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treatment.owl
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<?xml version="1.0"?>
<rdf:RDF xmlns="http://plazi.org/treatment#"
xml:base="http://plazi.org/treatment"
xmlns:dwcFP="http://filteredpush.org/ontologies/FP/2.01/dwcFP#"
xmlns:owl="http://www.w3.org/2002/07/owl#"
xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
xmlns:dsw="http://purl.org/dsw/"
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
xmlns:occ="http://rs.tdwg.org/ontology/voc/OccurrenceRecord#"
xmlns:dwcIRI="http://rs.tdwg.org/dwc/iri/"
xmlns:dwc="http://rs.tdwg.org/dwc/terms/"
xmlns:core="http://rs.tdwg.org/ontology/Core#"
xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
xmlns:xml="http://www.w3.org/XML/1998/namespace"
xmlns:prov="http://www.w3.org/ns/prov#"
xmlns:dc="http://purl.org/dc/elements/1.1/">
<owl:Ontology rdf:about="http://plazi.org/treatment#">
<owl:versionIRI rdf:resource="http://plazi.org/treatment-0.0.1"/>
<!-- <owl:imports rdf:resource="http://purl.org/dsw/"/> -->
<rdfs:isDefinedBy>Perhaps a github branch name, or a github File</rdfs:isDefinedBy>
<rdfs:isDefinedBy></rdfs:isDefinedBy>
</owl:Ontology>
<!--
///////////////////////////////////////////////////////////////////////////////////////
//
// Object Properties
//
///////////////////////////////////////////////////////////////////////////////////////
-->
<!-- http://plazi.org/treatment#definedByTreatment -->
<owl:ObjectProperty rdf:about="http://plazi.org/treatment#definedByTreatment">
<owl:inverseOf rdf:resource="http://plazi.org/treatment#definesTaxon"/>
<rdfs:domain rdf:resource="http://purl.org/dsw/Taxon"/>
<rdfs:range rdf:resource="http://plazi.org/treatment#Treatment"/>
</owl:ObjectProperty>
<!-- http://plazi.org/treatment#definesTaxon -->
<owl:ObjectProperty rdf:about="http://plazi.org/treatment#definesTaxon">
<rdfs:domain rdf:resource="http://plazi.org/treatment#Treatment"/>
<rdfs:range rdf:resource="http://purl.org/dsw/Taxon"/>
<rdfs:comment>should be removed in favor of definesTaxonConcept</rdfs:comment>
</owl:ObjectProperty>
<!-- http://plazi.org/treatment#definesTaxonConcept -->
<owl:ObjectProperty rdf:about="http://plazi.org/treatment#definesTaxonConcept">
<rdfs:domain rdf:resource="http://plazi.org/treatment#Treatment"/>
<rdfs:range rdf:resource="http://purl.org/dsw/Taxon"/>
</owl:ObjectProperty>
<!-- http://plazi.org/treatment#hasBiology -->
<owl:ObjectProperty rdf:about="http://plazi.org/treatment#hasBiology">
<rdfs:subPropertyOf rdf:resource="http://plazi.org/treatment#hasInformation"/>
<rdfs:domain rdf:resource="http://plazi.org/treatment#Treatment"/>
<rdfs:range rdf:resource="http://plazi.org/treatment#Biology"/>
<rdfs:comment rdf:datatype="http://www.w3.org/2000/01/rdf-schema#Literal">BiologyEcologyFrom biological parts of div enumeration:BiologyEcology</rdfs:comment>
</owl:ObjectProperty>
<!-- http://plazi.org/treatment#hasCitation -->
<owl:ObjectProperty rdf:about="http://plazi.org/treatment#hasCitation">
<rdfs:subPropertyOf rdf:resource="http://www.w3.org/2002/07/owl#topObjectProperty"/>
<rdfs:domain rdf:resource="http://plazi.org/treatment#Treatment"/>
<rdfs:range rdf:resource="http://plazi.org/treatment#Citation"/>
<rdfs:comment rdf:datatype="http://www.w3.org/2000/01/rdf-schema#Literal">In practice a (part of?) a Nomenclature object is used as though it is a URI for a Treatment. For modelling, hasCitation refers to the Treatment itself, and serializations may need to extract the Nomenclature object.
