add a per-prep download button for sharing data

[antgonza]

For metaG preps:

• Prep file
• Sample info file from prep
• ko.biom
• ec.biom
• none.biom (per genome)
• per-gene.biom
• pathway.biom
• Cell counts.biom

For metaT:

• Prep file
• Sample info file from prep filtered
• ko filtered .biom
• ec filtered .biom
• none filtered .biom (per genome)
• per-gene filtered .biom
• pathway filtered .biom
• RNA copy counts filtered .biom

[AmandaBirmingham]

Apparently we also need a readme ...

[antgonza]

Just leaving this info here, this is the agreed on README.txt

Delivery created on 05.09.24

Host (human) removal: "human pan-genome reference, with the GRCh38 genome + PhiX and T2T-CHM13v2.0 genome" via "fastp_0.20.1 samtools_1.12  minimap2_2.18"

Main woltka reference: WoLr2, more info visit: https://ftp.microbio.me/pub/wol2/

Qiita's prep: https://qiita.ucsd.edu/study/description/15288?prep_id=16546


Sample information: sample_information_from_prep_16546.tsv
Prep information: 15288_prep_16546_20240321-092136.txt

194427_ec.biom	KEGG Enzyme (EC)
	Adapter and host filtering v2023.12	https://github.com/qiita-spots/qp-fastp-minimap2	2023.12	{"input": "194422", "reference": "None", "threads": 15}
	SynDNA Woltka	https://github.com/qiita-spots/qp-woltka	2023.11	{"Database": "/scratch/databases/synDNA_metagenomic/synDNA_metagenomic", "input": "194423", "min_sample_counts": 1}
	Woltka v0.1.4	https://github.com/qiita-spots/qp-woltka	2023.11	{"Database": "/scratch/qp-woltka/WoLr2/WoLr2", "input": "194425"}
194429_per-gene.biom	Per gene Predictions
	Adapter and host filtering v2023.12	https://github.com/qiita-spots/qp-fastp-minimap2	2023.12	{"input": "194422", "reference": "None", "threads": 15}
	SynDNA Woltka	https://github.com/qiita-spots/qp-woltka	2023.11	{"Database": "/scratch/databases/synDNA_metagenomic/synDNA_metagenomic", "input": "194423", "min_sample_counts": 1}
	Woltka v0.1.4	https://github.com/qiita-spots/qp-woltka	2023.11	{"Database": "/scratch/qp-woltka/WoLr2/WoLr2", "input": "194425"}
194428_none.biom	Per genome Predictions
	Adapter and host filtering v2023.12	https://github.com/qiita-spots/qp-fastp-minimap2	2023.12	{"input": "194422", "reference": "None", "threads": 15}
	SynDNA Woltka	https://github.com/qiita-spots/qp-woltka	2023.11	{"Database": "/scratch/databases/synDNA_metagenomic/synDNA_metagenomic", "input": "194423", "min_sample_counts": 1}
	Woltka v0.1.4	https://github.com/qiita-spots/qp-woltka	2023.11	{"Database": "/scratch/qp-woltka/WoLr2/WoLr2", "input": "194425"}
195908_cell_counts.biom	Cell counts
	Adapter and host filtering v2023.12	https://github.com/qiita-spots/qp-fastp-minimap2	2023.12	{"input": "194422", "reference": "None", "threads": 15}
	SynDNA Woltka	https://github.com/qiita-spots/qp-woltka	2023.11	{"Database": "/scratch/databases/synDNA_metagenomic/synDNA_metagenomic", "input": "194423", "min_sample_counts": 1}
	Woltka v0.1.4	https://github.com/qiita-spots/qp-woltka	2023.11	{"Database": "/scratch/qp-woltka/WoLr2/WoLr2", "input": "194425"}
	Calculate Cell Counts	https://github.com/qiita-spots/qp-woltka	2023.11	{"SynDNA hits": "194424", "Woltka per-genome": "194428", "min_coverage": "1", "min_rsquared": "0.8", "read_length": "150"}
194430_pathway.biom	KEGG Pathway
	Adapter and host filtering v2023.12	https://github.com/qiita-spots/qp-fastp-minimap2	2023.12	{"input": "194422", "reference": "None", "threads": 15}
	SynDNA Woltka	https://github.com/qiita-spots/qp-woltka	2023.11	{"Database": "/scratch/databases/synDNA_metagenomic/synDNA_metagenomic", "input": "194423", "min_sample_counts": 1}
	Woltka v0.1.4	https://github.com/qiita-spots/qp-woltka	2023.11	{"Database": "/scratch/qp-woltka/WoLr2/WoLr2", "input": "194425"}
194426_ko.biom	KEGG Ontology (KO)
	Adapter and host filtering v2023.12	https://github.com/qiita-spots/qp-fastp-minimap2	2023.12	{"input": "194422", "reference": "None", "threads": 15}
	SynDNA Woltka	https://github.com/qiita-spots/qp-woltka	2023.11	{"Database": "/scratch/databases/synDNA_metagenomic/synDNA_metagenomic", "input": "194423", "min_sample_counts": 1}
	Woltka v0.1.4	https://github.com/qiita-spots/qp-woltka	2023.11	{"Database": "/scratch/qp-woltka/WoLr2/WoLr2", "input": "194425"}

[antgonza]

... also add coverage per table.