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We use Busco to assess the completeness & fragmentation of an assembly. The main parameter is a lineage name, that needs to be phylogenetically relevant to the species being tested. Our implementations are inconsistent:
BlobToolKit computes Busco against all lineages that are parent of the species, and Rich provides the closest one to Karen.
Description of feature
We use Busco to assess the completeness & fragmentation of an assembly. The main parameter is a lineage name, that needs to be phylogenetically relevant to the species being tested. Our implementations are inconsistent:
eutheria_odb10
rather than the more specific ones (rodents, primates, etc): https://github.com/sanger-tol/genomenote/blob/1.0.0/bin/get_odb.py#L35-L36We need to agree on one rule and use it throughout all pipelines.
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