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_pkgdown.yml
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/
_pkgdown.yml
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reference:
- title: "taxize"
contents:
- taxize
- taxize-defunct
- taxize_cite
- taxize-params
- taxize_options
- title: "Authentication"
contents:
- taxize-authentication
- getkey
- key_helpers
- title: "High level functions"
desc: >
Functions that work across sources
contents:
- children
- classification
- downstream
- upstream
- comm2sci
- sci2comm
- id2name
- lowest_common
- resolve
- synonyms
- tax_name
- tax_rank
- title: "Ping"
contents:
- ends_with("_ping")
- status_codes
- -ubio_ping
- title: "Get taxon identifiers"
contents:
- get_id_details
- taxon-state
- starts_with("get_")
- title: "Datasets"
contents:
- apg_families
- apg_orders
- plantGenusNames
- plantNames
- rank_ref
- rank_ref_zoo
- worrms_ranks
- species_plantarum_binomials
- theplantlist
- title: "Random names"
contents:
- names_list
- title: "Name Resolution Services"
contents:
- gni_details
- gni_search
- starts_with("gnr_")
- iplant_resolve
- tol_resolve
- title: "Name Parsers"
contents:
- gn_parse
- gni_parse
- gbif_parse
- title: "NCBI Taxonomy"
contents:
- starts_with("ncbi_")
- -matches("ping")
- genbank2uid
- title: "Catalogue of Life"
contents:
- starts_with("col_")
- -matches("ping")
- title: "Global Biodiversity Information Facility"
contents:
- starts_with("gbif_")
- scrapenames
- -matches("ping")
- title: "Encyclopedia of Life"
contents:
- starts_with("eol_")
- -matches("ping")
- title: "EUBON"
contents:
- starts_with("eubon_")
- title: "Index Fungorum"
contents:
- starts_with("fg_")
- -matches("ping")
- title: "Integrated Taxonomic Information Service"
contents:
- starts_with("itis_")
- -matches("ping")
- title: "UK National Biodiversity Network"
contents:
- starts_with("nbn_")
- -matches("ping")
- title: "Tropicos"
contents:
- starts_with("tp_")
- title: "The Plant List"
contents:
- starts_with("tpl_")
- title: "Kew's Plants of the World"
contents:
- starts_with("pow_")
- title: "IUCN"
contents:
- starts_with("iucn_")
- title: "Angiosperm Phylogeny Group"
contents:
- starts_with("apg")
- title: "Other data sources"
contents:
- bold_search
- bold_downstream
- ion
- ipni_search
- plantminer
- vascan_search
- worms_downstream
- title: "Utilities"
contents:
- class2tree
- rankagg
- tax_agg
- taxize_capwords
- title: "Defunct methods"
contents:
- taxize-defunct
- ubio_ping
- tnrs
- tnrs_sources