You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
sudo apt install gcc # alternatively, you can install clang instead
I just set up a new virtual machine, Linux Mint, which is based on Ubuntu Jammy and followed the installation instructions.
I hit an issue with pip install . --no-binary redbiom which failed to compile with the error message:
gcc -pthread -B /home/qiita/miniforge3/envs/qiita/compiler_compat -Wno-unused-result -Wsign-compare -DNDEBUG -fwrapv -O2 -Wall -fPIC -O2 -isystem /home/qiita/miniforge3/envs/qiita/include -fPIC -O2 -isystem /home/qiita/miniforge3/envs/qiita/include -fPIC "-DPSYCOPG_VERSION=2.9.9 (dt dec pq3 ext lo64)" -DPSYCOPG_DEBUG=1 -DPG_VERSION_NUM=130014 -DHAVE_LO64=1 -DPSYCOPG_DEBUG=1 -I/home/qiita/miniforge3/envs/qiita/include/python3.9 -I. -I/usr/include/postgresql -I/usr/include/postgresql/13/server -I/usr/include/libxml2 -c psycopg/adapter_asis.c -o build/temp.linux-x86_64-cpython-39/psycopg/adapter_asis.o -Wdeclaration-after-statement
In file included from /usr/include/postgresql/limits.h:34,
from /home/qiita/miniforge3/envs/qiita/include/python3.9/Python.h:11,
from ./psycopg/psycopg.h:35,
from psycopg/adapter_asis.c:28:
/usr/lib/gcc/x86_64-linux-gnu/11/include/syslimits.h:7:15: fatal error: limits.h: No such file or directory
7 | #include_next <limits.h>
| ^~~~~~~~~~
compilation terminated.
It appears you are missing some prerequisite to build the package from source.
You may install a binary package by installing 'psycopg2-binary' from PyPI.
If you want to install psycopg2 from source, please install the packages
required for the build and try again.
For further information please check the 'doc/src/install.rst' file (also at
<https://www.psycopg.org/docs/install.html>).
error: command '/usr/bin/gcc' failed with exit code 1
It turned out, that the machine had gcc but no g++ installed. After adding thus, installation ran smoothly. I therefor recommend adding g++ in line 167 to the install instructions.
The text was updated successfully, but these errors were encountered:
qiita/INSTALL.md
Line 167 in 57d1b14
I just set up a new virtual machine, Linux Mint, which is based on Ubuntu Jammy and followed the installation instructions.
I hit an issue with
pip install . --no-binary redbiom
which failed to compile with the error message:It turned out, that the machine had
gcc
but nog++
installed. After adding thus, installation ran smoothly. I therefor recommend addingg++
in line 167 to the install instructions.The text was updated successfully, but these errors were encountered: