eventBIDS.(bidsField), 'EEGField')
eegField = [];
else
eegField = eventBIDS.(bidsField).EEGField;
end
if ~isempty(eegField)
if ~strcmp(bidsField, 'onset') && ~strcmp(bidsField, 'sample') % calculated by default using latency
eInfo = [eInfo; {bidsField eegField}];
end
if ~isempty(eventBIDS.(bidsField).LongName)
eInfoDesc.(bidsField).LongName = eventBIDS.(bidsField).LongName;
end
if ~isempty(eventBIDS.(bidsField).Description)
eInfoDesc.(bidsField).Description = eventBIDS.(bidsField).Description;
end
if ~isempty(eventBIDS.(bidsField).Units)
eInfoDesc.(bidsField).Units = eventBIDS.(bidsField).Units;
end
if isfield(eventBIDS.(bidsField),'Levels') && ~isempty(eventBIDS.(bidsField).Levels) && ~strcmp(eventBIDS.(bidsField).Levels,'n/a')
eInfoDesc.(bidsField).Levels = eventBIDS.(bidsField).Levels;
end
% parse HED if exists
if ~isempty(fMap)
tMap = fMap.getMap(eegField);
if ~isempty(tMap) && tMap.hasAnnotation()
codes = tMap.getCodes();
if numel(codes) == 1 && strcmp(codes{1},'HED')
tList = tMap.getValue('HED');
if tList.hasAnnotation()
eInfoDesc.(bidsField).HED = tagList.stringify(tList.getTags());
end
else
for c=1:numel(codes)
tList = tMap.getValue(codes{c});
% only add HED tags for the ones that
if tList.hasAnnotation()
eInfoDesc.(bidsField).HED.(codes{c}) = tagList.stringify(tList.getTags());
end
end
end
end
end
if isfield(eventBIDS.(bidsField), 'TermURL') && ~isempty(eventBIDS.(bidsField).TermURL)
eInfoDesc.(bidsField).TermURL = eventBIDS.(bidsField).TermURL;
end
end
end
% add info to STUDY if exists
if hasSTUDY
STUDY.BIDS.eInfoDesc = eInfoDesc;
STUDY.BIDS.eInfo = eInfo;
end
% add info to EEG structs
for e=1:numel(EEG)
EEG(e).BIDS.eInfoDesc = eInfoDesc;
EEG(e).BIDS.eInfo = eInfo;
EEG(e).saved = 'no';
EEG(e).history = [EEG(e).history command];
end
clear('eventBIDS');
end
% Callback for when a cell in event BIDS table is selected
function cellSelectedCB(~, obj, eventFields)
if size(obj.Indices,1) == 1
removeLevelUI();
row = obj.Indices(1);
col = obj.Indices(2);
field = obj.Source.Data{row, strcmp(obj.Source.ColumnName, 'BIDS Field')};
eegfield = obj.Source.Data{row, strcmp(obj.Source.ColumnName, 'EEGLAB Field')};
columnName = obj.Source.ColumnName{col};
if ~strcmp(columnName,'EEGLAB Field') && isempty(eegfield)
c6 = uicontrol(f, 'Style', 'text', 'String', sprintf('Please select matching EEGLAB field first'), 'Units', 'normalized', 'FontWeight', 'bold', 'FontAngle','italic','ForegroundColor', [0.9 0 0],'BackgroundColor', bg, 'Tag', 'noBidsMsg');
c6.Position = [0.01 0.44 0.5 0.05];
c6.HorizontalAlignment = 'Left';
else
if strcmp(columnName, 'EEGLAB Field')
if ~strcmp(field, 'onset') && ~strcmp(field, 'sample') % calculated automatically, can't be changed
c6 = uicontrol(f, 'Style', 'text', 'String', sprintf('Choose the matching EEGLAB field:'), 'Units', 'normalized', 'FontAngle','italic','ForegroundColor', fg,'BackgroundColor', bg, 'Tag', 'selectBIDSMsg');
c6.Position = [0.01 0.44 1 0.05];
c6.HorizontalAlignment = 'left';
c = uicontrol(f,'Style','popupmenu', 'Units', 'normalized', 'Tag', 'selectBIDSDD');
c.Position = [0.01 0.34 0.3 0.1];
curEEGFields = obj.Source.Data(:,col);
unset_eventFields = setdiff(eventFields, curEEGFields(~cellfun(@isempty, curEEGFields)));
c.String = ['None' unset_eventFields'];
% display existing selection
if ~isempty(eegfield)
c.String = [eegfield c.String'];
end
c.Callback = {@eegFieldSelected, obj.Source, row, col};
end
else % any other column selected
columnDefinition.LongName = 'Long, unabbreviated name of the field';