?Normally, within a Treatment, a citation is attached to a Nomenclature object.</rdfs:comment>
</owl:ObjectProperty>
<!-- http://plazi.org/treatment#hasDescription -->
<owl:ObjectProperty rdf:about="http://plazi.org/treatment#hasDescription">
<rdfs:domain rdf:resource="http://plazi.org/treatment#Treatment"/>
<rdfs:range rdf:resource="http://plazi.org/treatment#Description"/>
<rdfs:comment>Should have Taxon as subject</rdfs:comment>
</owl:ObjectProperty>
<!-- http://plazi.org/treatment#hasDiagnosis -->
<owl:ObjectProperty rdf:about="http://plazi.org/treatment#hasDiagnosis">
<rdfs:subPropertyOf rdf:resource="http://plazi.org/treatment#hasInformation"/>
<rdfs:domain rdf:resource="http://plazi.org/treatment#Treatment"/>
<rdfs:range rdf:resource="http://plazi.org/treatment#Diagnosis"/>
<rdfs:comment>should perhaps be hasDiagnosis if</rdfs:comment>
</owl:ObjectProperty>
<!-- http://plazi.org/treatment#hasDistribution -->
<owl:ObjectProperty rdf:about="http://plazi.org/treatment#hasDistribution">
<rdfs:subPropertyOf rdf:resource="http://plazi.org/treatment#hasInformation"/>
<rdfs:domain rdf:resource="http://plazi.org/treatment#Treatment"/>
<rdfs:range rdf:resource="http://plazi.org/treatment#Distribution"/>
</owl:ObjectProperty>
<!-- http://plazi.org/treatment#hasEtymology -->
<owl:ObjectProperty rdf:about="http://plazi.org/treatment#hasEtymology">
<rdfs:subPropertyOf rdf:resource="http://plazi.org/treatment#hasInformation"/>
<rdfs:domain rdf:resource="http://plazi.org/treatment#Treatment"/>
<rdfs:range rdf:resource="http://plazi.org/treatment#Etymology"/>
</owl:ObjectProperty>
<!-- http://plazi.org/treatment#hasInformation -->
<owl:ObjectProperty rdf:about="http://plazi.org/treatment#hasInformation">
<rdfs:domain rdf:resource="http://plazi.org/treatment#Treatment"/>
</owl:ObjectProperty>
<!-- http://plazi.org/treatment#hasKey -->
<owl:ObjectProperty rdf:about="http://plazi.org/treatment#hasKey">
<rdfs:subPropertyOf rdf:resource="http://plazi.org/treatment#hasInformation"/>
<rdfs:range rdf:resource="http://plazi.org/treatment#Key"/>
</owl:ObjectProperty>
<!-- http://plazi.org/treatment#hasMaterialExamined -->
<owl:ObjectProperty rdf:about="http://plazi.org/treatment#hasMaterialExamined">
<rdfs:subPropertyOf rdf:resource="http://www.w3.org/2002/07/owl#topObjectProperty"/>
<rdfs:domain rdf:resource="http://plazi.org/treatment#Treatment"/>
<rdfs:range rdf:resource="http://plazi.org/treatment#Material"/>
<rdfs:comment>material_examined is intended to be applied to a Treatment object and take values in the class Material.</rdfs:comment>
</owl:ObjectProperty>
<!-- http://plazi.org/treatment#hasMaterialsMethods -->
<owl:ObjectProperty rdf:about="http://plazi.org/treatment#hasMaterialsMethods">
<rdfs:subPropertyOf rdf:resource="http://plazi.org/treatment#hasInformation"/>
