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reactome_jar_pom.xml
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<?xml version="1.0" encoding="UTF-8"?>
<project xmlns="http://maven.apache.org/POM/4.0.0"
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
<modelVersion>4.0.0</modelVersion>
<groupId>org.reactome</groupId>
<artifactId>reactome</artifactId>
<version>1.0-SNAPSHOT</version>
<name>Reactome Jar</name>
<description>Reactome Java API</description>
<url>https://github.com/reactome/CuratorTool</url>
<organization>
<name>Reactome</name>
<url>https://reactome.org</url>
</organization>
<licenses>
<license>
<name>GNU AFFERO GENERAL PUBLIC LICENSE</name>
<url>https://www.gnu.org/licenses/agpl-3.0.txt</url>
</license>
</licenses>
<developers>
<developer>
<name>Reactome Team</name>
<email>[email protected]</email>
<organization>Reactome</organization>
<organizationUrl>https://reactome.org</organizationUrl>
</developer>
</developers>
<scm>
<connection>scm:git:git://github.com/reactome/CuratorTool.git</connection>
<developerConnection>scm:git:ssh://github.com/reactome/CuratorTool.git</developerConnection>
<url>https://github.com/reactome/CuratorTool</url>
<tag>master</tag>
</scm>
<build>
<sourceDirectory>${basedir}/src</sourceDirectory>
<outputDirectory>${basedir}/classes</outputDirectory>
<plugins>
<!-- Compiler plugin to compile the source code -->
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-compiler-plugin</artifactId>
<version>3.8.1</version>
<configuration>
<source>1.8</source>
<target>1.8</target>
</configuration>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-jar-plugin</artifactId>
<version>3.1.0</version>
<executions>
<!-- Suppress default JAR file creation -->
<execution>
<id>default-jar</id>
<phase>none</phase>
</execution>
<execution>
<id>classes</id>
<phase>package</phase>
<goals>
<goal>jar</goal>
</goals>
<configuration>
<includes>
<include>org/gk/model/*.class</include>
<include>org/gk/schema/*.class</include>
<include>org/gk/util/*.class</include>
<include>org/gk/persistence/*.class</include>
<include>org/gk/database/*.class</include>
<include>org/gk/database/util/*.class</include>
<include>org/gk/graphEditor/*.class</include>
<include>org/gk/property/*.class</include>
<include>org/gk/render/*.class</include>
<include>org/gk/slicing/*.class</include>
<include>org/gk/gkCurator/*.class</include>
<include>org/gk/gkEditor/*.class</include>
<include>org/gk/elv/*.class</include>
<include>org/gk/gkCurator/authorTool/*.class</include>
<include>org/gk/pathwaylayout/*.class</include>
</includes>
</configuration>
</execution>
</executions>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-javadoc-plugin</artifactId>
<version>3.0.0</version>
<executions>
<execution>
<id>attach-javadocs</id>
<goals>
<goal>jar</goal>
</goals>
</execution>
</executions>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-source-plugin</artifactId>
<version>3.0.1</version>
<executions>
<execution>
<id>attach-sources</id>
<goals>
<goal>jar</goal>
</goals>
</execution>
</executions>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-gpg-plugin</artifactId>
<version>1.6</version>
<executions>
<execution>
<id>sign-artifacts</id>
<phase>verify</phase>
<goals>
<goal>sign</goal>
</goals>
<configuration>
<keyname>${gpg.key}</keyname>
<passphraseServerId>${gpg.key}</passphraseServerId>
</configuration>
</execution>
</executions>
</plugin>
<plugin>
<groupId>org.sonatype.plugins</groupId>
<artifactId>nexus-staging-maven-plugin</artifactId>