columnDefinition.Description = 'Description of the field';
columnDefinition.Levels = 'For categorical variables: possible values and their descriptions';
columnDefinition.Units = 'Measurement units - format [<prefix>]<name>';
columnDefinition.TermURL = 'URL pointing to a formal definition of this type of data in an ontology available on the web';
if strcmp(columnName, 'Levels')
createLevelUI('','',obj,field);
elseif strcmp(columnName, 'Description')
uicontrol(f, 'Style', 'text', 'String', sprintf('%s (%s):',columnName, columnDefinition.(columnName)), 'Units', 'normalized', 'Position',[0.01 0.44 0.98 0.05], 'HorizontalAlignment', 'left','FontAngle','italic','ForegroundColor', fg,'BackgroundColor', bg, 'Tag', 'cellContentHeader');
uicontrol(f, 'Style', 'edit', 'String', obj.Source.Data{row,col}, 'Units', 'normalized', 'Max',2,'Min',0,'Position',[0.01 0.24 0.7 0.2], 'HorizontalAlignment', 'left', 'Callback', {@descriptionCB, obj,field}, 'Tag', 'cellContentMsg');
elseif ~strcmp(columnName, 'BIDS Field')
if strcmp(columnName, 'Unit Name') || strcmp(columnName, 'Unit Prefix')
columnName = 'Units';
content = [obj.Source.Data{row,strcmp(obj.Source.ColumnName, 'Unit Prefix')} obj.Source.Data{row,strcmp(obj.Source.ColumnName, 'Unit Name')}];
else
content = obj.Source.Data{row,col};
end
% display cell content in lower panel
uicontrol(f, 'Style', 'text', 'String', sprintf('%s (%s):',columnName, columnDefinition.(columnName)), 'Units', 'normalized', 'Position',[0.01 0.44 0.98 0.05], 'HorizontalAlignment', 'left','FontAngle','italic','ForegroundColor', fg,'BackgroundColor', bg, 'Tag', 'cellContentHeader');
uicontrol(f, 'Style', 'text', 'String', sprintf('%s',content), 'Units', 'normalized', 'Position',[0.01 0.39 0.98 0.05], 'HorizontalAlignment', 'left','ForegroundColor', fg,'BackgroundColor', bg, 'Tag', 'cellContentMsg');
end
end
end
end
end
% Callback for when a field is selected from the EEGLAB fields dropdown
function eegFieldSelected(src, ~, table, row, col)
val = src.Value;
str = src.String;
selected = str{val};
if strcmp('None', selected)
selected = '';
end
table.Data{row,col} = selected;
field = table.Data{row, strcmp(table.ColumnName, 'BIDS Field')};
eventBIDS.(field).EEGField = selected;
end
% Callback for when a cell in Description column is selected
function descriptionCB(src,~,obj,field)
obj.Source.Data{obj.Indices(1),obj.Indices(2)} = src.String; % reset if found
eventBIDS.(field).Description = src.String;
end
% Callback for when a cell in event BIDS table is edited
function cellEditCB(~, obj)
field = obj.Source.Data{obj.Indices(1), strcmp(obj.Source.ColumnName, 'BIDS Field')};
column = obj.Source.ColumnName{obj.Indices(2)};
eegField = obj.Source.Data{obj.Indices(1),strcmp(obj.Source.ColumnName, 'EEGLAB Field')};
if ~strcmp(column, 'EEGLAB Field') && isempty(eegField)
obj.Source.Data{obj.Indices(1),obj.Indices(2)} = obj.PreviousData;
else
if ~strcmp(column, 'Levels')
if strcmp(column, 'EEGLAB Field')
if strcmp(field, 'onset') || strcmp(field, 'sample') % default EEGLAB calculation, can't be changed
obj.Source.Data{obj.Indices(1),obj.Indices(2)} = obj.PreviousData;
else
indicesOfOtherFields = setdiff(1:size(obj.Source.Data,1),obj.Indices(1));
otherFields = obj.Source.Data(indicesOfOtherFields,obj.Indices(2));
if ~isempty(obj.EditData) && any(strcmp(obj.EditData, otherFields)) % check for duplication of field name, ignoring empty name. BIDS <-> EEGLAB field mapping is one-to-one