<rdfs:domain rdf:resource="http://plazi.org/treatment#Treatment"/>
<rdfs:range rdf:resource="http://plazi.org/treatment#MaterialsMethods"/>
</owl:ObjectProperty>
<!-- http://plazi.org/treatment#hasPublicationCitation -->
<owl:ObjectProperty rdf:about="http://plazi.org/treatment#hasPublicationCitation">
<rdfs:subPropertyOf rdf:resource="http://plazi.org/treatment#hasCitation"/>
<rdfs:domain rdf:resource="http://plazi.org/treatment#Treatment"/>
<rdfs:range rdf:resource="http://plazi.org/treatment#Publication"/>
<rdfs:seeAlso rdf:resource="http://rs.tdwg.org/dwc/terms/namePublishedIn"/>
</owl:ObjectProperty>
<!-- http://plazi.org/treatment#hasScope -->
<owl:ObjectProperty rdf:about="http://plazi.org/treatment#hasScope">
<rdfs:range rdf:resource="http://plazi.org/treatment#ScopeState"/>
</owl:ObjectProperty>
<!-- http://plazi.org/treatment#hasSubDescription -->
<owl:ObjectProperty rdf:about="http://plazi.org/treatment#hasSubDescription">
<rdfs:range rdf:resource="http://plazi.org/treatment#Description"/>
</owl:ObjectProperty>
<!-- http://plazi.org/treatment#hasTreatmentCitation -->
<owl:ObjectProperty rdf:about="http://plazi.org/treatment#hasTreatmentCitation">
<rdfs:subPropertyOf rdf:resource="http://plazi.org/treatment#hasCitation"/>
<rdfs:range rdf:resource="http://plazi.org/treatment#Treatment"/>
<rdfs:comment rdf:datatype="http://www.w3.org/2000/01/rdf-schema#Literal">Perhaps better to just put an rdf:type on the object of citation? Ditto for other sub props of citation. Subprops should mainly be for inheritance of property constraints and KR.</rdfs:comment>
</owl:ObjectProperty>
<!-- http://plazi.org/treatment#name -->
<owl:ObjectProperty rdf:about="http://plazi.org/treatment#name">
<rdfs:domain rdf:resource="http://plazi.org/treatment#Treatment"/>
<rdfs:range rdf:resource="http://plazi.org/treatment#Nomenclature"/>
<rdfs:seeAlso rdf:resource="http://rs.tdwg.org/dwc/terms/scientificName"/>
<rdfs:seeAlso rdf:resource="http://rs.tdwg.org/dwc/terms/scientificNameAuthorship"/>
</owl:ObjectProperty>
<!-- http://plazi.org/treatment#publishedIn -->
<owl:ObjectProperty rdf:about="http://plazi.org/treatment#publishedIn"/>
<!-- http://plazi.org/treatment#relatedTreatment -->
<owl:ObjectProperty rdf:about="http://plazi.org/treatment#relatedTreatment">
<rdfs:domain rdf:resource="http://plazi.org/treatment#Treatment"/>
<rdfs:range rdf:resource="http://plazi.org/treatment#Treatment"/>
<rdfs:comment>E.g. a Treatment for a species might be deemed related to the Treatment for a particular Genus. hasRelatedTreatment might need subProperties, e.g. hasOriginalGenus. Or a treatment of a species might be publishedWith Gid, where Gid is the URI of the genus whose original publication contains the genus treatment and the species treatment.
Analagous to the recursive "treatment" element of "treatment" in taxonx.
