From 4ba1c6d66a46911816a11d2f132a282cda9bf700 Mon Sep 17 00:00:00 2001 From: alfred-rxrx Date: Fri, 1 Dec 2023 11:56:10 +0000 Subject: [PATCH] chore: relock dependencies --- requirements/dev_3.10.txt | 44 ++++++++++++++++++++++++++++++------ requirements/dev_3.11.txt | 46 ++++++++++++++++++++++++++++++-------- requirements/dev_3.9.txt | 44 ++++++++++++++++++++++++++++++------ requirements/main_3.10.txt | 43 +++++++++++++++++++++++++++++++---- requirements/main_3.11.txt | 45 ++++++++++++++++++++++++++++++++----- requirements/main_3.9.txt | 43 +++++++++++++++++++++++++++++++---- 6 files changed, 228 insertions(+), 37 deletions(-) diff --git a/requirements/dev_3.10.txt b/requirements/dev_3.10.txt index 91f3539..51c1f73 100644 --- a/requirements/dev_3.10.txt +++ b/requirements/dev_3.10.txt @@ -28,10 +28,6 @@ anyio==3.7.1 # fastapi # jupyter-server # starlette -appnope==0.1.3 - # via - # ipykernel - # ipython argon2-cffi==23.1.0 # via jupyter-server argon2-cffi-bindings==21.2.0 @@ -91,9 +87,7 @@ cfgv==3.4.0 chardet==5.2.0 # via tox charset-normalizer==3.3.1 - # via - # aiohttp - # requests + # via requests chex==0.1.8 # via # optax @@ -165,6 +159,7 @@ filelock==3.12.4 # via # torch # tox + # triton # virtualenv flake8==6.1.0 # via efaar-benchmarking (pyproject.toml) @@ -467,6 +462,37 @@ numpy==1.26.1 # xarray numpyro==0.13.2 # via scvi-tools +nvidia-cublas-cu12==12.1.3.1 + # via + # nvidia-cudnn-cu12 + # nvidia-cusolver-cu12 + # torch +nvidia-cuda-cupti-cu12==12.1.105 + # via torch +nvidia-cuda-nvrtc-cu12==12.1.105 + # via torch +nvidia-cuda-runtime-cu12==12.1.105 + # via torch +nvidia-cudnn-cu12==8.9.2.26 + # via torch +nvidia-cufft-cu12==11.0.2.54 + # via torch +nvidia-curand-cu12==10.3.2.106 + # via torch +nvidia-cusolver-cu12==11.4.5.107 + # via torch +nvidia-cusparse-cu12==12.1.0.106 + # via + # nvidia-cusolver-cu12 + # torch +nvidia-nccl-cu12==2.18.1 + # via torch +nvidia-nvjitlink-cu12==12.3.101 + # via + # nvidia-cusolver-cu12 + # nvidia-cusparse-cu12 +nvidia-nvtx-cu12==12.1.105 + # via torch oauthlib==3.2.2 # via requests-oauthlib opt-einsum==3.3.0 @@ -767,6 +793,8 @@ stevedore==5.1.0 # via bandit sympy==1.12 # via torch +tbb==2021.11.0 + # via umap-learn tensorstore==0.1.46 # via # flax @@ -842,6 +870,8 @@ traitlets==5.11.2 # nbclient # nbconvert # nbformat +triton==2.1.0 + # via torch trove-classifiers==2023.10.18 # via validate-pyproject types-pkg-resources==0.1.3 diff --git a/requirements/dev_3.11.txt b/requirements/dev_3.11.txt index 83aa039..74d7bc7 100644 --- a/requirements/dev_3.11.txt +++ b/requirements/dev_3.11.txt @@ -28,10 +28,6 @@ anyio==3.7.1 # fastapi # jupyter-server # starlette -appnope==0.1.3 - # via - # ipykernel - # ipython argon2-cffi==23.1.0 # via jupyter-server argon2-cffi-bindings==21.2.0 @@ -46,8 +42,6 @@ asttokens==2.4.0 # via stack-data async-lru==2.0.4 # via jupyterlab -async-timeout==4.0.3 - # via aiohttp attrs==23.1.0 # via # aiohttp @@ -91,9 +85,7 @@ cfgv==3.4.0 chardet==5.2.0 # via tox charset-normalizer==3.3.1 - # via - # aiohttp - # requests + # via requests chex==0.1.8 # via # optax @@ -159,6 +151,7 @@ filelock==3.12.4 # via # torch # tox + # triton # virtualenv flake8==6.1.0 # via efaar-benchmarking (pyproject.toml) @@ -461,6 +454,37 @@ numpy==1.26.1 # xarray numpyro==0.13.2 # via scvi-tools +nvidia-cublas-cu12==12.1.3.1 + # via + # nvidia-cudnn-cu12 + # nvidia-cusolver-cu12 + # torch +nvidia-cuda-cupti-cu12==12.1.105 + # via torch +nvidia-cuda-nvrtc-cu12==12.1.105 + # via torch +nvidia-cuda-runtime-cu12==12.1.105 + # via torch +nvidia-cudnn-cu12==8.9.2.26 + # via torch +nvidia-cufft-cu12==11.0.2.54 + # via torch +nvidia-curand-cu12==10.3.2.106 + # via torch +nvidia-cusolver-cu12==11.4.5.107 + # via torch +nvidia-cusparse-cu12==12.1.0.106 + # via + # nvidia-cusolver-cu12 + # torch +nvidia-nccl-cu12==2.18.1 + # via torch +nvidia-nvjitlink-cu12==12.3.101 + # via + # nvidia-cusolver-cu12 + # nvidia-cusparse-cu12 +nvidia-nvtx-cu12==12.1.105 + # via torch oauthlib==3.2.2 # via requests-oauthlib opt-einsum==3.3.0 @@ -761,6 +785,8 @@ stevedore==5.1.0 # via bandit sympy==1.12 # via torch +tbb==2021.11.0 + # via umap-learn tensorstore==0.1.46 # via # flax @@ -825,6 +851,8 @@ traitlets==5.11.2 # nbclient # nbconvert # nbformat +triton==2.1.0 + # via torch trove-classifiers==2023.10.18 # via validate-pyproject types-pkg-resources==0.1.3 diff --git a/requirements/dev_3.9.txt b/requirements/dev_3.9.txt index 2ba4b2e..12c1e59 100644 --- a/requirements/dev_3.9.txt +++ b/requirements/dev_3.9.txt @@ -28,10 +28,6 @@ anyio==3.7.1 # fastapi # jupyter-server # starlette -appnope==0.1.3 - # via - # ipykernel - # ipython argon2-cffi==23.1.0 # via jupyter-server argon2-cffi-bindings==21.2.0 @@ -91,9 +87,7 @@ cfgv==3.4.0 chardet==5.2.0 # via tox charset-normalizer==3.3.1 - # via - # aiohttp - # requests + # via requests chex==0.1.8 # via # optax @@ -165,6 +159,7 @@ filelock==3.12.4 # via # torch # tox + # triton # virtualenv flake8==6.1.0 # via efaar-benchmarking (pyproject.toml) @@ -477,6 +472,37 @@ numpy==1.26.1 # xarray numpyro==0.13.2 # via scvi-tools +nvidia-cublas-cu12==12.1.3.1 + # via + # nvidia-cudnn-cu12 + # nvidia-cusolver-cu12 + # torch +nvidia-cuda-cupti-cu12==12.1.105 + # via torch +nvidia-cuda-nvrtc-cu12==12.1.105 + # via torch +nvidia-cuda-runtime-cu12==12.1.105 + # via torch +nvidia-cudnn-cu12==8.9.2.26 + # via torch +nvidia-cufft-cu12==11.0.2.54 + # via torch +nvidia-curand-cu12==10.3.2.106 + # via torch +nvidia-cusolver-cu12==11.4.5.107 + # via torch +nvidia-cusparse-cu12==12.1.0.106 + # via + # nvidia-cusolver-cu12 + # torch +nvidia-nccl-cu12==2.18.1 + # via torch +nvidia-nvjitlink-cu12==12.3.101 + # via + # nvidia-cusolver-cu12 + # nvidia-cusparse-cu12 +nvidia-nvtx-cu12==12.1.105 + # via torch oauthlib==3.2.2 # via requests-oauthlib opt-einsum==3.3.0 @@ -777,6 +803,8 @@ stevedore==5.1.0 # via bandit sympy==1.12 # via torch +tbb==2021.11.0 + # via umap-learn tensorstore==0.1.46 # via # flax @@ -852,6 +880,8 @@ traitlets==5.11.2 # nbclient # nbconvert # nbformat +triton==2.1.0 + # via torch trove-classifiers==2023.10.18 # via validate-pyproject types-pkg-resources==0.1.3 diff --git a/requirements/main_3.10.txt b/requirements/main_3.10.txt index 220672f..83a009d 100644 --- a/requirements/main_3.10.txt +++ b/requirements/main_3.10.txt @@ -53,9 +53,7 @@ cachetools==5.3.1 certifi==2023.7.22 # via requests charset-normalizer==3.3.1 - # via - # aiohttp - # requests + # via requests chex==0.1.8 # via # optax @@ -94,7 +92,9 @@ fastapi==0.104.0 # lightning # lightning-cloud filelock==3.12.4 - # via torch + # via + # torch + # triton flax==0.7.4 # via scvi-tools fonttools==4.43.1 @@ -293,6 +293,37 @@ numpy==1.26.1 # xarray numpyro==0.13.2 # via scvi-tools +nvidia-cublas-cu12==12.1.3.1 + # via + # nvidia-cudnn-cu12 + # nvidia-cusolver-cu12 + # torch +nvidia-cuda-cupti-cu12==12.1.105 + # via torch +nvidia-cuda-nvrtc-cu12==12.1.105 + # via torch +nvidia-cuda-runtime-cu12==12.1.105 + # via torch +nvidia-cudnn-cu12==8.9.2.26 + # via torch +nvidia-cufft-cu12==11.0.2.54 + # via torch +nvidia-curand-cu12==10.3.2.106 + # via torch +nvidia-cusolver-cu12==11.4.5.107 + # via torch +nvidia-cusparse-cu12==12.1.0.106 + # via + # nvidia-cusolver-cu12 + # torch +nvidia-nccl-cu12==2.18.1 + # via torch +nvidia-nvjitlink-cu12==12.3.101 + # via + # nvidia-cusolver-cu12 + # nvidia-cusparse-cu12 +nvidia-nvtx-cu12==12.1.105 + # via torch oauthlib==3.2.2 # via requests-oauthlib opt-einsum==3.3.0 @@ -481,6 +512,8 @@ stdlib-list==0.9.0 # via session-info sympy==1.12 # via torch +tbb==2021.11.0 + # via umap-learn tensorstore==0.1.46 # via # flax @@ -514,6 +547,8 @@ tqdm==4.66.1 # umap-learn traitlets==5.11.2 # via lightning +triton==2.1.0 + # via torch types-python-dateutil==2.8.19.14 # via arrow typing-extensions==4.8.0 diff --git a/requirements/main_3.11.txt b/requirements/main_3.11.txt index 030e44a..ee4c1b4 100644 --- a/requirements/main_3.11.txt +++ b/requirements/main_3.11.txt @@ -31,8 +31,6 @@ array-api-compat==1.4 # via anndata arrow==1.3.0 # via lightning -async-timeout==4.0.3 - # via aiohttp attrs==23.1.0 # via aiohttp backoff==2.2.1 @@ -53,9 +51,7 @@ cachetools==5.3.1 certifi==2023.7.22 # via requests charset-normalizer==3.3.1 - # via - # aiohttp - # requests + # via requests chex==0.1.8 # via # optax @@ -90,7 +86,9 @@ fastapi==0.104.0 # lightning # lightning-cloud filelock==3.12.4 - # via torch + # via + # torch + # triton flax==0.7.4 # via scvi-tools fonttools==4.43.1 @@ -289,6 +287,37 @@ numpy==1.26.1 # xarray numpyro==0.13.2 # via scvi-tools +nvidia-cublas-cu12==12.1.3.1 + # via + # nvidia-cudnn-cu12 + # nvidia-cusolver-cu12 + # torch +nvidia-cuda-cupti-cu12==12.1.105 + # via torch +nvidia-cuda-nvrtc-cu12==12.1.105 + # via torch +nvidia-cuda-runtime-cu12==12.1.105 + # via torch +nvidia-cudnn-cu12==8.9.2.26 + # via torch +nvidia-cufft-cu12==11.0.2.54 + # via torch +nvidia-curand-cu12==10.3.2.106 + # via torch +nvidia-cusolver-cu12==11.4.5.107 + # via torch +nvidia-cusparse-cu12==12.1.0.106 + # via + # nvidia-cusolver-cu12 + # torch +nvidia-nccl-cu12==2.18.1 + # via torch +nvidia-nvjitlink-cu12==12.3.101 + # via + # nvidia-cusolver-cu12 + # nvidia-cusparse-cu12 +nvidia-nvtx-cu12==12.1.105 + # via torch oauthlib==3.2.2 # via requests-oauthlib opt-einsum==3.3.0 @@ -477,6 +506,8 @@ stdlib-list==0.9.0 # via session-info sympy==1.12 # via torch +tbb==2021.11.0 + # via umap-learn tensorstore==0.1.46 # via # flax @@ -510,6 +541,8 @@ tqdm==4.66.1 # umap-learn traitlets==5.11.2 # via lightning +triton==2.1.0 + # via torch types-python-dateutil==2.8.19.14 # via arrow typing-extensions==4.8.0 diff --git a/requirements/main_3.9.txt b/requirements/main_3.9.txt index 29a6cf5..038dc76 100644 --- a/requirements/main_3.9.txt +++ b/requirements/main_3.9.txt @@ -53,9 +53,7 @@ cachetools==5.3.1 certifi==2023.7.22 # via requests charset-normalizer==3.3.1 - # via - # aiohttp - # requests + # via requests chex==0.1.8 # via # optax @@ -94,7 +92,9 @@ fastapi==0.104.0 # lightning # lightning-cloud filelock==3.12.4 - # via torch + # via + # torch + # triton flax==0.7.4 # via scvi-tools fonttools==4.43.1 @@ -297,6 +297,37 @@ numpy==1.26.1 # xarray numpyro==0.13.2 # via scvi-tools +nvidia-cublas-cu12==12.1.3.1 + # via + # nvidia-cudnn-cu12 + # nvidia-cusolver-cu12 + # torch +nvidia-cuda-cupti-cu12==12.1.105 + # via torch +nvidia-cuda-nvrtc-cu12==12.1.105 + # via torch +nvidia-cuda-runtime-cu12==12.1.105 + # via torch +nvidia-cudnn-cu12==8.9.2.26 + # via torch +nvidia-cufft-cu12==11.0.2.54 + # via torch +nvidia-curand-cu12==10.3.2.106 + # via torch +nvidia-cusolver-cu12==11.4.5.107 + # via torch +nvidia-cusparse-cu12==12.1.0.106 + # via + # nvidia-cusolver-cu12 + # torch +nvidia-nccl-cu12==2.18.1 + # via torch +nvidia-nvjitlink-cu12==12.3.101 + # via + # nvidia-cusolver-cu12 + # nvidia-cusparse-cu12 +nvidia-nvtx-cu12==12.1.105 + # via torch oauthlib==3.2.2 # via requests-oauthlib opt-einsum==3.3.0 @@ -485,6 +516,8 @@ stdlib-list==0.9.0 # via session-info sympy==1.12 # via torch +tbb==2021.11.0 + # via umap-learn tensorstore==0.1.46 # via # flax @@ -518,6 +551,8 @@ tqdm==4.66.1 # umap-learn traitlets==5.11.2 # via lightning +triton==2.1.0 + # via torch types-python-dateutil==2.8.19.14 # via arrow typing-extensions==4.8.0