obj.Source.Data{obj.Indices(1),obj.Indices(2)} = obj.PreviousData; % reset if found
else
eventBIDS.(field).EEGField = obj.EditData;
end
end
elseif strcmp(column, 'Unit Name') || strcmp(column, 'Unit Prefix')
unit = [obj.Source.Data{obj.Indices(1),strcmp(obj.Source.ColumnName, 'Unit Prefix')} obj.Source.Data{obj.Indices(1),strcmp(obj.Source.ColumnName, 'Unit Name')}];
eventBIDS.(field).Units = unit;
else
eventBIDS.(field).(column) = obj.EditData;
end
end
end
end
% Create levels editing panel
function createLevelUI(~,~,table,field)
removeLevelUI();
matchedRow = strcmp(table.Source.Data(:, strcmp(table.Source.ColumnName, 'BIDS Field')), field);
levelCellText = table.Source.Data{matchedRow, strcmp(table.Source.ColumnName, 'Levels')}; % text @ (field, Levels) cell. if 'n/a' then no action, 'Click to..' then conditional action, '<value>,...' then get levels
if strcmp(field, 'onset') || strcmp(field, 'sample') || strcmp(field, 'duration')
uicontrol(f, 'Style', 'text', 'String', 'Levels editing not applied for field with continuous values.', 'Units', 'normalized', 'Position', [0.01 0.45 1 0.05],'ForegroundColor', fg,'BackgroundColor', bg, 'Tag', 'levelEditMsg');
else
% retrieve all unique values from EEG.event.(field).
eegField = eventBIDS.(field).EEGField;
levels = getAllUniqueFieldValues(EEG, eegField)';
if strcmp(levelCellText,'Click to specify below') && length(levels) > levelThreshold
msg = sprintf('\tThere are more than %d unique levels for field %s.\nAre you sure you want to specify levels for it?', levelThreshold, eegField);
c4 = uicontrol(f, 'Style', 'text', 'String', msg, 'Units', 'normalized', 'FontWeight', 'bold', 'ForegroundColor', fg,'BackgroundColor', bg, 'Tag', 'confirmMsg');
c4.Position = [0 0.38 1 0.1];
c5 = uicontrol(f, 'Style', 'pushbutton', 'String', 'Yes', 'Units', 'normalized','Tag', 'confirmBtn', 'Callback', {@ignoreThresholdCB,table,field});
c5.Position = [0.5-c5.Extent(3)/2 0.33 0.1 0.05];
else
% build table data
t = cell(length(levels),2);
for lvl=1:length(levels)
formattedLevel = checkFormat(levels{lvl}); % put level in the right format for indexing. Number is prepended by 'x'
t{lvl,1} = formattedLevel;
if ~isempty(eventBIDS.(field).Levels) && isfield(eventBIDS.(field).Levels, formattedLevel)
t{lvl,2} = eventBIDS.(field).Levels.(formattedLevel);
end
end
% create UI
uicontrol(f, 'Style', 'text', 'String', ['Describing levels of ' field], 'Units', 'normalized', 'HorizontalAlignment', 'left', 'Position', [0.31 0.45 0.7 0.05],'FontWeight', 'bold','ForegroundColor', fg,'BackgroundColor', bg, 'Tag', 'levelEditMsg');
msg = 'BIDS allows you to describe the levels for each of your categorical fields. Describing levels helps other researchers understand your experiment better';
uicontrol(f, 'Style', 'text', 'String', msg, 'Units', 'normalized', 'HorizontalAlignment', 'Left','Position', [0.01 0 0.3 0.4],'ForegroundColor', fg,'BackgroundColor', bg, 'Tag', 'levelMsg');
h = uitable(f, 'Data', t(:,2), 'ColumnName', {'Description'}, 'RowName', t(:,1), 'Units', 'normalized', 'Position', [0.31 0.07 0.68 0.38], 'FontSize', fontSize, 'Tag', 'levelEditTbl', 'CellEditCallback',{@levelEditCB,field},'ColumnEditable',true);
h.ColumnWidth = {appWidth*0.68*0.8};
end
end
end
% Callback for when user chose to ignore threshold of maximum number of
% unique values when specifying categorical levels
function ignoreThresholdCB(~,~,table, bidsField)
matchedRow = strcmp(table.Source.Data(:, strcmp(table.Source.ColumnName, 'BIDS Field')), field);
table.Source.Data{matchedRow, strcmp(table.Source.ColumnName, 'Levels')} = 'Click to specify below (ignore max number of levels threshold)';
createLevelUI('','',table,bidsField);
end
% Callback for when a cell in the level specification table is edited
function levelEditCB(~, obj, field)
level = checkFormat(obj.Source.RowName{obj.Indices(1)});
description = obj.EditData;
% update eventBIDS structure
eventBIDS.(field).Levels.(level) = description;
specified_levels = fieldnames(eventBIDS.(field).Levels);
% Update main table
mainTable = findobj('Tag','eventBidsTable');
mainTable.Data{strcmp(mainTable.Data(:, strcmp(mainTable.ColumnName, 'BIDS Field')), field), strcmp('Levels',mainTable.ColumnName)} = strjoin(specified_levels, ',');
end
function formatted = checkFormat(str)
if ~isempty(str2num(str))
formatted = ['x' str];
else
formatted = strrep(str,' ','_'); %replace space with _
end
end
% Remove any existing old ui items of level specification panel
function removeLevelUI()
h = findobj('Tag', 'levelEditMsg');
if ~isempty(h)
delete(h);
end
h = findobj('Tag', 'levelEditTbl');
if ~isempty(h)
delete(h);
end
h = findobj('Tag', 'confirmMsg');
if ~isempty(h)
delete(h);
end
h = findobj('Tag', 'confirmBtn');
if ~isempty(h)
delete(h);
end
h = findobj('Tag', 'noLevelBtn');
if ~isempty(h)
delete(h);
end
h = findobj('Tag', 'noBidsMsg');
if ~isempty(h)
delete(h);
end
h = findobj('Tag', 'cellContentMsg');
if ~isempty(h)
delete(h);
end
h = findobj('Tag', 'cellContentHeader');
if ~isempty(h)
delete(h);
end
h = findobj('Tag', 'selectBIDSMsg');
if ~isempty(h)
delete(h);
end
h = findobj('Tag', 'selectBIDSDD');
if ~isempty(h)
delete(h);
end
h = findobj('Tag', 'levelMsg');
if ~isempty(h)
delete(h);
end
end
% get unique event value for all EEG.event.eegField
function uniqueValues = getAllUniqueFieldValues(EEG, eegField)
if isnumeric(EEG(1).event(1).(eegField))
uniqueValues = [];
elseif ischar(EEG(1).event(1).(eegField))
uniqueValues = {};
end
for e=1:numel(EEG)
if ischar(EEG(e).event(1).(eegField))
uniqueValues = [uniqueValues{:} {EEG(e).event.(eegField)}];
else
uniqueValues = [uniqueValues EEG(e).event.(eegField)];
end
uniqueValues = unique(uniqueValues);
end
if isnumeric(uniqueValues(1))
uniqueValues = arrayfun(@num2str,uniqueValues,'UniformOutput',false);
end
end
% generate main event data structure that holds information
% to be updated through GUI events
% event structure:
% event.(bidsField).EEGField
% .LongName
% .Description
% .Units
% .Levels
% .TermURL
function event = newEventBIDS(EEG, eventFields, bidsFields)
event = [];
bidsEEG = [];
if isfield(EEG,'BIDS') % return true if any of EEG structure has BIDS
bidsIdx = find(~cellfun(@isempty,{EEG.BIDS}));
if ~isempty(bidsIdx)
if numel(EEG) ~= numel(bidsIdx)
fprintf(['EEG.BIDS is found in ' num2str(numel(bidsIdx)) ' out of ' num2str(numel(EEG)) ' EEG structure(s). ']);
end
if bidsIdx(1) == 1
fprintf('Using BIDS info of first dataset...\n');
else % user-friendly message
fprintf(['Using BIDS info of EEG(' num2str(bidsIdx(1)) ')...\n']);
end
bidsEEG = EEG(bidsIdx(1));
end
end
% if resume editing
if ~isempty(bidsEEG) && isfield(bidsEEG.BIDS,'eInfoDesc') && ~isempty(bidsEEG.BIDS.eInfoDesc) && isfield(bidsEEG.BIDS,'eInfo')
prev_bids_fields = fieldnames(bidsEEG.BIDS.eInfoDesc);
for idx=1:numel(prev_bids_fields)
bids_field = prev_bids_fields{idx}; % to be keys of event struct
% add matching EEGLAB field
% eInfo: bidsField | eeglabField
hasMatchingEEGField = strcmp(bidsEEG.BIDS.eInfo(:,1),bids_field);