</rdfs:comment>
</owl:ObjectProperty>
<!--
///////////////////////////////////////////////////////////////////////////////////////
//
// Data properties
//
///////////////////////////////////////////////////////////////////////////////////////
-->
<!-- http://plazi.org/treatment#descriptiveProperty -->
<owl:DatatypeProperty rdf:about="http://plazi.org/treatment#descriptiveProperty"/>
<!-- http://plazi.org/treatment#synopsis -->
<owl:DatatypeProperty rdf:about="http://plazi.org/treatment#synopsis">
<rdfs:range rdf:resource="http://www.w3.org/2000/01/rdf-schema#Literal"/>
</owl:DatatypeProperty>
<owl:DatatypeProperty rdf:about="http://plazi.org/treatment#gbifOccurrenceId">
<rdfs:range rdf:resource="http://www.w3.org/2000/01/rdf-schema#Literal"/>
</owl:DatatypeProperty>
<owl:DatatypeProperty rdf:about="http://plazi.org/treatment#gbifSpecimenId">
<rdfs:range rdf:resource="http://www.w3.org/2000/01/rdf-schema#Literal"/>
</owl:DatatypeProperty>
<owl:DatatypeProperty rdf:about="http://plazi.org/treatment#httpUri">
<rdfs:range rdf:resource="http://www.w3.org/2001/XMLSchema#anyUri"/>
</owl:DatatypeProperty>
<!--
///////////////////////////////////////////////////////////////////////////////////////
//
// Classes
//
///////////////////////////////////////////////////////////////////////////////////////
-->
<!-- http://plazi.org/treatment#Author -->
<owl:Class rdf:about="http://plazi.org/treatment#Author">
<rdfs:subClassOf rdf:resource="http://www.w3.org/2002/07/owl#Thing"/>
</owl:Class>
<!-- http://plazi.org/treatment#Biology -->
<owl:Class rdf:about="http://plazi.org/treatment#Biology"/>
<!-- http://plazi.org/treatment#Citation -->
<owl:Class rdf:about="http://plazi.org/treatment#Citation"/>
<!-- http://plazi.org/treatment#Description -->
<owl:Class rdf:about="http://plazi.org/treatment#Description"/>
<!-- http://plazi.org/treatment#Diagnosis -->
<owl:Class rdf:about="http://plazi.org/treatment#Diagnosis"/>
<!-- http://plazi.org/treatment#Distribution -->
<owl:Class rdf:about="http://plazi.org/treatment#Distribution"/>
<!-- http://plazi.org/treatment#Etymology -->
<owl:Class rdf:about="http://plazi.org/treatment#Etymology"/>
<!-- http://plazi.org/treatment#Key -->
<owl:Class rdf:about="http://plazi.org/treatment#Key"/>
<!-- http://plazi.org/treatment#LifeStage -->
<owl:Class rdf:about="http://plazi.org/treatment#LifeStage">
<rdfs:subClassOf rdf:resource="http://plazi.org/treatment#ScopeState"/>
</owl:Class>
<!-- http://plazi.org/treatment#Material -->
<owl:Class rdf:about="http://plazi.org/treatment#Material"/>
<!-- http://plazi.org/treatment#MaterialsMethods -->
<owl:Class rdf:about="http://plazi.org/treatment#MaterialsMethods"/>
<!-- http://plazi.org/treatment#Nomenclature -->
<owl:Class rdf:about="http://plazi.org/treatment#Nomenclature"/>
<!-- http://plazi.org/treatment#Publication -->
<owl:Class rdf:about="http://plazi.org/treatment#Publication"/>
<!-- http://plazi.org/treatment#ScopeState -->
<owl:Class rdf:about="http://plazi.org/treatment#ScopeState">
<rdfs:comment>Should the subclasses be named something like Scope_Sex rather than just Sex, which might have other uses? Or is it good to let the general thing live here?</rdfs:comment>
<rdfs:comment>Should there be disjointness axioms on the indivituals that are scopes?</rdfs:comment>
<rdfs:comment>These should have a some well kown instances. As of 9/11/2015, these are individuals that model types given by LifeState, Season, and Sex, all children of class ScopeState</rdfs:comment>
