Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Genome mappability #23

Open
priyanka-surana opened this issue May 2, 2022 · 4 comments
Open

Genome mappability #23

priyanka-surana opened this issue May 2, 2022 · 4 comments
Labels
feature Requests for new features question Further information is requested

Comments

@priyanka-surana
Copy link
Contributor

priyanka-surana commented May 2, 2022 •
edited by muffato
Loading

Description of feature

It is equal to percentage of reads mapped to the genome.
Possible software: WGSIM
@priyanka-surana priyanka-surana added enhancement Improvement of the existing features question Further information is requested labels May 2, 2022
@priyanka-surana priyanka-surana added this to the 0.1 milestone May 2, 2022
@priyanka-surana
Copy link
Contributor Author

It is already calculated by GRIT. Where do we find this information?

@priyanka-surana priyanka-surana modified the milestones: 0.1, 0.2 May 2, 2022
@muffato
Copy link
Member

muffato commented May 4, 2022

GRIT typically record things in their Jira server. Double-check with Jo if they do it on the final assembly

@priyanka-surana
Copy link
Contributor Author

https://github.com/eeaunin/gda/blob/main/feature_extraction/run_wgsim.py

@priyanka-surana priyanka-surana pinned this issue Nov 7, 2022
@priyanka-surana priyanka-surana mentioned this issue Nov 25, 2022
Merged
10 tasks
@priyanka-surana priyanka-surana unpinned this issue Dec 1, 2022
@priyanka-surana priyanka-surana removed this from the 1.1.0 milestone May 18, 2023
@muffato muffato added feature Requests for new features and removed enhancement Improvement of the existing features labels Jun 1, 2024
@tkchafin
Copy link
Contributor

tkchafin commented Sep 9, 2024

Probably faster option? https://github.com/cpockrandt/genmap

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
feature Requests for new features question Further information is requested
Projects
Genome After Party
Status: Triage
genomenote
Status: To do
Milestone
No milestone
Development

No branches or pull requests
3 participants
@muffato @tkchafin @priyanka-surana