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Add support for RNAseq data #73

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priyanka-surana opened this issue Jun 27, 2023 · 1 comment
Open

Add support for RNAseq data #73

priyanka-surana opened this issue Jun 27, 2023 · 1 comment
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@reichan1998
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feature Requests for new features

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@priyanka-surana
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Description of feature

Add subworkflow to align RNAseq data using STAR. Can be borrowed from nf-core/rnaseq.
@priyanka-surana priyanka-surana added enhancement Improvement of the existing features feature Requests for new features labels Jun 27, 2023
@muffato muffato removed the enhancement Improvement of the existing features label Jun 1, 2024
@muffato muffato moved this to To do in readmapping Jun 5, 2024
@reichan1998 reichan1998 self-assigned this Aug 6, 2024
@tkchafin
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Just adding a note that @reichan1998 had asked how we want to designate an input as rnaseq -- I suggested using the library column (last column in samplesheet) e.g., with "rnaseq" for now, but I will check this doesn't conflict with any established practice we might have. (Also will check how these end up being designated in the metadata for our internal system)

@tkchafin tkchafin mentioned this issue Aug 22, 2024
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@reichan1998 reichan1998

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Genome After Party
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readmapping
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@muffato @tkchafin @priyanka-surana @reichan1998