- v1.0.1
- Fix minor but that prevented HLA reference panel from building
- v1.0.0
- Bump major version number as first version post paper release
- Fix bugs related to rare haplotypes in full panel HMM
- v0.1.9
- Change default output of GT entry to phased value to facilitate ligating phase reslts together
- Add code to try and re-run samples with different parameter values when underflow happens
- v0.1.8
- RAM decrease when running many samples
- v0.1.7
- Speedups and RAM decrease when using reference panels with fewer haplotypes
- v0.1.6
- Discovered bug where only 1 read caused an error. Fix (obviate) this by requiring 2 of more reads through parameter minimum_number_of_sample_reads with default currently 2, where samples with fewer than 2 reads have all missing output
- v0.1.5
- Export downsampleToCov and set to 30 to reduce underflow likelihood for high coverage regions
- Add minGLValue as bound on haplotype genotype likelihoods also to reduce underflow likelihood
- v0.1.4
- Option to impute without specifying genetic map, just using expected genetic and physical distance
- v0.1.3
- Bugfixes
- v0.1.2
- More optimization, avoid normalization when possible, avoid unnecessary adds and mults
- v0.1.1
- Better acceptance tests
- More validation
- Use of genfile and/or phasefile
- v0.1.0
- First versionned beta release
- v0.0.0
- Generic development and pre-release version