ITK installation issues

[jluethi]

When deploying this task on the Pelkmans lab Fractal server, we run into issues with the automatic task installation. Import of ITK libraries fails in the following way:

TASK ERROR: Task name: Compute Registration (elastix), position in Workflow: 1
TRACEBACK:
Traceback (most recent call last):
  File "/path/to/fractal-server-env/lib/python3.10/site-packages/fractal_server/app/runner/v2/runner_functions_low_level.py", line 111, in run_single_task
    raise e
  File "/path/to/fractal-server-env/lib/python3.10/site-packages/fractal_server/app/runner/v2/runner_functions_low_level.py", line 103, in run_single_task
    _call_command_wrapper(
  File "/path/to/fractal-server-env/lib/python3.10/site-packages/fractal_server/app/runner/v2/runner_functions_low_level.py", line 55, in _call_command_wrapper
    raise TaskExecutionError(err)
fractal_server.app.runner.exceptions.TaskExecutionError: Traceback (most recent call last):
  File "/net/nfs4/pelkmanslab-fileserver-fractal/path/to/FRACTAL_TASKS_DIR/17/abbott/0.0.1/venv/lib/python3.10/site-packages/abbott/fractal_tasks/compute_registration_elastix.py", line 24, in <module>
    from abbott.registration.itk_elastix import register_transform_only
  File "/path/to/FRACTAL_TASKS_DIR/17/abbott/0.0.1/venv/lib/python3.10/site-packages/abbott/registration/itk_elastix.py", line 9, in <module>
    def cast(img: itk.Image, out_type: type):
  File "/path/to/FRACTAL_TASKS_DIR/17/abbott/0.0.1/venv/lib/python3.10/site-packages/itk/support/lazy.py", line 138, in __getattribute__
    base.itk_load_swig_module(module, namespace)
  File "/path/to/FRACTAL_TASKS_DIR/17/abbott/0.0.1/venv/lib/python3.10/site-packages/itk/support/base.py", line 94, in itk_load_swig_module
    itk_load_swig_module(dep, namespace)
  File "/path/to/FRACTAL_TASKS_DIR/17/abbott/0.0.1/venv/lib/python3.10/site-packages/itk/support/base.py", line 130, in itk_load_swig_module
    l_module = loader.load(swig_module_name)
  File "/path/to/FRACTAL_TASKS_DIR/17/abbott/0.0.1/venv/lib/python3.10/site-packages/itk/support/base.py", line 289, in load
    l_spec.loader.exec_module(l_module)  # pytype: disable=attribute-error
  File "/path/to/FRACTAL_TASKS_DIR/17/abbott/0.0.1/venv/lib/python3.10/site-packages/itk/support/../ITKPyBasePython.py", line 63, in <module>
    from itk.pyBasePython import *
  File "/path/to/FRACTAL_TASKS_DIR/17/abbott/0.0.1/venv/lib/python3.10/site-packages/itk/pyBasePython.py", line 15, in <module>
    from . import _ITKCommonPython
ImportError: libtbb.so.12: cannot open shared object file: No such file or directory

I'll document what I find out about it here

[jluethi]

It appears to be caused by this issue here: InsightSoftwareConsortium/ITK#4713

[jluethi]

I will try downgrading to itk 5.3.0, which reportedly doesn't have this issue.
This also requires numpy < 2 and a compatible version of itk-elastix (itk-elastix==0.17.1 is compatible with itk 5.3.0)

I have manually installed this in the current server env to debug and if that works, we can pin those versions for the package & test whether they install correctly.