</owl:Class>
<!-- http://plazi.org/treatment#Season -->
<owl:Class rdf:about="http://plazi.org/treatment#Season">
<rdfs:subClassOf rdf:resource="http://plazi.org/treatment#ScopeState"/>
</owl:Class>
<!-- http://plazi.org/treatment#Sex -->
<owl:Class rdf:about="http://plazi.org/treatment#Sex">
<rdfs:subClassOf rdf:resource="http://plazi.org/treatment#ScopeState"/>
</owl:Class>
<!-- http://plazi.org/treatment#SubDescription -->
<owl:Class rdf:about="http://plazi.org/treatment#SubDescription">
<rdfs:subClassOf rdf:resource="http://plazi.org/treatment#Description"/>
</owl:Class>
<!-- http://plazi.org/treatment#Treatment -->
<owl:Class rdf:about="http://plazi.org/treatment#Treatment"/>
<!-- http://purl.org/dsw/Taxon -->
<owl:Class rdf:about="http://purl.org/dsw/Taxon"/>
<!-- http://rs.tdwg.org/ontology/voc/OccurrenceRecord#OccurrenceRecord -->
<owl:Class rdf:about="http://rs.tdwg.org/ontology/voc/OccurrenceRecord#OccurrenceRecord"/>
<!--
///////////////////////////////////////////////////////////////////////////////////////
//
// Individuals
//
///////////////////////////////////////////////////////////////////////////////////////
-->
<!-- http://plazi.org/treatment#adult -->
<owl:NamedIndividual rdf:about="http://plazi.org/treatment#adult">
<rdf:type rdf:resource="http://plazi.org/treatment#LifeStage"/>
</owl:NamedIndividual>
<!-- http://plazi.org/treatment#anyLifeStage -->
<owl:NamedIndividual rdf:about="http://plazi.org/treatment#anyLifeStage">
<rdf:type rdf:resource="http://plazi.org/treatment#LifeStage"/>
</owl:NamedIndividual>
<!-- http://plazi.org/treatment#anySeason -->
<owl:NamedIndividual rdf:about="http://plazi.org/treatment#anySeason">
<rdf:type rdf:resource="http://plazi.org/treatment#Season"/>
</owl:NamedIndividual>
<!-- http://plazi.org/treatment#anySex -->
<owl:NamedIndividual rdf:about="http://plazi.org/treatment#anySex">
<rdf:type rdf:resource="http://plazi.org/treatment#Sex"/>
</owl:NamedIndividual>
<!-- http://plazi.org/treatment#autumn -->
<owl:NamedIndividual rdf:about="http://plazi.org/treatment#autumn">
<rdf:type rdf:resource="http://plazi.org/treatment#Season"/>
</owl:NamedIndividual>
<!-- http://plazi.org/treatment#female -->
<owl:NamedIndividual rdf:about="http://plazi.org/treatment#female">
<rdf:type rdf:resource="http://plazi.org/treatment#Sex"/>
</owl:NamedIndividual>
<!-- http://plazi.org/treatment#juvenile -->
<owl:NamedIndividual rdf:about="http://plazi.org/treatment#juvenile">
<rdf:type rdf:resource="http://plazi.org/treatment#LifeStage"/>
</owl:NamedIndividual>
<!-- http://plazi.org/treatment#male -->
<owl:NamedIndividual rdf:about="http://plazi.org/treatment#male">
<rdf:type rdf:resource="http://plazi.org/treatment#Sex"/>
</owl:NamedIndividual>
<!-- http://plazi.org/treatment#spring -->
<owl:NamedIndividual rdf:about="http://plazi.org/treatment#spring">
<rdf:type rdf:resource="http://plazi.org/treatment#Season"/>
</owl:NamedIndividual>
<!-- http://plazi.org/treatment#summer -->
<owl:NamedIndividual rdf:about="http://plazi.org/treatment#summer">
<rdf:type rdf:resource="http://plazi.org/treatment#Season"/>
</owl:NamedIndividual>
<!-- http://plazi.org/treatment#winter -->
<owl:NamedIndividual rdf:about="http://plazi.org/treatment#winter">
<rdf:type rdf:resource="http://plazi.org/treatment#Season"/>
</owl:NamedIndividual>
</rdf:RDF>
<!-- Generated by the OWL API (version 4.2.5.20160517-0735) https://github.com/owlcs/owlapi -->