<version>1.6.8</version>
<extensions>true</extensions>
<configuration>
<serverId>ossrh</serverId>
<nexusUrl>https://oss.sonatype.org/</nexusUrl>
<autoReleaseAfterClose>false</autoReleaseAfterClose>
</configuration>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-release-plugin</artifactId>
<version>2.5.3</version>
<configuration>
<autoVersionSubmodules>true</autoVersionSubmodules>
<useReleaseProfile>false</useReleaseProfile>
<releaseProfiles>release</releaseProfiles>
<goals>deploy</goals>
<tagNameFormat>v@{project.version}</tagNameFormat>
</configuration>
</plugin>
</plugins>
</build>
<dependencies>
<!-- Main dependencies -->
<dependency>
<groupId>commons-lang</groupId>
<artifactId>commons-lang</artifactId>
<version>2.6</version>
</dependency>
<dependency>
<groupId>org.apache.commons</groupId>
<artifactId>commons-csv</artifactId>
<version>1.13.0</version>
</dependency>
<dependency>
<groupId>commons-httpclient</groupId>
<artifactId>commons-httpclient</artifactId>
<version>3.1</version>
</dependency>
<dependency>
<groupId>log4j</groupId>
<artifactId>log4j</artifactId>
<version>1.2.17</version>
</dependency>
<dependency>
<groupId>com.fasterxml.jackson.core</groupId>
<artifactId>jackson-databind</artifactId>
<version>2.9.9</version>
</dependency>
<dependency>
<groupId>com.jayway.jsonpath</groupId>
<artifactId>json-path</artifactId>
<version>2.1.0</version>
</dependency>
<dependency>
<groupId>javax.jnlp</groupId>
<artifactId>jnlp</artifactId>
<version>1.2</version>
</dependency>
<dependency>
<groupId>javax.mail</groupId>
<artifactId>mail</artifactId>
<version>1.4.7</version>
</dependency>
<dependency>
<groupId>jgraph</groupId>
<artifactId>jgraph</artifactId>
<version>5.13.0.0</version>
</dependency>
<dependency>
<groupId>org.jdom</groupId>
<artifactId>jdom</artifactId>
<version>1.1.3</version>
</dependency>
<dependency>
<groupId>batik</groupId>
<artifactId>batik-svggen</artifactId>
<version>1.6-1</version>
</dependency>
<dependency>
<groupId>org.json</groupId>
<artifactId>json</artifactId>
<version>20140107</version>
</dependency>
<dependency>
<groupId>com.lowagie</groupId>
<artifactId>itext</artifactId>
<version>2.0.6</version>
</dependency>
<dependency>
<groupId>uk.ac.ebi.ols</groupId>
<artifactId>ols-client</artifactId>
<version>1.18</version>
</dependency>
<dependency>
<groupId>org.celldesigner</groupId>
<artifactId>celldesigner</artifactId>
<version>1.0.0</version>
</dependency>
<dependency>
<groupId>org.apache.tools</groupId>
<artifactId>ant</artifactId>
<version>1.0.0</version>
</dependency>
<!-- Test dependencies -->
<dependency>
<groupId>junit</groupId>
<artifactId>junit</artifactId>
<version>4.12</version>
</dependency>
</dependencies>
<distributionManagement>
<repository>
<id>ossrh</id>
<url>https://oss.sonatype.org/service/local/staging/deploy/maven2</url>
</repository>
<snapshotRepository>
<id>ossrh</id>
<url>https://oss.sonatype.org/content/repositories/snapshots</url>
</snapshotRepository>
</distributionManagement>
<repositories>
<repository>
<id>nexus-ebi-repo</id>
<name>The EBI internal repository</name>
<url>https://www.ebi.ac.uk/Tools/maven/repos/content/groups/ebi-repo/</url>
<releases>
<enabled>true</enabled>
</releases>
<snapshots>
<enabled>false</enabled>
</snapshots>
</repository>
<repository>
<id>ossrh</id>
<url>https://oss.sonatype.org/content/repositories/snapshots</url>
</repository>
<repository>
<id>freehep</id>
<url>https://java.freehep.org/maven2/</url>
</repository>
</repositories>
</project>