if any(hasMatchingEEGField)
eeg_field = bidsEEG.BIDS.eInfo{hasMatchingEEGField,2};
else
eeg_field = '';
end
if strcmp(bids_field, 'onset')
event.(bids_field).EEGField = 'From sample';
elseif strcmp(bids_field, 'sample')
event.(bids_field).EEGField = 'latency';
else
event.(bids_field).EEGField = eeg_field;
end
% copy BIDS info
if isfield(bidsEEG.BIDS.eInfoDesc,bids_field) && isfield(bidsEEG.BIDS.eInfoDesc.(bids_field), 'LongName')
event.(bids_field).LongName = bidsEEG.BIDS.eInfoDesc.(bids_field).LongName;
else
event.(bids_field).LongName = '';
end
if isfield(bidsEEG.BIDS.eInfoDesc,bids_field) && isfield(bidsEEG.BIDS.eInfoDesc.(bids_field), 'Description')
event.(bids_field).Description = bidsEEG.BIDS.eInfoDesc.(bids_field).Description;
else
event.(bids_field).Description = '';
end
if isfield(bidsEEG.BIDS.eInfoDesc,bids_field) && isfield(bidsEEG.BIDS.eInfoDesc.(bids_field), 'Units')
event.(bids_field).Units = bidsEEG.BIDS.eInfoDesc.(bids_field).Units;
else
event.(bids_field).Units = '';
end
if isfield(bidsEEG.BIDS.eInfoDesc,bids_field) && isfield(bidsEEG.BIDS.eInfoDesc.(bids_field), 'Levels')
event.(bids_field).Levels = bidsEEG.BIDS.eInfoDesc.(bids_field).Levels;
else
event.(bids_field).Levels = [];
end
if isfield(bidsEEG.BIDS.eInfoDesc,bids_field) && isfield(bidsEEG.BIDS.eInfoDesc.(bids_field), 'TermURL')
event.(bids_field).TermURL = bidsEEG.BIDS.eInfoDesc.(bids_field).TermURL;
else
event.(bids_field).TermURL = '';
end
end
fields = setdiff(bidsFields, fieldnames(bidsEEG.BIDS.eInfoDesc)); % add any unset default bids fields to the structure (in case prev session forgot to add these)
for idx=1:length(fields)
event.(fields{idx}).EEGField = '';
event.(fields{idx}).LongName = '';
event.(fields{idx}).Description = '';
event.(fields{idx}).Units = '';
event.(fields{idx}).Levels = [];
event.(fields{idx}).TermURL = '';
end
else % start fresh
fields = bidsFields;
for idx=1:length(fields)
if strcmp(fields{idx}, 'onset')
event.onset.EEGField = 'From sample';
event.onset.LongName = 'Event onset';
event.onset.Description = 'Onset (in seconds) of the event measured from the beginning of the acquisition of the first volume in the corresponding task imaging data file';
event.onset.Units = 'second';
event.onset.Levels = [];
event.onset.TermURL = '';
elseif strcmp(fields{idx}, 'sample')
event.sample.EEGField = 'latency';
event.sample.LongName = 'Sample';
event.sample.Description = 'Onset of the event according to the sampling scheme of the recorded modality';
event.sample.Units = '';
event.sample.Levels = [];
event.sample.TermURL = '';
elseif strcmp(fields{idx}, 'value')
event.value.EEGField = 'type';
event.value.LongName = 'Event marker';
event.value.Description = 'Marker value associated with the event';
event.value.Units = '';
event.value.Levels = [];
event.value.TermURL = '';
elseif strcmp(fields{idx}, 'duration')
event.duration.LongName = 'Event duration';
event.duration.Description = 'Duration of the event (measured from onset) in seconds. Must always be either zero or positive. A "duration" value of zero implies that the delta function or event is so short as to be effectively modeled as an impulse.';
event.duration.Units = 'second';
event.duration.Levels = [];
event.duration.TermURL = '';
else
event.(fields{idx}).EEGField = '';
event.(fields{idx}).LongName = '';
event.(fields{idx}).Description = '';
event.(fields{idx}).Units = '';
event.(fields{idx}).Levels = [];
event.(fields{idx}).TermURL = '';
end
end
end
end
end